Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0250900-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:8382164:8383056:-1 gene:Os07g0250900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os07t0250900-01)
Sequence

ATGTGCTGCTGCTGCTGCGAGTGCGGGTGCTACGAGTGCTACGACGCGTGCTGCGACCGC
TGCTGCTGCGGCTGCGTCTCCTACGACACCCGGGAGACCATCTTCTACTGCGCCGTCTGC
CTCCTCCTCGTCGCCGCCGTCGTCCTCCTCGCCGTCCTCCTCGCCGCCTACGGCTTCATC
CGCCACGTCTCCATCACCGTCGAGTCCGCGTCCCTCACGCGGTTCAACCTCTCCTCCCCG
TCGGAGGCCACCGCTCTCGCCTACAACCTCTCGCTCACGCTCGCCGTCCGCAACAAGAAC
TGGGCCATGAGCATCAAGAACACCAAGGACCTGGAGGCCGGGTACAGCTTCGACGGGCAG
CGGTTCGAGCGCGTCAAGCTCGCCGGCGAGGGGGAGAAGCACCCGGCGGGGAAGACGCGG
GTGTACCACCTCGACTCCAGCAGCGACAACGCATACGCGGCGCTCGGGAACGCCGGCGTC
GCCGAGTTCAAGAAGGAGAACGCGACGGGGGTGTTCGAGGTGGAGGTGGCGGTCACCGGC
GAGGTCAGGTACCAGGCGCACTACACCAAGTGCAAGCTCGCCGCGACGTGCCCGCTCAAG
CTGCAGCTCGCGCCGCCGGGCACGCCGGCGGTGGTGTTCCAGAAGGTCAAGTGCAAGCTC
GCCGCCGCCGACAAGAACTGCTAG

Peptide Sequence

PEP ID

Os07t0250900-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:8382164:8383056:-1 gene:Os07g0250900 transcript:Os07t0250900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os07t0250900-01)
Sequence

MCCCCCECGCYECYDACCDRCCCGCVSYDTRETIFYCAVCLLLVAAVVLLAVLLAAYGFI
RHVSITVESASLTRFNLSSPSEATALAYNLSLTLAVRNKNWAMSIKNTKDLEAGYSFDGQ
RFERVKLAGEGEKHPAGKTRVYHLDSSSDNAYAALGNAGVAEFKKENATGVFEVEVAVTG
EVRYQAHYTKCKLAATCPLKLQLAPPGTPAVVFQKVKCKLAAADKNC

Transcript Sequence

Transcript ID

Os07t0250900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:8382164:8383056:-1 gene:Os07g0250900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os07t0250900-01)
Sequence

ACTCCAAGATCCAAATCTCGCAGAGCTCAGCTCAGCCATGTGCTGCTGCTGCTGCGAGTG
CGGGTGCTACGAGTGCTACGACGCGTGCTGCGACCGCTGCTGCTGCGGCTGCGTCTCCTA
CGACACCCGGGAGACCATCTTCTACTGCGCCGTCTGCCTCCTCCTCGTCGCCGCCGTCGT
CCTCCTCGCCGTCCTCCTCGCCGCCTACGGCTTCATCCGCCACGTCTCCATCACCGTCGA
GTCCGCGTCCCTCACGCGGTTCAACCTCTCCTCCCCGTCGGAGGCCACCGCTCTCGCCTA
CAACCTCTCGCTCACGCTCGCCGTCCGCAACAAGAACTGGGCCATGAGCATCAAGAACAC
CAAGGACCTGGAGGCCGGGTACAGCTTCGACGGGCAGCGGTTCGAGCGCGTCAAGCTCGC
CGGCGAGGGGGAGAAGCACCCGGCGGGGAAGACGCGGGTGTACCACCTCGACTCCAGCAG
CGACAACGCATACGCGGCGCTCGGGAACGCCGGCGTCGCCGAGTTCAAGAAGGAGAACGC
GACGGGGGTGTTCGAGGTGGAGGTGGCGGTCACCGGCGAGGTCAGGTACCAGGCGCACTA
CACCAAGTGCAAGCTCGCCGCGACGTGCCCGCTCAAGCTGCAGCTCGCGCCGCCGGGCAC
GCCGGCGGTGGTGTTCCAGAAGGTCAAGTGCAAGCTCGCCGCCGCCGACAAGAACTGCTA
GCGCGTCGCCATGGCTGTGCCTAAGCTTTGCTAGTGATTATTTATGCGATTGGTTTGTTT
GTTCCTCTGGTTCAGTTTGTGATTCAATTCCTCTCGGGATTTGTGGTGGATTTGAAGGAA
TTGCACTATTGCGGTGTTTGATTCAATTCAATTCAATTCTCTGATGATTGTGG