Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0249100-02
CDS Infomation	cds chromosome:IRGSP-1.0:7:8281889:8286275:-1 gene:Os07g0249100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0249100-01);Pentatricopeptide repeat domain containing protein. (Os07t0249100-02)
Sequence	ATGGCGGCGGCGGCGCTGCGGACGCCGGCGACTCGCCGCCCGCTCCTCGCCCCCTTGAGC ATCCTACGTACGCCCACGCCTCGCCACCTCTCCTCTAGCTCCCCACCCTCTCAACCCCCG AGCTCCCCCGCCGGCGAGCTGCTCCGCCTCCTCTCCGCCGCCCCCACCTGGACCCCCGAC CTCGCCCGCGCCGTCTCCTCCACCTTCTCCGCCTCCCCCACCGCCGACGTCGTCATCTCC GTCCTCCGCTCCATCAGGAACCCATCCCTCGCCGCCCCGTTCTTCCTCCTCGCCTCCTCC TCCTCCGCCTCGGCCCCGCACCCCCTCCCCGCCGACGCCTACCACGCCGTCCTCCCGTTC CTCCACCACGACCTCGCCGCCCTCGAGAAGGTCCTCGAGGAGATGGCCGTCCTCGGGTAC GGCCTCCCCAACCAGGCCTGCGCCCACCTCGCCGCCGCGCTCGTCCGCGCCCGCCGCCTC GACGACGCCGTCCTCGCCGTCGCCGTCATGCGGCGGCTCAAGTTCCGCCCGGCGTTCTCG GCGTACACGGTGCTGATCGGCGCGCTGGCCGAGGCGCGGCGGCCCGAGCGCGCGCTGGAG CTGCTGAGACAGATGCAGGAGGTCGGGTACGAGGTCGGGGTGCATCTGTTCACCACGCTG GTGCGGGCGCTGGCGCGGGAGGGCCAAGTCGCCGACGCTCTTGCGCTGGTGGATGAGGTG AAGGGGAGCTGCCTGGAGCCGGACATTGTCTTGTACAACGTGTGCATCGACTGTTTCGGG AAGGCCGGCAATGTGGACATGGCATGGAAGTTCTTCCATGAGCTGAAGGCGCAGGGTCTG AAGCCGGATGATGTGTCGTACACGAGCATGATTTGGGTGCTCTGCAAGGCGGGAAGGTTA GGTGAGGCGGAGGAGCTGTTTGCGCAGATGGAGGCCGAAAGATCTGTGCCTTGCGCATAC GCGTATAACACTATGATCATGGGATATGGATCTGCTGGGCGGTTTGAGGATGCATATAAG TTGCTTGAAAGGTTGAGGGAGAGAGGTTGTATTCCATCTGTTGTGTCATTTAATTCGATT CTCACTTGCCTTGGTAAGAAGAGGAAGGTTGATGAGGCTCTAAGCTTGTTTGAGGTCATG AAGAAGGATGCAGAGCCGAATTCCTCAACATATAACATCATCATAGATATGCTTTGCTTG GGTGGGAGGGTTGAGGAGGCGTATAGGATACTTGATGAGATGGAGCATGCTAGTTTGTTT CCGAACTTGTTGACTGTGAATATAATGGTGGATAGGCTGTGCAAGGCAAGGAAGCTTGAG GAGGCCTATAAGATATTTGAAAGCGCAAGCCAGAGAGGTTGCAATCCTGATTGTGTGACA TACTGTTCACTTATTGATGGTTTAGGAAAGAAAGGGCAGGTTGACGAGGCCTATAGGCTA TTTGAGAAAATGCTGGATGCAGGGCACAATGCTAATCCTGTTGTATACACCTCCTTGATT AGGAATTTCTTCATTCATGGAAGGAAAGAAGATGGGCACAAAATCTTCAAAGAGTTGATC CGTCGAGGGTGCAAGCCTGATCTAACCCTTCTCAATACTTATATGGATTGTGTTTTCAAG GCAGGTGAGGTTGAAAAGGGAAGAATGATTTTTGAGGACATCAGGAGTTATGGGTTTCTT CCTGATGTCCGAAGTTATTCCATTCTGATTCATGGTCTCACAAAAGCTGGCCAGGCTAGA GAAACATCAAACATTTTTCATGCCATGAAGCAGCAAGGTTTTGCTCTTGATGCTCGTGCT TATAATGCTGTTGTCGATGGGTTTTGCAAATCTGGGAAGGTGCACAAAGCCTATGAAATT CTTGAGGAGATGAAGGAAAAATGTGTACAACCTACAGTTGCTACATATGGAGCAATTGTT GATGGTCTTGCAAAGATTGATAGGTTGGACGAGGCTTACATGCTTTTTGAGGAAGCAAAG TCGAAAGGTATAGAATTGAATGTTGTTCTGTACAGCTCTCTCATAGATGGCTTTGGGAAG GTTGGTAGGATAGATGAAGCTTATTTAATTTTAGAAGAAATGATGAAGAAGGGTTTGACT CCAAATGTGTACACATGGAATAGCCTCTTGGATGCTTTAGTGAAAGCTGAAGAAATAAAT GAGGCGCTTGTCTGTTTCCAGTCAATGAAGGAAATGAAATGCCCACCAAACACTTATACA TACAGCATTCTTATAAACGGCCTTTGCCGTGTACAGAAGTACAATAAAGCTTTTGTGTTC TGGCAAGATATGCAGAAACAGGGCTTGGTCCCTAATGTGGTCACTTACACAACCATGATC TCGGGGCTTGCAAAGGTAGGAAACATAACGGATGCTTACAGCCTCTTTGAGAGGTTTAAG GCCAATGGTGGAATTCCTGACGCTGCAAGTTTCAATGCTCTTATAGAGGGAATGAGCAAT GCAAATAGAGCGATGGAGGCATATCAGGTATTTGAAGAAACTCGTTTGCGGGGCTGCAGA ATTAATATAAAGTCATGCATTAGTCTTTTAGATGCTTTAAACAAATCTGAATGTCTAGAG CAAGCTGCTATTGTAGGTGCAGTTTTGAGGGAGATTGCCAAGTCCCAACATGCTTCGAGA TCCTTGTAG

Peptide Sequence

PEP ID	Os07t0249100-02
PEP Infomation	pep chromosome:IRGSP-1.0:7:8281889:8286275:-1 gene:Os07g0249100 transcript:Os07t0249100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0249100-01);Pentatricopeptide repeat domain containing protein. (Os07t0249100-02)
Sequence	MAAAALRTPATRRPLLAPLSILRTPTPRHLSSSSPPSQPPSSPAGELLRLLSAAPTWTPD LARAVSSTFSASPTADVVISVLRSIRNPSLAAPFFLLASSSSASAPHPLPADAYHAVLPF LHHDLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFS AYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEV KGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRL GEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSI LTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLF PNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRL FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFK AGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARA YNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK SKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI SGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCR INIKSCISLLDALNKSECLEQAAIVGAVLREIAKSQHASRSL

Transcript Sequence

Transcript ID	Os07t0249100-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:8281889:8286275:-1 gene:Os07g0249100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0249100-01);Pentatricopeptide repeat domain containing protein. (Os07t0249100-02)
Sequence	TTTTTCCCCACTACCCAAACCCGGCTAGGGTTTTACCACACTCTCTCCCCATGGCGGCGG CGGCGCTGCGGACGCCGGCGACTCGCCGCCCGCTCCTCGCCCCCTTGAGCATCCTACGTA CGCCCACGCCTCGCCACCTCTCCTCTAGCTCCCCACCCTCTCAACCCCCGAGCTCCCCCG CCGGCGAGCTGCTCCGCCTCCTCTCCGCCGCCCCCACCTGGACCCCCGACCTCGCCCGCG CCGTCTCCTCCACCTTCTCCGCCTCCCCCACCGCCGACGTCGTCATCTCCGTCCTCCGCT CCATCAGGAACCCATCCCTCGCCGCCCCGTTCTTCCTCCTCGCCTCCTCCTCCTCCGCCT CGGCCCCGCACCCCCTCCCCGCCGACGCCTACCACGCCGTCCTCCCGTTCCTCCACCACG ACCTCGCCGCCCTCGAGAAGGTCCTCGAGGAGATGGCCGTCCTCGGGTACGGCCTCCCCA ACCAGGCCTGCGCCCACCTCGCCGCCGCGCTCGTCCGCGCCCGCCGCCTCGACGACGCCG TCCTCGCCGTCGCCGTCATGCGGCGGCTCAAGTTCCGCCCGGCGTTCTCGGCGTACACGG TGCTGATCGGCGCGCTGGCCGAGGCGCGGCGGCCCGAGCGCGCGCTGGAGCTGCTGAGAC AGATGCAGGAGGTCGGGTACGAGGTCGGGGTGCATCTGTTCACCACGCTGGTGCGGGCGC TGGCGCGGGAGGGCCAAGTCGCCGACGCTCTTGCGCTGGTGGATGAGGTGAAGGGGAGCT GCCTGGAGCCGGACATTGTCTTGTACAACGTGTGCATCGACTGTTTCGGGAAGGCCGGCA ATGTGGACATGGCATGGAAGTTCTTCCATGAGCTGAAGGCGCAGGGTCTGAAGCCGGATG ATGTGTCGTACACGAGCATGATTTGGGTGCTCTGCAAGGCGGGAAGGTTAGGTGAGGCGG AGGAGCTGTTTGCGCAGATGGAGGCCGAAAGATCTGTGCCTTGCGCATACGCGTATAACA CTATGATCATGGGATATGGATCTGCTGGGCGGTTTGAGGATGCATATAAGTTGCTTGAAA GGTTGAGGGAGAGAGGTTGTATTCCATCTGTTGTGTCATTTAATTCGATTCTCACTTGCC TTGGTAAGAAGAGGAAGGTTGATGAGGCTCTAAGCTTGTTTGAGGTCATGAAGAAGGATG CAGAGCCGAATTCCTCAACATATAACATCATCATAGATATGCTTTGCTTGGGTGGGAGGG TTGAGGAGGCGTATAGGATACTTGATGAGATGGAGCATGCTAGTTTGTTTCCGAACTTGT TGACTGTGAATATAATGGTGGATAGGCTGTGCAAGGCAAGGAAGCTTGAGGAGGCCTATA AGATATTTGAAAGCGCAAGCCAGAGAGGTTGCAATCCTGATTGTGTGACATACTGTTCAC TTATTGATGGTTTAGGAAAGAAAGGGCAGGTTGACGAGGCCTATAGGCTATTTGAGAAAA TGCTGGATGCAGGGCACAATGCTAATCCTGTTGTATACACCTCCTTGATTAGGAATTTCT TCATTCATGGAAGGAAAGAAGATGGGCACAAAATCTTCAAAGAGTTGATCCGTCGAGGGT GCAAGCCTGATCTAACCCTTCTCAATACTTATATGGATTGTGTTTTCAAGGCAGGTGAGG TTGAAAAGGGAAGAATGATTTTTGAGGACATCAGGAGTTATGGGTTTCTTCCTGATGTCC GAAGTTATTCCATTCTGATTCATGGTCTCACAAAAGCTGGCCAGGCTAGAGAAACATCAA ACATTTTTCATGCCATGAAGCAGCAAGGTTTTGCTCTTGATGCTCGTGCTTATAATGCTG TTGTCGATGGGTTTTGCAAATCTGGGAAGGTGCACAAAGCCTATGAAATTCTTGAGGAGA TGAAGGAAAAATGTGTACAACCTACAGTTGCTACATATGGAGCAATTGTTGATGGTCTTG CAAAGATTGATAGGTTGGACGAGGCTTACATGCTTTTTGAGGAAGCAAAGTCGAAAGGTA TAGAATTGAATGTTGTTCTGTACAGCTCTCTCATAGATGGCTTTGGGAAGGTTGGTAGGA TAGATGAAGCTTATTTAATTTTAGAAGAAATGATGAAGAAGGGTTTGACTCCAAATGTGT ACACATGGAATAGCCTCTTGGATGCTTTAGTGAAAGCTGAAGAAATAAATGAGGCGCTTG TCTGTTTCCAGTCAATGAAGGAAATGAAATGCCCACCAAACACTTATACATACAGCATTC TTATAAACGGCCTTTGCCGTGTACAGAAGTACAATAAAGCTTTTGTGTTCTGGCAAGATA TGCAGAAACAGGGCTTGGTCCCTAATGTGGTCACTTACACAACCATGATCTCGGGGCTTG CAAAGGTAGGAAACATAACGGATGCTTACAGCCTCTTTGAGAGGTTTAAGGCCAATGGTG GAATTCCTGACGCTGCAAGTTTCAATGCTCTTATAGAGGGAATGAGCAATGCAAATAGAG CGATGGAGGCATATCAGGTATTTGAAGAAACTCGTTTGCGGGGCTGCAGAATTAATATAA AGTCATGCATTAGTCTTTTAGATGCTTTAAACAAATCTGAATGTCTAGAGCAAGCTGCTA TTGTAGGTGCAGTTTTGAGGGAGATTGCCAAGTCCCAACATGCTTCGAGATCCTTGTAGT ATTGAGGGTACTTGAGTTTTTCTTTAGGGTGTGCCTCGGAGAAACAGGTCTTTGATTTGA TCGATCCTGTTTCAGTGATTGCAATTCCATGCTTGACTGCTGTTCTGCTGTTTGGAAAGA GAACATTGTTCTGCGTTTTCGTTGATGTTGATAAGGATCGAATTCTCAGAACTTAAAGAT GACAAGAATTATGATTTCGTTCAAATCTGCTCCATTACTGTTGGATAGCATCAAAACTGT CAACTGCATGATTAGTGCATATAAATGAACTTATGGACAAAGAATTCATAGTTCAGTGTG CTTGACTTGCAAGTTGGACCAAGCTCCTCTGCAGACCACGGTTTATCAGGCGGGTTGGCT TGATACGACGATGAGGCTGGACTGCTTGATATTCTCCTGAACTTCCATTTTATTATTGGA TTAGGCCACCTGTGGATCTTTCAATGGAATTAAAATGGTAGCCTGGCTACGCATGGTAAA CCAGAGCTCCTGCTCGAGTTCTCCCCTGTTTGGTCGATTTGGATCAAATTTGTCCTTCAA TAGGTTCCTTTTAAGAGATTTCCCTTCCACAAGGGTATGTGTATACTTTTTGTTGTGTAT ATTGCAGATACCAATATATTTCAAATTTCACGAGAGAATGTGGAATATACAGGAGGAAAC AAATAATAATGGGTTTTAATCCATAGTCATGTTATTCATTTTTTTTTCACCCTTGTACTT CTGATAAAAAGTTCTTGTACTTATGATAAAAAGTTGTGTATGTGGTGAGAATTTTGGTAT AAGAAAATAAAAGATAAGCACTCTTCTACTTCTGATCTG