Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0272400-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:10064207:10068002:1 gene:Os07g0272400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0272400-01)
Sequence

ATGACCATGGCGACCTCGCGAGAGGTTTTCAAGTATCACCCTTTGCCTACACCGGGAGTG
GAAAACAGTTTTAAGGATGAGATCCAATCCAAGGTTTTGGGCACGATAGGGGATGTGATG
AACTCATTTGATCCAAAGTCATTCCCACAGCATGTAGAAGGAGCACTGGGAACAGCTGGA
AACATCATCAATTCCTTTGAGTCAAAATTGGCTGAGCACAAGCAATTTGATTTTGGTGGC
AAAACCAATTTTTATGGCTATGATTGTGCGGACGATGGTTGGGGATCTGCACCCTTGAAG
GCAGATAAGCCGGTAAACCTTAGAAATCTGCTGGGTGGTTTAATTGCAATCATCAGTCGT
GGCGGCAAAAATTCTGAAATTCAACCGCCAAAGGACACTAAGTCTAGTGTCGCATTCTTA
GGGTCAGGTAGCGATGGAGAAACATTCTTGCACGCCTCAGTCTATGTGCCAAGTGCTCCA
CCATTGCTTGACGAAGAAGCTCTGAATTACAATGTGTATAGGGTTGTGATTGAAGCAGAA
CCACCAGAATGGTTACCTGATAGTTATGCTAACTCATGCATGCAATGCGCTGCTTCTTTT
ACTGTTGTTACTCGTGGAAGGCATCATTGTCGATTTTGTGGAGGGATATTTTGTAGGACA
TGCTCAAAAGGCAGATGTCTGTTGCCAGCCAAGTTCCGTGAGCGGAATCCGCAAAGGGTT
TGTGATGCTTGTTATGATAGGCTTGATCCGTTGCAGAACTTATTCATTAATTCTATTAGC
AATGCCACACAGACTGCAAAGCATGATGTTATGGATTGGACTAGTACCAGGGGGTGGTTG
AATTTGCCTATTGGATTAACAATGGAACATGAGATTTACAAGGCCGCAAATTCTGTGAGG
AGCTATAGCCAGATTGCAAGGCTAAACCCCGAAAGGTCTATTCCTCATGCAGTCCTTAGT
GGAGCAAGTGGGCTTGCTATCCTGACAGTTGTAAAAGCTGGTGCACTTCTTACATACAAA
CTTGGAACTGGCCTAGTAGTTGCTCGAAGATCAGATGGATCTTGGTCACCACCATCAGCA
ATCGTTTCAGTTGGGTTAGGATGGGGAGCACAGGTTGGTGCTGAGCTAATGGATTTCATC
ATAGTGCTTCGTGGTCTGGAAGCTGTCAGGACTTTTAGCAGCCAGATGCATTTTTCTGTT
GGGGCAGGTTTAAGTGCTGCAGCAGGGCCTGTTGGTAGAGTGCTAGAGGCTGACTTGAGA
GCTGGTGATAAAGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAGGTGCATTCATT
GGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGGACGCAAATCTGCGGTTTTAC
GGCGACCCGTATCTGACAACCAGCGATATTCTCATGGGGGATATGCAGAGACCAAATGCT
GCCAAGTTTCTGTACACAGCGTTGGATGGCCTGTACTCTGGGCTGAGTCGTTAG

Peptide Sequence

PEP ID

Os07t0272400-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:10064207:10068002:1 gene:Os07g0272400 transcript:Os07t0272400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0272400-01)
Sequence

MTMATSREVFKYHPLPTPGVENSFKDEIQSKVLGTIGDVMNSFDPKSFPQHVEGALGTAG
NIINSFESKLAEHKQFDFGGKTNFYGYDCADDGWGSAPLKADKPVNLRNLLGGLIAIISR
GGKNSEIQPPKDTKSSVAFLGSGSDGETFLHASVYVPSAPPLLDEEALNYNVYRVVIEAE
PPEWLPDSYANSCMQCAASFTVVTRGRHHCRFCGGIFCRTCSKGRCLLPAKFRERNPQRV
CDACYDRLDPLQNLFINSISNATQTAKHDVMDWTSTRGWLNLPIGLTMEHEIYKAANSVR
SYSQIARLNPERSIPHAVLSGASGLAILTVVKAGALLTYKLGTGLVVARRSDGSWSPPSA
IVSVGLGWGAQVGAELMDFIIVLRGLEAVRTFSSQMHFSVGAGLSAAAGPVGRVLEADLR
AGDKGSGVCYTYSCSKGAFIGVSLEGNFVATRRDANLRFYGDPYLTTSDILMGDMQRPNA
AKFLYTALDGLYSGLSR

Transcript Sequence

Transcript ID

Os07t0272400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:10064207:10068002:1 gene:Os07g0272400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0272400-01)
Sequence

GGTTGGGCTTAAACAACAAGCGAGCCTTCGCACGCCTTCGTTGGCCGATCGATCTCCCCG
TGGACGGACGGAGGGACCCACCCATCCACGTCGCCGCTATTTTCGCGGCGCGCGCGCCGC
CGATCTCCGATCACCGGCGGCTGGGTGCGAGCCCCGCAACCGCAAGGCGTCCCTGCTGCT
ACTCCCGCCCGCATCCTCCCTGCGCCCAACTCCAATCTCTTCTCCGCCTCCAACTCCAGG
AGGTCGCTCTCCTCCTCGCTAATTTCGCCCGCCTCCGCCGATTTCCTCGGGGGGAGGGGA
GCAGCGGTAGGTGCCGTACGTCTCCGTAACTTTTGTGTGGTAGTAATTTATGACCATGGC
GACCTCGCGAGAGGTTTTCAAGTATCACCCTTTGCCTACACCGGGAGTGGAAAACAGTTT
TAAGGATGAGATCCAATCCAAGGTTTTGGGCACGATAGGGGATGTGATGAACTCATTTGA
TCCAAAGTCATTCCCACAGCATGTAGAAGGAGCACTGGGAACAGCTGGAAACATCATCAA
TTCCTTTGAGTCAAAATTGGCTGAGCACAAGCAATTTGATTTTGGTGGCAAAACCAATTT
TTATGGCTATGATTGTGCGGACGATGGTTGGGGATCTGCACCCTTGAAGGCAGATAAGCC
GGTAAACCTTAGAAATCTGCTGGGTGGTTTAATTGCAATCATCAGTCGTGGCGGCAAAAA
TTCTGAAATTCAACCGCCAAAGGACACTAAGTCTAGTGTCGCATTCTTAGGGTCAGGTAG
CGATGGAGAAACATTCTTGCACGCCTCAGTCTATGTGCCAAGTGCTCCACCATTGCTTGA
CGAAGAAGCTCTGAATTACAATGTGTATAGGGTTGTGATTGAAGCAGAACCACCAGAATG
GTTACCTGATAGTTATGCTAACTCATGCATGCAATGCGCTGCTTCTTTTACTGTTGTTAC
TCGTGGAAGGCATCATTGTCGATTTTGTGGAGGGATATTTTGTAGGACATGCTCAAAAGG
CAGATGTCTGTTGCCAGCCAAGTTCCGTGAGCGGAATCCGCAAAGGGTTTGTGATGCTTG
TTATGATAGGCTTGATCCGTTGCAGAACTTATTCATTAATTCTATTAGCAATGCCACACA
GACTGCAAAGCATGATGTTATGGATTGGACTAGTACCAGGGGGTGGTTGAATTTGCCTAT
TGGATTAACAATGGAACATGAGATTTACAAGGCCGCAAATTCTGTGAGGAGCTATAGCCA
GATTGCAAGGCTAAACCCCGAAAGGTCTATTCCTCATGCAGTCCTTAGTGGAGCAAGTGG
GCTTGCTATCCTGACAGTTGTAAAAGCTGGTGCACTTCTTACATACAAACTTGGAACTGG
CCTAGTAGTTGCTCGAAGATCAGATGGATCTTGGTCACCACCATCAGCAATCGTTTCAGT
TGGGTTAGGATGGGGAGCACAGGTTGGTGCTGAGCTAATGGATTTCATCATAGTGCTTCG
TGGTCTGGAAGCTGTCAGGACTTTTAGCAGCCAGATGCATTTTTCTGTTGGGGCAGGTTT
AAGTGCTGCAGCAGGGCCTGTTGGTAGAGTGCTAGAGGCTGACTTGAGAGCTGGTGATAA
AGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAGGTGCATTCATTGGTGTTTCGTT
GGAAGGGAACTTCGTTGCAACCCGAAGGGACGCAAATCTGCGGTTTTACGGCGACCCGTA
TCTGACAACCAGCGATATTCTCATGGGGGATATGCAGAGACCAAATGCTGCCAAGTTTCT
GTACACAGCGTTGGATGGCCTGTACTCTGGGCTGAGTCGTTAGGACGATGTAAATCTCAA
CTGTACATATTTGCTCTGATTCTTCTGGCTGTAGGCGTTTTTAGCTAGGCTTATTGATTC
TTCTAAGTGCTTGCCATTGTAGCTAGGTCCACTGCTATCAGTCAAGTTCCAGATGGCAAG
TCAAAACCTCTATAGTTTACATGTAAATATATCTTCCTATGATACATACACCGCATTGTT
CGAAGTTTATCATCGGATATTTGTGGTGGTATGCAACTATAGAAGCTGTTACATGTTACT
GTATCATGGATCATCGAATTT