Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0259400-00
CDS Infomation

cds chromosome:IRGSP-1.0:7:9022181:9023849:1 gene:Os07g0259400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0259400-00)
Sequence

ATGCGGCGCGCCGCTGCCCTGCTCCGCCTCCTCCGCTCCGGGGCCAGCGCCGGCGTCCGC
GGCCGCCCCGCCTGCGCGGCGGTCCACCCGCTCGCCGTCAAGTCCGGGAGCGGCTCCGAC
GCCCGCGTGGCCACCGCGCTCGCCGACGCCTACGCCAAGTCCGGACTCGTCGACCGCGCC
CGCAGGGTGTTCGACGAAACGCCGCTCCGGGACCAGGTGCTCTGGAACGTCATGGTCTCC
TGCTACTCTTCGCACGGCCTTGTGAGGGAGTGCTGGGATGTCTTTGGCTCCATGAGGCGG
TCTGGTTTTCCCGGCGATGGCTTCACGTTCAGTGCCTTGCTCAGTGTGCGTGCTTCTTCT
TCTTCTTCGTGCTATGACCATGCCAACCTGTTGCTGGTCCTGGGAAGCTCGGTGCATGGG
ATTGTGATCAGGTTGGGTCTCCACCTGGATGTGGTGGTAGCCACTGCGCTCCTTGATATG
TATGCCAAATGCGGCCAAGTTGCTGAGGCTAGCCGGGTGTTTGATGCCATGGTGCTGAGA
AATACCGTATCCTGGAATGCAATCATTGTTTGCTATGGTAAGCATGACAGAGGCAAGGAA
GCCTTCGACCTTTTCGTGTCGATGATGAGACATGGGTTTTGCCCTGACGAGCTTACGCTT
GCCAGTCTACTTAGTTCCTGTGCCGACATGGCGGCTGCTAATGAGGCTACTCAGCTTCAT
GCTTACACTGTTAGAAGAGGCTTGCAAGACTTTCTACAAGTGGGCAATGCCCTTATCATG
GCTTATGGTAAGAATGGTTTTGTTCAAGAAGCAAAACGAACATTTGGTATGATCCATAAC
CCAGATCTAGTTACATGGTCATCAATGGTTTCTTCTTTTGCATATCTTGGACTTGCCAAG
AGTGCAATCGACCTGTTTGACAGAATGCTCCAACAAGGCATACGGGCTGATGGCATTGCA
TTTCTTGGAGTTCTTTCTGCGTGCAGTCATGCTGGGCTCATTGAAGATGGCTTCAAGTAC
TTTCTTCTAATGACGAGGGACTACAAAATTGATCCAACTCCGCAGCATCTTGCTTGTCTA
GTTGATCTCTTAGGGAGAGCTGGTAGGATTAGAGATGCCTACGAATTTTTGGTCAATATG
TCCTGCGACGCAAATGTTGATGTCATTGGAGCTTTCCTTGGTGCTTGCAGAATGCGAGGA
AACATTGAGTCAGCAAAGTGGGCTGCCTCTAGGCTATTTAGTCTAAAGCCAGATGATCCA
ATCAATTACCTGCTTATATCTAATACGTATGCTGCTGCAGGAGATTGGAATGAGCTTGCA
AAGGTAAGAAGTGTAATGAGGAACATGTGTGGCAACAAGGTGCCGGGCTGTAGCTGGATA
GAGATAGGTGGAATTGTTCAGACATTTGTATCCAATGATATGATGCTCCATCAGTCAAGA
GAGATGCAAAGAATGATGGAACTTCTTGTTTCATTAGTGGAACAAGATTGCAATGGTGAT
GACACAATTTGCAATGATCCATCATCGATTTTAAAATGGCAAGATTTTTATCTGGCATTT
GATTAA

Peptide Sequence

PEP ID

Os07t0259400-00
PEP Infomation

pep chromosome:IRGSP-1.0:7:9022181:9023849:1 gene:Os07g0259400 transcript:Os07t0259400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0259400-00)
Sequence

MRRAAALLRLLRSGASAGVRGRPACAAVHPLAVKSGSGSDARVATALADAYAKSGLVDRA
RRVFDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLSVRASS
SSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLR
NTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLH
AYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAK
SAIDLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACL
VDLLGRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRMRGNIESAKWAASRLFSLKPDDP
INYLLISNTYAAAGDWNELAKVRSVMRNMCGNKVPGCSWIEIGGIVQTFVSNDMMLHQSR
EMQRMMELLVSLVEQDCNGDDTICNDPSSILKWQDFYLAFD

Transcript Sequence

Transcript ID

Os07t0259400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:9022181:9023849:1 gene:Os07g0259400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0259400-00)
Sequence

CCCAAACCGTGTCCCTCTCACTCCGCGCGTGCGGCTCACTGCTGGTTGTGACGGGCGGCG
ATGCCGCTGCGCCAGCGCCACCCCACCCCACCCGTTCGACGAAATGCGGCGCGCCGCTGC
CCTGCTCCGCCTCCTCCGCTCCGGGGCCAGCGCCGGCGTCCGCGGCCGCCCCGCCTGCGC
GGCGGTCCACCCGCTCGCCGTCAAGTCCGGGAGCGGCTCCGACGCCCGCGTGGCCACCGC
GCTCGCCGACGCCTACGCCAAGTCCGGACTCGTCGACCGCGCCCGCAGGGTGTTCGACGA
AACGCCGCTCCGGGACCAGGTGCTCTGGAACGTCATGGTCTCCTGCTACTCTTCGCACGG
CCTTGTGAGGGAGTGCTGGGATGTCTTTGGCTCCATGAGGCGGTCTGGTTTTCCCGGCGA
TGGCTTCACGTTCAGTGCCTTGCTCAGTGTGCGTGCTTCTTCTTCTTCTTCGTGCTATGA
CCATGCCAACCTGTTGCTGGTCCTGGGAAGCTCGGTGCATGGGATTGTGATCAGGTTGGG
TCTCCACCTGGATGTGGTGGTAGCCACTGCGCTCCTTGATATGTATGCCAAATGCGGCCA
AGTTGCTGAGGCTAGCCGGGTGTTTGATGCCATGGTGCTGAGAAATACCGTATCCTGGAA
TGCAATCATTGTTTGCTATGGTAAGCATGACAGAGGCAAGGAAGCCTTCGACCTTTTCGT
GTCGATGATGAGACATGGGTTTTGCCCTGACGAGCTTACGCTTGCCAGTCTACTTAGTTC
CTGTGCCGACATGGCGGCTGCTAATGAGGCTACTCAGCTTCATGCTTACACTGTTAGAAG
AGGCTTGCAAGACTTTCTACAAGTGGGCAATGCCCTTATCATGGCTTATGGTAAGAATGG
TTTTGTTCAAGAAGCAAAACGAACATTTGGTATGATCCATAACCCAGATCTAGTTACATG
GTCATCAATGGTTTCTTCTTTTGCATATCTTGGACTTGCCAAGAGTGCAATCGACCTGTT
TGACAGAATGCTCCAACAAGGCATACGGGCTGATGGCATTGCATTTCTTGGAGTTCTTTC
TGCGTGCAGTCATGCTGGGCTCATTGAAGATGGCTTCAAGTACTTTCTTCTAATGACGAG
GGACTACAAAATTGATCCAACTCCGCAGCATCTTGCTTGTCTAGTTGATCTCTTAGGGAG
AGCTGGTAGGATTAGAGATGCCTACGAATTTTTGGTCAATATGTCCTGCGACGCAAATGT
TGATGTCATTGGAGCTTTCCTTGGTGCTTGCAGAATGCGAGGAAACATTGAGTCAGCAAA
GTGGGCTGCCTCTAGGCTATTTAGTCTAAAGCCAGATGATCCAATCAATTACCTGCTTAT
ATCTAATACGTATGCTGCTGCAGGAGATTGGAATGAGCTTGCAAAGGTAAGAAGTGTAAT
GAGGAACATGTGTGGCAACAAGGTGCCGGGCTGTAGCTGGATAGAGATAGGTGGAATTGT
TCAGACATTTGTATCCAATGATATGATGCTCCATCAGTCAAGAGAGATGCAAAGAATGAT
GGAACTTCTTGTTTCATTAGTGGAACAAGATTGCAATGGTGATGACACAATTTGCAATGA
TCCATCATCGATTTTAAAATGGCAAGATTTTTATCTGGCATTTGATTAA