Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0409100-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:12747743:12760653:1 gene:Os07g0409100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CLB1. (Os07t0409100-01)
Sequence

ATGGGGCTGATCTCGGGGATGGTGATGGGGATGGTGGTCGGCGTCGCGCTTATGGCCGGG
TGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCGCTAAGGCTGCGGATATCAAG
GTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGCTGTGCGGCGACAATTTCCCCGAG
TGGATATCCTTCCCGCAGTATGAGCAGGTGAAATGGCTGAACAAGCATCTCAGCAAACTC
TGGCCTTTCGTTGATCAAGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTA
GATGATTATCGACCTCCAGGAATAAAATCTCTGAAGTTCAGCAAATTCTCTCTTGGAACT
GTTTCACCAAAGATAGAAGGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATG
GATATAGATCTTCGTTGGGGTGGTGATCCAAGCATAATCCTTGCTGTTGATGCTGTTGTT
GCATCACTTCCTATTCAGCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTT
CAACTATCAGAGGAGATCCCTTGCATCTCTGCTGTTGTTGTTGCTCTTCTTGCAGAGCCA
GAGCCGAAAATACAATACACTTTGAAGGCTATTGGAGGAAGTCTGACCGCTGTTCCAGGA
CTCTCCGACATGATTGATGACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCA
CACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGTGAGCTGGAGCTTAAACCT
CAGGGAAGACTTACTGTTACTGTAGTAAAAGCAACTTCATTGAAGAATAAGGAGTTGATT
GGTAAATCAGATCCATATGTGATACTATATGTGCGTCCAATGTTCAAGGTCAAAACAAAA
GTCATAGATGATAACCTAAATCCTGAATGGAATGAAACATTCCCTCTGATTGTTGAAGAC
AAAGAAACCCAGTCTGTCATTTTTGAGGTATATGATGAAGACAGACTTCAGCAAGACAAA
AAGCTTGGTGTAGCTAAACTAGCAGTGAACAGTCTTCAACCTGAGGCTACCAGTGAAATC
ACTTTGAAACTTCAGCAATCACTAGATTCTCTTAAAATTAAGGACACCAAGGATAGAGGA
ACATTACATCTTCAGGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTA
GAGTCTGAAAAGAGAGCTATCGAGGAGAGAAAGCGACTCAAGGAGGCTGGGGTTATTGGT
AGTACAATGGATGCTCTTGGTGGTGCTGCTTCACTAGTTGGTTCTGGTGTTGGACTTGTG
GGCACTGGCATTGTCGGCGGGGTTGGACTTGTTGGATCAGGAATTGGTGCTGGTGTTGGG
CTTGTTGGTTCGGGTGTTGGGCTTGTTGGTTCGGGTATTGGCGCTGTCGGCAGCGGCCTC
GGTAAAGCTGGGAAATTCATGGGCAAGACTGTGGCCGGGCCTTTCAGTATGTCCCGGAAG
AACGGTAGCAGCTCAACTGCTCCCCAGGCTGAACAACCTTCTGCGTGA

Peptide Sequence

PEP ID

Os07t0409100-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:12747743:12760653:1 gene:Os07g0409100 transcript:Os07t0409100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CLB1. (Os07t0409100-01)
Sequence

MGLISGMVMGMVVGVALMAGWSRVMQRRSRKRIAKAADIKVLGSLGRDDLKKLCGDNFPE
WISFPQYEQVKWLNKHLSKLWPFVDQAATAVVKESVEPLLDDYRPPGIKSLKFSKFSLGT
VSPKIEGIRIQNIQPGQIIMDIDLRWGGDPSIILAVDAVVASLPIQLKDLQVYTIVRVVF
QLSEEIPCISAVVVALLAEPEPKIQYTLKAIGGSLTAVPGLSDMIDDTVNSIVSDMLKWP
HRLVVPLGVNVDTSELELKPQGRLTVTVVKATSLKNKELIGKSDPYVILYVRPMFKVKTK
VIDDNLNPEWNETFPLIVEDKETQSVIFEVYDEDRLQQDKKLGVAKLAVNSLQPEATSEI
TLKLQQSLDSLKIKDTKDRGTLHLQVTYHPFSKEEQMEALESEKRAIEERKRLKEAGVIG
STMDALGGAASLVGSGVGLVGTGIVGGVGLVGSGIGAGVGLVGSGVGLVGSGIGAVGSGL
GKAGKFMGKTVAGPFSMSRKNGSSSTAPQAEQPSA

Transcript Sequence

Transcript ID

Os07t0409100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:12747743:12760653:1 gene:Os07g0409100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CLB1. (Os07t0409100-01)
Sequence

AACCCTCCCCCTCGTCTCCTCCGCTGCGAAGCCGCAGATCTCGAGCTGCCATTCGATTGA
TGAGGTAAGGGGGGTGCCGGCGCGAGAAGCGAGGTTGGCTGGCCGGCGGAGGGCGGGCTG
TCGGTCGCGGGTGCGCCAGGATGGGGCTGATCTCGGGGATGGTGATGGGGATGGTGGTCG
GCGTCGCGCTTATGGCCGGGTGGAGCCGTGTGATGCAGCGGCGCAGCAGGAAGCGCATCG
CTAAGGCTGCGGATATCAAGGTCCTTGGGTCTCTCGGTAGGGACGATCTCAAGAAGCTGT
GCGGCGACAATTTCCCCGAGTGGATATCCTTCCCGCAGTATGAGCAGGTGAAATGGCTGA
ACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAGCTGCCACTGCAGTAGTCAAGG
AATCTGTTGAGCCACTGCTAGATGATTATCGACCTCCAGGAATAAAATCTCTGAAGTTCA
GCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAGGTATTCGCATTCAAAATATTC
AGCCAGGCCAAATCATAATGGATATAGATCTTCGTTGGGGTGGTGATCCAAGCATAATCC
TTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAGCTCAAAGATCTTCAAGTCTACA
CCATTGTCCGTGTTGTATTTCAACTATCAGAGGAGATCCCTTGCATCTCTGCTGTTGTTG
TTGCTCTTCTTGCAGAGCCAGAGCCGAAAATACAATACACTTTGAAGGCTATTGGAGGAA
GTCTGACCGCTGTTCCAGGACTCTCCGACATGATTGATGACACTGTCAATTCAATTGTTT
CTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAA
GTGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGCAACTTCAT
TGAAGAATAAGGAGTTGATTGGTAAATCAGATCCATATGTGATACTATATGTGCGTCCAA
TGTTCAAGGTCAAAACAAAAGTCATAGATGATAACCTAAATCCTGAATGGAATGAAACAT
TCCCTCTGATTGTTGAAGACAAAGAAACCCAGTCTGTCATTTTTGAGGTATATGATGAAG
ACAGACTTCAGCAAGACAAAAAGCTTGGTGTAGCTAAACTAGCAGTGAACAGTCTTCAAC
CTGAGGCTACCAGTGAAATCACTTTGAAACTTCAGCAATCACTAGATTCTCTTAAAATTA
AGGACACCAAGGATAGAGGAACATTACATCTTCAGGTCACATATCACCCATTTTCAAAGG
AAGAACAGATGGAAGCCCTAGAGTCTGAAAAGAGAGCTATCGAGGAGAGAAAGCGACTCA
AGGAGGCTGGGGTTATTGGTAGTACAATGGATGCTCTTGGTGGTGCTGCTTCACTAGTTG
GTTCTGGTGTTGGACTTGTGGGCACTGGCATTGTCGGCGGGGTTGGACTTGTTGGATCAG
GAATTGGTGCTGGTGTTGGGCTTGTTGGTTCGGGTGTTGGGCTTGTTGGTTCGGGTATTG
GCGCTGTCGGCAGCGGCCTCGGTAAAGCTGGGAAATTCATGGGCAAGACTGTGGCCGGGC
CTTTCAGTATGTCCCGGAAGAACGGTAGCAGCTCAACTGCTCCCCAGGCTGAACAACCTT
CTGCGTGACTTGATGTACAGTGATTGCAATGGACATCGCATGTTCAGTTGCGTGTTAATT
CTGTTTGATATAAACTTGTGATACCTAGAATTATAGGGTTGCATACCATGCATTTCAGTG
TTCTGGCACCGTCGGTGTCAATTATATGACCATCTGTTGCTTTTTTTTCTTCGTTCTGTT
TTTACCTGAAGATAAATAGCAAGATTAAACTGTAAATTGGCAAGCTAGACATATCCAGAT
CCTTTCTGGACAATGCAATGGTATTGAAATTTGTCGTTATTA