Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0300200-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:11845814:11849019:1 gene:Os07g0300200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN likes 5 description:Pentatricopeptide repeat domain containing protein. (Os07t0300200-01)
Sequence	ATGCTCCTCGCCGCGCGCGGCCGCCGTCACCCCTTCGCCGCCGCGCGCCTCCTTCCGATC CCGCTTTCCTCCGGCCCCTCCTTCGCCTCCTCCACCACCACCACGACCTCCAATGGCGCC TGTTCGTCCTCCGCCGCGGACCCCGACGCCGTGGCCGCCGAGGTGGCCACCCTCCTCTCC CGCTGCTCCGGCGACTGGAGGCTCGCCGTCTCCTCCTCCGACCTCCCCTCCCGCCTCTCC CCCGCCGCCATCTCCTCCCTCGTCCGACGACGCCCGTCCCCCTCCTCCCCGCGCCTCCAC CCTAAGCTCCTCCTCGACTTCTTCTACTGGTCCAGCCCCCAGCTCGCGCCGTCGGCCCCC GCCCCCGATGCCTTCGCCCACCTGGCCATGTCCCTGTGCGCCGGCTCACTCTTCAACCTG GCCAACGGCCTCCTCATCAAGATGATCCGCGCCTACCCGTCACCTCCCGTCGTCCTCGCC TCCATCCATCGCGCGCTATCGGATTCTGGCCACCGTTCGCCGGCGGTGCTCGACGTCCTC GTGGATACCTACAAGAAGTCTGGGAGGGTGCAGGACGCCGCGGAGGTCGTCCTGATGATG AGAGATCGGGGCATGGCTCCCAGCATTCGGTGCTGCAACGCGCTGTTGAAGGATCTGCTG CGCGCGGACGCCATGGCTCTGCTTTGGAAGGTGCGAGAGTTCATGGTTGGCGCTGGGATT TCCCCGGATGTGTATACGTACTCGACTCTGATCGAAGCCTACTGCAAGGTCCGGGAATTT GATACTGCCAAGAAGGTGCTTGTGGAAATGCGTGAGAGGGGGTGCGGCCTGAACACCGTA ACCTACAATGTGCTGATTGCTGGGTTATGCAGGTCTGGGGCTGTCGAAGAGGCGTTTGGG TTCAAGAAGGACATGGAGGATTATGGACTAGTTCCTGACGGGTTTACCTATGGCGCACTC ATTAATGGACTGTGCAAGAGCCGTAGGTCAAATGAGGCGAAGGCATTGTTGGACGAGATG TCTTGTGCTGAGCTAAAGCCTAATGTCGTAGTTTATGCCAATCTGATTGATGGGTTTATG AGGGAGGGCAATGCAGATGAGGCGTTTAAGATGATAAAGGAGATGGTTGCTGCTGGTGTG CAGCCAAACAAAATTACCTATGACAATCTTGTTCGGGGACTATGTAAGATGGGGCAGATG GACAGGGCTTCTCTACTTTTGAAGCAAATGGTCAGAGATAGCCATAGGCCTGATACCATC ACGTACAATCTCATTATTGAAGGACATTTCCGTCATCATAGCAAAAAGGATGCTTTTCGG CTTCTTAGTGAAATGGAGAATGCTGGTATTTCCCCTAATGTATATACTTATAGCATAATG ATTCATGGGCTATGCCAAAGTGGTGAACCAGAAAAGGCAAGTGATCTCCTTGAGGAAATG ACTACAAAAGGATTGAAGCCTAATGCATTTGTTTATGCGCCTCTTATCTCAGGGTACTGT AGAGAAGGTAATGTTTCATTGGCATGTGAAATTTTTGATAAGATGACAAAGGTGAATGTA CTCCCTGATTTGTACTGCTACAATTCTCTTATATTTGGACTATCTAAGGTGGGAAGGGTG GAGGAATCTACAAAGTACTTTGCTCAGATGCAGGAGAGAGGATTGCTGCCAAATGAATTC ACATACAGTGGCCTCATTCATGGGTATCTAAAGAATGGTGATCTAGAAAGTGCTGAACAG TTAGTGCAGCGGATGCTTGACACTGGACTAAAACCAAATGATGTTATCTACATTGATCTC CTAGAAAGCTACTTTAAGTCAGATGATATTGAAAAGGTGTCCTCTACTTTCAAGTCCATG TTAGACCAGGGAGTTATGCTTGACAACCGTATCTATGGAATCTTGATTCATAATCTGTCC AGTTCTGGAAATATGGAAGCAGCATTTAGGGTTCTTTCAGGGATTGAGAAGAATGGATCT GTTCCGGATGTGCATGTGTACAGCTCGTTGATATCAGGTCTTTGCAAGACAGCTGACAGG GAAAAAGCTTTTGGTATTCTTGATGAAATGTCTAAGAAGGGAGTAGATCCTAATATTGTA TGCTATAATGCCCTAATTGATGGGCTGTGCAAGTCTGGTGATATTTCTTATGCCCGCAAT GTCTTCAATAGCATATTAGCTAAGGGATTAGTGCCAAACTGTGTGACATACACAAGTTTG ATTGATGGAAGCTGCAAAGTTGGTGACATCAGCAATGCATTCTATCTTTATAATGAAATG CTAGCAACAGGTATAACACCAGATGCTTTTGTCTATAGTGTACTTACCACTGGCTGCTCT AGTGCTGGTGACCTTGAGCAGGCAATGTTTCTGATTGAGGAAATGTTTCTTAGGGGACAT GCAAGTATTTCTTCTTTCAATAATTTAGTTGATGGTTTCTGCAAACGTGGAAAGATGCAG GAAACTTTGAAGTTGTTGCATGTGATAATGGGCAGGGGCCTAGTACCTAATGCCCTGACT ATTGAAAACATCATCAGTGGACTTAGTGAGGCTGGAAAACTCAGTGAAGTGCACACAATT TTTGTTGAGTTGCAGCAGAAAACTTCAGAAAGCGCTGCCCGCCACTTTTCCTCATTGTTT ATGGACATGATAAATCAAGGAAAAATTCCTCTTGATGTGGTTGATGACATGATTCGAGAT CATTGTAAAGAAGGAAATCTGGACAAGGCTTTAATGCTGCGAGATGTTATTGTTGCGAAA AGTGCACCAATGGGCTGCTCGTCCTATCTTGCTATAGTGGACAATCTATGCCGGAAGGGA AAATTAAGTGAAGCGTTGAATTTGCTGAAAGAAATGGACAAGAGAGGTATTTGTCCCAGT GAGAATCAATGCTTGATACTATTAACTAATCTTCATACATCTGGATATATCCAAGAACAC AATACGGTACTTGATAATATGTTGTGTCACAAGTGGTTACAGAAGGACAGCAAATTCTGT AATTCAGCTGGTGATAATCTGGAATCTGTCAATGCAGAATAA

Peptide Sequence

PEP ID	Os07t0300200-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:11845814:11849019:1 gene:Os07g0300200 transcript:Os07t0300200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN likes 5 description:Pentatricopeptide repeat domain containing protein. (Os07t0300200-01)
Sequence	MLLAARGRRHPFAAARLLPIPLSSGPSFASSTTTTTSNGACSSSAADPDAVAAEVATLLS RCSGDWRLAVSSSDLPSRLSPAAISSLVRRRPSPSSPRLHPKLLLDFFYWSSPQLAPSAP APDAFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVL VDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGI SPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFG FKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFM REGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTI TYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV EESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDL LESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGS VPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARN VFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCS SAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALT IENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRD HCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPS ENQCLILLTNLHTSGYIQEHNTVLDNMLCHKWLQKDSKFCNSAGDNLESVNAE

Transcript Sequence

Transcript ID	Os07t0300200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:11845814:11849019:1 gene:Os07g0300200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN likes 5 description:Pentatricopeptide repeat domain containing protein. (Os07t0300200-01)
Sequence	ACAGAAGATCCCGTTCCCGTGCTCTGTTGCCAATTCTCCCCCACCACCATGCTCCTCGCC GCGCGCGGCCGCCGTCACCCCTTCGCCGCCGCGCGCCTCCTTCCGATCCCGCTTTCCTCC GGCCCCTCCTTCGCCTCCTCCACCACCACCACGACCTCCAATGGCGCCTGTTCGTCCTCC GCCGCGGACCCCGACGCCGTGGCCGCCGAGGTGGCCACCCTCCTCTCCCGCTGCTCCGGC GACTGGAGGCTCGCCGTCTCCTCCTCCGACCTCCCCTCCCGCCTCTCCCCCGCCGCCATC TCCTCCCTCGTCCGACGACGCCCGTCCCCCTCCTCCCCGCGCCTCCACCCTAAGCTCCTC CTCGACTTCTTCTACTGGTCCAGCCCCCAGCTCGCGCCGTCGGCCCCCGCCCCCGATGCC TTCGCCCACCTGGCCATGTCCCTGTGCGCCGGCTCACTCTTCAACCTGGCCAACGGCCTC CTCATCAAGATGATCCGCGCCTACCCGTCACCTCCCGTCGTCCTCGCCTCCATCCATCGC GCGCTATCGGATTCTGGCCACCGTTCGCCGGCGGTGCTCGACGTCCTCGTGGATACCTAC AAGAAGTCTGGGAGGGTGCAGGACGCCGCGGAGGTCGTCCTGATGATGAGAGATCGGGGC ATGGCTCCCAGCATTCGGTGCTGCAACGCGCTGTTGAAGGATCTGCTGCGCGCGGACGCC ATGGCTCTGCTTTGGAAGGTGCGAGAGTTCATGGTTGGCGCTGGGATTTCCCCGGATGTG TATACGTACTCGACTCTGATCGAAGCCTACTGCAAGGTCCGGGAATTTGATACTGCCAAG AAGGTGCTTGTGGAAATGCGTGAGAGGGGGTGCGGCCTGAACACCGTAACCTACAATGTG CTGATTGCTGGGTTATGCAGGTCTGGGGCTGTCGAAGAGGCGTTTGGGTTCAAGAAGGAC ATGGAGGATTATGGACTAGTTCCTGACGGGTTTACCTATGGCGCACTCATTAATGGACTG TGCAAGAGCCGTAGGTCAAATGAGGCGAAGGCATTGTTGGACGAGATGTCTTGTGCTGAG CTAAAGCCTAATGTCGTAGTTTATGCCAATCTGATTGATGGGTTTATGAGGGAGGGCAAT GCAGATGAGGCGTTTAAGATGATAAAGGAGATGGTTGCTGCTGGTGTGCAGCCAAACAAA ATTACCTATGACAATCTTGTTCGGGGACTATGTAAGATGGGGCAGATGGACAGGGCTTCT CTACTTTTGAAGCAAATGGTCAGAGATAGCCATAGGCCTGATACCATCACGTACAATCTC ATTATTGAAGGACATTTCCGTCATCATAGCAAAAAGGATGCTTTTCGGCTTCTTAGTGAA ATGGAGAATGCTGGTATTTCCCCTAATGTATATACTTATAGCATAATGATTCATGGGCTA TGCCAAAGTGGTGAACCAGAAAAGGCAAGTGATCTCCTTGAGGAAATGACTACAAAAGGA TTGAAGCCTAATGCATTTGTTTATGCGCCTCTTATCTCAGGGTACTGTAGAGAAGGTAAT GTTTCATTGGCATGTGAAATTTTTGATAAGATGACAAAGGTGAATGTACTCCCTGATTTG TACTGCTACAATTCTCTTATATTTGGACTATCTAAGGTGGGAAGGGTGGAGGAATCTACA AAGTACTTTGCTCAGATGCAGGAGAGAGGATTGCTGCCAAATGAATTCACATACAGTGGC CTCATTCATGGGTATCTAAAGAATGGTGATCTAGAAAGTGCTGAACAGTTAGTGCAGCGG ATGCTTGACACTGGACTAAAACCAAATGATGTTATCTACATTGATCTCCTAGAAAGCTAC TTTAAGTCAGATGATATTGAAAAGGTGTCCTCTACTTTCAAGTCCATGTTAGACCAGGGA GTTATGCTTGACAACCGTATCTATGGAATCTTGATTCATAATCTGTCCAGTTCTGGAAAT ATGGAAGCAGCATTTAGGGTTCTTTCAGGGATTGAGAAGAATGGATCTGTTCCGGATGTG CATGTGTACAGCTCGTTGATATCAGGTCTTTGCAAGACAGCTGACAGGGAAAAAGCTTTT GGTATTCTTGATGAAATGTCTAAGAAGGGAGTAGATCCTAATATTGTATGCTATAATGCC CTAATTGATGGGCTGTGCAAGTCTGGTGATATTTCTTATGCCCGCAATGTCTTCAATAGC ATATTAGCTAAGGGATTAGTGCCAAACTGTGTGACATACACAAGTTTGATTGATGGAAGC TGCAAAGTTGGTGACATCAGCAATGCATTCTATCTTTATAATGAAATGCTAGCAACAGGT ATAACACCAGATGCTTTTGTCTATAGTGTACTTACCACTGGCTGCTCTAGTGCTGGTGAC CTTGAGCAGGCAATGTTTCTGATTGAGGAAATGTTTCTTAGGGGACATGCAAGTATTTCT TCTTTCAATAATTTAGTTGATGGTTTCTGCAAACGTGGAAAGATGCAGGAAACTTTGAAG TTGTTGCATGTGATAATGGGCAGGGGCCTAGTACCTAATGCCCTGACTATTGAAAACATC ATCAGTGGACTTAGTGAGGCTGGAAAACTCAGTGAAGTGCACACAATTTTTGTTGAGTTG CAGCAGAAAACTTCAGAAAGCGCTGCCCGCCACTTTTCCTCATTGTTTATGGACATGATA AATCAAGGAAAAATTCCTCTTGATGTGGTTGATGACATGATTCGAGATCATTGTAAAGAA GGAAATCTGGACAAGGCTTTAATGCTGCGAGATGTTATTGTTGCGAAAAGTGCACCAATG GGCTGCTCGTCCTATCTTGCTATAGTGGACAATCTATGCCGGAAGGGAAAATTAAGTGAA GCGTTGAATTTGCTGAAAGAAATGGACAAGAGAGGTATTTGTCCCAGTGAGAATCAATGC TTGATACTATTAACTAATCTTCATACATCTGGATATATCCAAGAACACAATACGGTACTT GATAATATGTTGTGTCACAAGTGGTTACAGAAGGACAGCAAATTCTGTAATTCAGCTGGT GATAATCTGGAATCTGTCAATGCAGAATAAACATAGAGCAGAATCCTTCCTATAAAAGAA AGTCTGATTCTATTATTCATGTTGCGAATGCATGTCGTAGCCTTGTTTTTGTTTATTGAT GAGGAATTAAACAGATTAATTTTTTC