Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0239600-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:7753947:7757879:-1 gene:Os07g0239600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0239600-01)
Sequence	ATGTGCGCGGCGAGGAAAGCTGCGGCTCGGCTGCTCTCGCCGCGGGCTTCCACGCATCCC TTCTCTGCGGCCCTCCTCCTGCGGGGACGAGCCGCCCGCGGGGGATCCCTCGAGGCACGC TTGGCTACGGTGCCCCACGAGCGTGCCTCGGTTTTGCGGTTCTGGGTCAGACGCCGCAGA TTCCACGACGCCCGCGGGGTGTTCGACGAAAGGCCCACGAGGACCGCGCCCGTGTGGACG TTGACGATCTCGGGCTGCGCACGGCGCGGCCGGTATGCGGACGGAATGCGCGCGTTCGCG GAGATGCTGGCCGAAGGTGAAGCCACGCCGAACGCGTTCGTCCTTGCTGCCGTCGTCAGG TGCTGCGCCGGTATGGGCGATGTGGAGTCCGGCAAGCGCGTCCACGGGTGGATGCTGAGG AACGGGGTGCATCTGGACGTGGTGCTGTGCAATGCTGTTCTTGACATGTACGCCAAGTGT GGCCAGTTCGAGCGTGCCAGGCGGGTGTTCGGAGCAATGGCCGAGAGAGACGCCGTCTCC TGGAACATTGCCATCGGTGCATGCATACAGTCCGGTGATATCCTTGGGTCGATGCAGCTT TTTGATGAATCGCCGCTGCGTGACACTACAAGCTGGAACACAATCATCAGCGGCCTGATG CGGAGTGGGCATGCTGCGGACGCCCTGAGCCACCTGCGTCGAATGGCGCAAGCTGGAGTG GTGTTCAATCACTACACTTACTCCACAGCGTTTGTCTTGGCCGGCATGCTTCTCTTGCCA GACCTAGGCCGGCAGCTCCATGGCCGTGTTTTGATTGCTGCACTGGAGGGTGATGCATTT GTTCGGAGCTCTCTCATGGACATGTACTGCAAATGCGGCTTATTGGAGGCAGCTGCGTCA GTCTTTGATCATTGGTCACCACTCACTAGAGACATGAACTTTGCCTGGAGCACAATGGTT GCTGGGTATGTCCAGAATGGCAGGGAGGAAGAAGCTCTTGATCTCTTTCGAAGGATGCTG CGCGAAGGGGTTGCTGCTGATCGGTTTACCCTCACTAGTGTAGCCGCAGCTTGTGCAAAT GTTGGGATGGTTGAGCAAGGAAGGCAAGTGCATGGCTGCGTGGAGAAGCTATGGTACAAA TTGGATGCACCATTGGCATCTGCCATTGTGGACATGTATGCTAAGTGTGGCAACCTTGAA GATGCTCGTAGCATATTCGACAGAGCTTGCACCAAAAACATTGCTGTCTGGACTTCAATG CTGTGCTCCTATGCATCTCATGGCCAAGGCAGGATAGCTATTGAGCTCTTCGAAAGAATG ACAGCAGAAAAAATGACTCCTAACGAGATTACCCTTGTCGGTGTTCTATCTGCCTGTAGC CACGTTGGATTGGTCAGTGAAGGAGAGCTTTACTTTAAGCAGATGCAAGAGGAGTATGGA ATTGTTCCAAGCATTGAGCACTACAATTGCATTGTTGATCTTTACGGGCGATCTGGACTG CTTGACAAAGCAAAGAACTTCATTGAGGAAAACAACATCAACCATGAGGCTATTGTTTGG AAGACGCTACTGTCAGCTTGTCGACTTCACCAGCACAACGAATATGCAAAATTGGCTTCT GAAAAATTGGTTCAACTGGAGCAATGCGATGCTGGATCATATGTTATGCTGTCAAACATA TATGCAACCAACAACAAATGGCACGACACTTTTGAGCTTAGAGTTTCAATGCAGGAAAGG AAGGTCAGGAAGCAGCCTGGTCGATCTTGGATCCACCTGAAGAATACTGTGCATACATTT GTTGCAGGGGATGCGTCACACCCACAATCAGCTGAAATTTATGCTTACTTGGAGAAGCTG GTGGAGAGACTGAAGGAGATTGGGTACACAAGTAGAACTGATCTTGTTGTTCATGATGTA GAGGATGAACAAAGGGAAACAGCTCTTAAGTTCCACAGTGAGAAGCTGGCCATTGCATTT GGGATCATCAGCACTCCAAGTGGGACTCCACTTAGGATCTTCAAGAATCTGCGTGTTTGT GAGGATTGCCATGAAGCGATCAAGTACATAAGTCTGGCCACAGGTAGGGAAATAGTTGTT CGTGACTTGTATCGGTTTCATCATTTCAAGGATGCTAGTTGTTCTTGTGAGGATTTCTGG TGA

Peptide Sequence

PEP ID	Os07t0239600-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:7753947:7757879:-1 gene:Os07g0239600 transcript:Os07t0239600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0239600-01)
Sequence	MCAARKAAARLLSPRASTHPFSAALLLRGRAARGGSLEARLATVPHERASVLRFWVRRRR FHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVR CCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVS WNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGV VFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAAS VFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACAN VGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSM LCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYG IVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLAS EKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTF VAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAF GIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW

Transcript Sequence

Transcript ID	Os07t0239600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:7753947:7757879:-1 gene:Os07g0239600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0239600-01)
Sequence	AGCTTCTTCGCTTCGCTCCTCTTCCTCCTCGCGATAGCCGCCGCGGCGGCGGCCGCTCGC ATCCGCCTCGTCGCGCGCGCTCCAGCGCCGCCATCATCGCCTCCATGCGCGCGGCCTTGA TCGCATCGTTCCCTCGCCTCCACGGCTCCACCGGCGGCCAGCGAGCTCGTGATGTGCGCG GCGAGGAAAGCTGCGGCTCGGCTGCTCTCGCCGCGGGCTTCCACGCATCCCTTCTCTGCG GCCCTCCTCCTGCGGGGACGAGCCGCCCGCGGGGGATCCCTCGAGGCACGCTTGGCTACG GTGCCCCACGAGCGTGCCTCGGTTTTGCGGTTCTGGGTCAGACGCCGCAGATTCCACGAC GCCCGCGGGGTGTTCGACGAAAGGCCCACGAGGACCGCGCCCGTGTGGACGTTGACGATC TCGGGCTGCGCACGGCGCGGCCGGTATGCGGACGGAATGCGCGCGTTCGCGGAGATGCTG GCCGAAGGTGAAGCCACGCCGAACGCGTTCGTCCTTGCTGCCGTCGTCAGGTGCTGCGCC GGTATGGGCGATGTGGAGTCCGGCAAGCGCGTCCACGGGTGGATGCTGAGGAACGGGGTG CATCTGGACGTGGTGCTGTGCAATGCTGTTCTTGACATGTACGCCAAGTGTGGCCAGTTC GAGCGTGCCAGGCGGGTGTTCGGAGCAATGGCCGAGAGAGACGCCGTCTCCTGGAACATT GCCATCGGTGCATGCATACAGTCCGGTGATATCCTTGGGTCGATGCAGCTTTTTGATGAA TCGCCGCTGCGTGACACTACAAGCTGGAACACAATCATCAGCGGCCTGATGCGGAGTGGG CATGCTGCGGACGCCCTGAGCCACCTGCGTCGAATGGCGCAAGCTGGAGTGGTGTTCAAT CACTACACTTACTCCACAGCGTTTGTCTTGGCCGGCATGCTTCTCTTGCCAGACCTAGGC CGGCAGCTCCATGGCCGTGTTTTGATTGCTGCACTGGAGGGTGATGCATTTGTTCGGAGC TCTCTCATGGACATGTACTGCAAATGCGGCTTATTGGAGGCAGCTGCGTCAGTCTTTGAT CATTGGTCACCACTCACTAGAGACATGAACTTTGCCTGGAGCACAATGGTTGCTGGGTAT GTCCAGAATGGCAGGGAGGAAGAAGCTCTTGATCTCTTTCGAAGGATGCTGCGCGAAGGG GTTGCTGCTGATCGGTTTACCCTCACTAGTGTAGCCGCAGCTTGTGCAAATGTTGGGATG GTTGAGCAAGGAAGGCAAGTGCATGGCTGCGTGGAGAAGCTATGGTACAAATTGGATGCA CCATTGGCATCTGCCATTGTGGACATGTATGCTAAGTGTGGCAACCTTGAAGATGCTCGT AGCATATTCGACAGAGCTTGCACCAAAAACATTGCTGTCTGGACTTCAATGCTGTGCTCC TATGCATCTCATGGCCAAGGCAGGATAGCTATTGAGCTCTTCGAAAGAATGACAGCAGAA AAAATGACTCCTAACGAGATTACCCTTGTCGGTGTTCTATCTGCCTGTAGCCACGTTGGA TTGGTCAGTGAAGGAGAGCTTTACTTTAAGCAGATGCAAGAGGAGTATGGAATTGTTCCA AGCATTGAGCACTACAATTGCATTGTTGATCTTTACGGGCGATCTGGACTGCTTGACAAA GCAAAGAACTTCATTGAGGAAAACAACATCAACCATGAGGCTATTGTTTGGAAGACGCTA CTGTCAGCTTGTCGACTTCACCAGCACAACGAATATGCAAAATTGGCTTCTGAAAAATTG GTTCAACTGGAGCAATGCGATGCTGGATCATATGTTATGCTGTCAAACATATATGCAACC AACAACAAATGGCACGACACTTTTGAGCTTAGAGTTTCAATGCAGGAAAGGAAGGTCAGG AAGCAGCCTGGTCGATCTTGGATCCACCTGAAGAATACTGTGCATACATTTGTTGCAGGG GATGCGTCACACCCACAATCAGCTGAAATTTATGCTTACTTGGAGAAGCTGGTGGAGAGA CTGAAGGAGATTGGGTACACAAGTAGAACTGATCTTGTTGTTCATGATGTAGAGGATGAA CAAAGGGAAACAGCTCTTAAGTTCCACAGTGAGAAGCTGGCCATTGCATTTGGGATCATC AGCACTCCAAGTGGGACTCCACTTAGGATCTTCAAGAATCTGCGTGTTTGTGAGGATTGC CATGAAGCGATCAAGTACATAAGTCTGGCCACAGGTAGGGAAATAGTTGTTCGTGACTTG TATCGGTTTCATCATTTCAAGGATGCTAGTTGTTCTTGTGAGGATTTCTGGTGAAATTTT GTTGACCATTCATGATGACTAACTGAGTAACTGAAGATTGTTATGTACTGCGTCGTGCAC GTGCATGGCTGTACTAGAGATTGTGGCTCAAATGTATATTGATTTAAGGAGAATTCCTTA TTAGCCATCTGATGCCAAGTATATTCCTCATCTGCGGAGAAGCGCATTAACAGGCTACCT CACCTTGATGAGCCAGACATCCTCACCTCCACCTACGAACCATTATCATCGGCAGTCGGC ATGGACTACTCGCCATTTAGCAAGGCTGTGGTGAGGCAGGCGGTGGATAACCTGGTGAAG GCCAGCAACTGGATCATCCTGATCCATGTCCTTCCCAGAGGAGCAGATGCCAGCCACAAG GAGCTCTGGAAGAGCACCGGCTCACACATGCAGAGGCATTGCAATTTTTCTGCTGCTTCT CTTGTTCAGCAAATTCTGACTGCTGCTTCTCTTGTTCAACAAATTCTGACGCAGAAAGCT TAACAGGGAGGTGTTGGGTCAACCCTGATAAGGAGGTACTAGCGATCCTGCAAGCTGAAT CGAAGTCCAAGCAGGTAATGACTCAGCTTTGCCAGAAGATCACCCACCTTTGTATTTGGG TGGTTTGTGAGGAATTCTGCATAGGGGACAGGCGAATTATGCTTGATGGTTCTATAGTTG TAACAATCTGCAACTGCCTGGGCGTCTGTACAGACTATGCTTGAGGTTCACCATTCCATT TCCCATGCTGGCATTCTCATTTTTCTTGGTTAGGACAAGAGCTTCTTGACATTCATTGAC AAGTGTATTGAAGGTTCTTATTTTGTAATGTCATAGTAAATTCCTTGTTTGGGGTCATGT CTGCAGTTTGCAAGGAGTCCAGGGAAGGTTCACACTTGAACCCAAGCAGTGGGCTGTTCC AACCAAATGAGAAGAAGGATGTGGTAACATCAACTGGCTAGCAATGGTTGGGATTCTCGC TGGTTACCTTTGTGATGGGGCCTCTTAAGATGTTAAAGCTCTATGCTGTTCCTTACATGA TATTGTCATGTGGTTGGATTTTGTCACATACTTGCACCATCATGGCCATGAAGAAGCTTC CCTGGCACCATGGAAGAGTAAATAACATTATTAATGTTGTGGGATTGCTATTTGTCAATG ATGCAAGGATGGCCACTAGGGTATAGTCCATTTTTGTTCAACATAGGGCATAGTCTAGTT TTGTTCAACATAGGGCATAGTCCATTTTTGTTTGCTAAATGGCAGAAGGTTTATTTGTTC AAACATAGGTTCTGCGTGTAAAAATTATTGAGTAGAGATTTATGCCTTTAAAGATAATTA GCTGAATTTCCCGTGCAACTAAACTAAATGATTATGTGAAAGTAGAATTGTATTTGACAT ACAACTCTTGCATCTATATATGTAAATACAAACC