Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0252400-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:8496288:8501641:1 gene:Os07g0252400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE A6 description:Similar to Cellulose synthase-8. (Os07t0252400-01);Similar to Cellulose synthase BoCesA7. (Os07t0252400-02)
Sequence	ATGGAGGCGAGCGCGGGGCTGGTGGCGGGGTCGCACAACCGGAACGAGCTGGTGGTGATC CGGAGGGATGGAGGAGGAGGGGGAGGGGTTGGGGGGAGGAGGGCGGCGGAGGCGAAGGCG GCGTGCCAGATATGCGGCGACGACGTCGGGGAAGGGCCCGACGGGGAGCCGTTCGTGGCG TGCAACGAGTGCGCCTTCCCCGTCTGCCGCAACTGCTACGACTACGAGCGCCGCGAGGGC TCGCAGGCTTGCCCCCAGTGCAAGACCCGCTTCAAGCGCCTCAAGGGGTGCCCGCGGGTG GCCGGAGACGAGGAGGAGGACGGCGTGGACGACCTGGAGGGGGAGTTCGGCCTCGACGGC CGGGAGGACGACCCGCAGTACATCGCCGAGTCGATGCTGCGCGCGAACATGAGCTACGGC CGCGGCGGCGACCTGCAGCCGTTCCAGCCCATCCCCAATGTGCCGCTCCTCACCAATGGC CAGATGGTTGACGACATCCCGCCGGAGCAGCACGCGCTGGTGCCATCCTACATGGGGGGC GGCGGCGGCGGCGGGAAGAGGATCCACCCGCTCCCCTTCGCAGATCCGAGCGTTCCTGTG CAACCGAGATCCATGGACCCGTCCAAGGATCTCGCCGCCTACGGGTACGGGAGTGTGGCA TGGAAGGAGAGGATGGAGGGCTGGAAGCAGAAGCAGGAGCGGATGCAGCAGCTCAGGAGT GAGGGCGGCGGCGACTGGGATGGCGACGGCGATGCAGATCTGCCACTAATGGATGAAGCT CGACAACCACTATCTCGCAAAGTTCCAATTTCTTCAAGCCGAATTAATCCCTATAGGATG ATTATAATTATCCGGTTGGTGGTTTTGGGGTTCTTCTTCCACTACCGAGTGATGCATCCT GTGAATGATGCATTTGCTTTGTGGCTCATCTCTGTAATATGTGAAATCTGGTTTGCTATG TCTTGGATTCTTGATCAATTTCCAAAGTGGCTTCCCATAGAGAGGGAGACGTACCTGGAC CGCTTGTCACTGAGGTTTGACAAGGAAGGTCAGCCATCTCAACTTGCTCCAGTCGACTTC TTTGTCAGTACAGTTGATCCATCGAAGGAACCTCCCTTAGTCACAGCAAACACCGTCCTT TCCATCCTTTCTGTGGATTACCCAGTTGAAAAGGTTTCCTGCTATGTTTCTGATGATGGT GCTGCAATGCTCACATTTGAAGCACTGTCAGAAACATCTGAATTTGCAAAGAAATGGGTC CCTTTCTGCAAAAAGTTCAATATCGAGCCTCGTGCTCCAGAGTGGTACTTCCAGCAGAAG ATAGACTACCTGAAAGATAAGGTAGCAGCGTCCTTTGTTAGGGAGAGGAGAGCAATGAAG AGAGATTATGAGGAATTCAAGGTGAGGATCAACGCCTTGGTTGCCAAAGCCCAAAAGGTT CCAGAGGAAGGATGGACAATGCAGGACGGAAGCCCTTGGCCAGGCAACAATGTGCGCGAT CATCCTGGAATGATTCAGGTCTTCCTTGGCCAAAGTGGTGGCCGTGATGTGGAAGGAAAT GAGCTTCCTCGCTTGGTTTATGTCTCAAGAGAAAAGAGGCCAGGCTATAATCATCATAAG AAGGCTGGTGCTATGAATGCATTGGTCCGCGTCTCTGCTGTTCTTTCGAATGCTCCATAC CTATTGAACTTGGATTGTGATCACTACATCAACAATAGCAAGGCCATAAGGGAAGCGATG TGTTTCATGATGGATCCTTTGGTGGGGAAGAAAGTGTGCTATGTGCAGTTCCCTCAGAGG TTTGATGGTATTGACCGACATGATCGATATGCTAACCGGAACGTTGTCTTTTTCGATATC AACATGAAAGGTCTGGATGGAATTCAAGGCCCCATCTATGTTGGTACTGGATGTGTCTTC AGACGGCAAGCTCTCTATGGTTATGATGCGCCAAAAACAAAGAAGCCCCCATCCAGAACT TGCAATTGCTGGCCTAAATGGTGCTGCTGCTGCTGTTGTGGTAACAGGCATACTAAGAAG AAGACAACAAAACCTAAGCCGGAGAAAAAGAAAAGACTGTTTTTCAAGAAAGCAGAAAAT CAGTCTCCTGCATATGCTCTTGGTGAAATTGAGGAAGGTGCTCCAGGAGCTGAGACAGAC AAAGCTGGAATTGTGAATCAACAGAAGCTAGAAAAGAAATTTGGGCAGTCTTCTGTTTTT GTTGCATCAACTTTGCTTGAAAATGGTGGAACCCTGAAGAGTGCAAGTCCAGCTTCTCTA CTGAAGGAAGCTATACATGTTATTAGCTGTGGTTACGAAGACAAGACAGACTGGGGGAAG GAGATTGGCTGGATCTATGGTTCAATTACAGAAGATATCTTGACTGGGTTTAAGATGCAC TGCCATGGTTGGCGGTCTATTTACTGCATTCCAAAGCGGCCAGCATTCAAAGGTTCTGCA CCTCTTAATCTTTCGGATCGTCTTCACCAGGTCCTTCGTTGGGCTCTTGGATCTGTTGAA ATTTTCTTCAGCAAACATTGCCCACTTTGGTATGGGTATGGTGGTGGCCTGAAATTTTTG GAAAGATTTTCTTATATTAACTCTATCGTATATCCCTGGACATCCATTCCACTTCTGGCT TACTGTACCTTGCCTGCCATATGCTTGCTCACTGGGAAGTTTATCACTCCAGAGCTCACC AATGTTGCTAGTCTATGGTTCATGTCGCTTTTCATCTGTATTTTTGTCACTGGCATCCTT GAAATGAGATGGAGTGGTGTGGCCATCGATGACTGGTGGAGGAATGAGCAGTTTTGGGTC ATTGGAGGTGTTTCTTCACATCTCTTCGCTGTATTCCAAGGACTTCTGAAAGTCCTTGCT GGTGTTGATACCAGCTTCACTGTGACATCAAAGGCCGGAGATGATGAAGAGTTCTCAGAG CTATACACGTTCAAATGGACCACCTTGTTGATACCTCCAACTACACTGCTGCTGTTGAAC TTCATTGGGGTTGTAGCTGGAGTTTCTAATGCTATCAACAATGGATATGAATCATGGGGA CCTCTGTTCGGGAAGCTCTTCTTTGCATTCTGGGTGATTGTCCATCTATATCCGTTCCTC AAGGGTTTGGTTGGAAGGCAAAACAGGACACCAACGATTGTTATCGTCTGGTCCATTCTA CTGGCTTCAATCTTCTCACTTCTATGGGTCCGGATCGATCCTTTCCTTGCGAAGAATAAT GGCCCTCTTCTGGAGGAATGTGGTCTGGATTGTAACTAA

Peptide Sequence

PEP ID	Os07t0252400-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:8496288:8501641:1 gene:Os07g0252400 transcript:Os07t0252400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE A6 description:Similar to Cellulose synthase-8. (Os07t0252400-01);Similar to Cellulose synthase BoCesA7. (Os07t0252400-02)
Sequence	MEASAGLVAGSHNRNELVVIRRDGGGGGGVGGRRAAEAKAACQICGDDVGEGPDGEPFVA CNECAFPVCRNCYDYERREGSQACPQCKTRFKRLKGCPRVAGDEEEDGVDDLEGEFGLDG REDDPQYIAESMLRANMSYGRGGDLQPFQPIPNVPLLTNGQMVDDIPPEQHALVPSYMGG GGGGGKRIHPLPFADPSVPVQPRSMDPSKDLAAYGYGSVAWKERMEGWKQKQERMQQLRS EGGGDWDGDGDADLPLMDEARQPLSRKVPISSSRINPYRMIIIIRLVVLGFFFHYRVMHP VNDAFALWLISVICEIWFAMSWILDQFPKWLPIERETYLDRLSLRFDKEGQPSQLAPVDF FVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWV PFCKKFNIEPRAPEWYFQQKIDYLKDKVAASFVRERRAMKRDYEEFKVRINALVAKAQKV PEEGWTMQDGSPWPGNNVRDHPGMIQVFLGQSGGRDVEGNELPRLVYVSREKRPGYNHHK KAGAMNALVRVSAVLSNAPYLLNLDCDHYINNSKAIREAMCFMMDPLVGKKVCYVQFPQR FDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKTKKPPSRT CNCWPKWCCCCCCGNRHTKKKTTKPKPEKKKRLFFKKAENQSPAYALGEIEEGAPGAETD KAGIVNQQKLEKKFGQSSVFVASTLLENGGTLKSASPASLLKEAIHVISCGYEDKTDWGK EIGWIYGSITEDILTGFKMHCHGWRSIYCIPKRPAFKGSAPLNLSDRLHQVLRWALGSVE IFFSKHCPLWYGYGGGLKFLERFSYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELT NVASLWFMSLFICIFVTGILEMRWSGVAIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVLA GVDTSFTVTSKAGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWG PLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKNN GPLLEECGLDCN

Transcript Sequence

Transcript ID	Os07t0252400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:8496288:8501641:1 gene:Os07g0252400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE A6 description:Similar to Cellulose synthase-8. (Os07t0252400-01);Similar to Cellulose synthase BoCesA7. (Os07t0252400-02)
Sequence	ATTTCCTCCTCCTCCCCCACGCGGCGCACCAGCTATCGCCGCCGCCGCCGACGAGGAGGG TGCGATGGAGGCGAGCGCGGGGCTGGTGGCGGGGTCGCACAACCGGAACGAGCTGGTGGT GATCCGGAGGGATGGAGGAGGAGGGGGAGGGGTTGGGGGGAGGAGGGCGGCGGAGGCGAA GGCGGCGTGCCAGATATGCGGCGACGACGTCGGGGAAGGGCCCGACGGGGAGCCGTTCGT GGCGTGCAACGAGTGCGCCTTCCCCGTCTGCCGCAACTGCTACGACTACGAGCGCCGCGA GGGCTCGCAGGCTTGCCCCCAGTGCAAGACCCGCTTCAAGCGCCTCAAGGGGTGCCCGCG GGTGGCCGGAGACGAGGAGGAGGACGGCGTGGACGACCTGGAGGGGGAGTTCGGCCTCGA CGGCCGGGAGGACGACCCGCAGTACATCGCCGAGTCGATGCTGCGCGCGAACATGAGCTA CGGCCGCGGCGGCGACCTGCAGCCGTTCCAGCCCATCCCCAATGTGCCGCTCCTCACCAA TGGCCAGATGGTTGACGACATCCCGCCGGAGCAGCACGCGCTGGTGCCATCCTACATGGG GGGCGGCGGCGGCGGCGGGAAGAGGATCCACCCGCTCCCCTTCGCAGATCCGAGCGTTCC TGTGCAACCGAGATCCATGGACCCGTCCAAGGATCTCGCCGCCTACGGGTACGGGAGTGT GGCATGGAAGGAGAGGATGGAGGGCTGGAAGCAGAAGCAGGAGCGGATGCAGCAGCTCAG GAGTGAGGGCGGCGGCGACTGGGATGGCGACGGCGATGCAGATCTGCCACTAATGGATGA AGCTCGACAACCACTATCTCGCAAAGTTCCAATTTCTTCAAGCCGAATTAATCCCTATAG GATGATTATAATTATCCGGTTGGTGGTTTTGGGGTTCTTCTTCCACTACCGAGTGATGCA TCCTGTGAATGATGCATTTGCTTTGTGGCTCATCTCTGTAATATGTGAAATCTGGTTTGC TATGTCTTGGATTCTTGATCAATTTCCAAAGTGGCTTCCCATAGAGAGGGAGACGTACCT GGACCGCTTGTCACTGAGGTTTGACAAGGAAGGTCAGCCATCTCAACTTGCTCCAGTCGA CTTCTTTGTCAGTACAGTTGATCCATCGAAGGAACCTCCCTTAGTCACAGCAAACACCGT CCTTTCCATCCTTTCTGTGGATTACCCAGTTGAAAAGGTTTCCTGCTATGTTTCTGATGA TGGTGCTGCAATGCTCACATTTGAAGCACTGTCAGAAACATCTGAATTTGCAAAGAAATG GGTCCCTTTCTGCAAAAAGTTCAATATCGAGCCTCGTGCTCCAGAGTGGTACTTCCAGCA GAAGATAGACTACCTGAAAGATAAGGTAGCAGCGTCCTTTGTTAGGGAGAGGAGAGCAAT GAAGAGAGATTATGAGGAATTCAAGGTGAGGATCAACGCCTTGGTTGCCAAAGCCCAAAA GGTTCCAGAGGAAGGATGGACAATGCAGGACGGAAGCCCTTGGCCAGGCAACAATGTGCG CGATCATCCTGGAATGATTCAGGTCTTCCTTGGCCAAAGTGGTGGCCGTGATGTGGAAGG AAATGAGCTTCCTCGCTTGGTTTATGTCTCAAGAGAAAAGAGGCCAGGCTATAATCATCA TAAGAAGGCTGGTGCTATGAATGCATTGGTCCGCGTCTCTGCTGTTCTTTCGAATGCTCC ATACCTATTGAACTTGGATTGTGATCACTACATCAACAATAGCAAGGCCATAAGGGAAGC GATGTGTTTCATGATGGATCCTTTGGTGGGGAAGAAAGTGTGCTATGTGCAGTTCCCTCA GAGGTTTGATGGTATTGACCGACATGATCGATATGCTAACCGGAACGTTGTCTTTTTCGA TATCAACATGAAAGGTCTGGATGGAATTCAAGGCCCCATCTATGTTGGTACTGGATGTGT CTTCAGACGGCAAGCTCTCTATGGTTATGATGCGCCAAAAACAAAGAAGCCCCCATCCAG AACTTGCAATTGCTGGCCTAAATGGTGCTGCTGCTGCTGTTGTGGTAACAGGCATACTAA GAAGAAGACAACAAAACCTAAGCCGGAGAAAAAGAAAAGACTGTTTTTCAAGAAAGCAGA AAATCAGTCTCCTGCATATGCTCTTGGTGAAATTGAGGAAGGTGCTCCAGGAGCTGAGAC AGACAAAGCTGGAATTGTGAATCAACAGAAGCTAGAAAAGAAATTTGGGCAGTCTTCTGT TTTTGTTGCATCAACTTTGCTTGAAAATGGTGGAACCCTGAAGAGTGCAAGTCCAGCTTC TCTACTGAAGGAAGCTATACATGTTATTAGCTGTGGTTACGAAGACAAGACAGACTGGGG GAAGGAGATTGGCTGGATCTATGGTTCAATTACAGAAGATATCTTGACTGGGTTTAAGAT GCACTGCCATGGTTGGCGGTCTATTTACTGCATTCCAAAGCGGCCAGCATTCAAAGGTTC TGCACCTCTTAATCTTTCGGATCGTCTTCACCAGGTCCTTCGTTGGGCTCTTGGATCTGT TGAAATTTTCTTCAGCAAACATTGCCCACTTTGGTATGGGTATGGTGGTGGCCTGAAATT TTTGGAAAGATTTTCTTATATTAACTCTATCGTATATCCCTGGACATCCATTCCACTTCT GGCTTACTGTACCTTGCCTGCCATATGCTTGCTCACTGGGAAGTTTATCACTCCAGAGCT CACCAATGTTGCTAGTCTATGGTTCATGTCGCTTTTCATCTGTATTTTTGTCACTGGCAT CCTTGAAATGAGATGGAGTGGTGTGGCCATCGATGACTGGTGGAGGAATGAGCAGTTTTG GGTCATTGGAGGTGTTTCTTCACATCTCTTCGCTGTATTCCAAGGACTTCTGAAAGTCCT TGCTGGTGTTGATACCAGCTTCACTGTGACATCAAAGGCCGGAGATGATGAAGAGTTCTC AGAGCTATACACGTTCAAATGGACCACCTTGTTGATACCTCCAACTACACTGCTGCTGTT GAACTTCATTGGGGTTGTAGCTGGAGTTTCTAATGCTATCAACAATGGATATGAATCATG GGGACCTCTGTTCGGGAAGCTCTTCTTTGCATTCTGGGTGATTGTCCATCTATATCCGTT CCTCAAGGGTTTGGTTGGAAGGCAAAACAGGACACCAACGATTGTTATCGTCTGGTCCAT TCTACTGGCTTCAATCTTCTCACTTCTATGGGTCCGGATCGATCCTTTCCTTGCGAAGAA TAATGGCCCTCTTCTGGAGGAATGTGGTCTGGATTGTAACTAAGCAGCCTACACTCCATA TATGCGGCGATACGAGCTTGAAGAAATTATTTTGCAGGCGGCGAATCAAGCCCAAGTTTT TAAATTCTTTCCTGTAGATAGAAATACAGATCTCCGGCATTTCTTTTGTTCCACAGTGGT AGGGCAGCTTCATCTGTGTGTATTAGGGCAAACCAGAAGCTATGTCAATTCTTGTGCAGT GCTACCAGAGAAGTCAAATCTACTCCTGTGGTTGATCCAAGATTATTTATTTATTTGGAG GGGATTTCCATCATCGCTGAGCTTACTTGGTGGAAGCTGCAGCATGTGTAAGCTAAGTTA CAAAGGCGTTGCCTTGCCATTTGGACAGAAGGAAGGAAGATGCCAATTGTTTATTTTAGT AAATTAAAATTGAATTGAATTATGC