Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0213300-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:6222175:6231669:-1 gene:Os07g0213300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0213300-01);Similar to cDNA clone:J013123O09, full insert sequence. (Os07t0213300-02)
Sequence	ATGAAAAATCAGGATAACTACTGTGCTCGTAACGACATTTATGGCATGATGATACGACTA TATGCGAGGCATAACCAGGTTGATCAGGCACGTGGCCTGTTCTTTGAGATGCAGGAATGG CGGTGTAAACCTGATGCTGATATATACAATTCCCTCATCCATGCTCATTCTCGAGCTGGT CAATGGCGTTGGGCCATCAACATTATGGAAGATATGCTTCGTGCTGCTATACCTCCTACC CGGACTACGTATAATAATGTGATAAATGCATGTGGGGCTGCTGGCAACTGGAAAAAAGCT TTAGAACTGTGTAAGAAAATGACAGAAAATGGTGTGGGACCAGATTTGGTTACACACAAC ATTGTCTTGTCTGCTCTCAAGAATGGAGCTCAGTACTCAAAAGCAATATCTTATTTTGAA ATAATGAAAGGAGCAAATGTCACCTCTGATACTTTCACGTTAAATATTATCATCCATTGC CTTGTAAAGATTGGACAGTGTGGGGAAGCTATTGAATTGTTTAACTCAATGAGGGAGAGA AGAACCAAATGTCCTCCAGATGTTGTTACATATACTAGCATCATGCATTCTTATTGTATT TATGGGCAAGTTGAAAATTGCAAAGCAATCTTTGATTTGATGGTTGCTGAAGGAGTGAAG CCTAATATTGTAGCATATAATTCGCTTTTGGGTGCATATGCCTCACGAGGTATGCATAGA GAGGCCTTGGCAATTTTTAATTTAATAAAGAAAAATGGGTTACGACCTGATATAGTTTCG TATACCTCCTTACTGAATGCATATGGTAGATCTGCACAGCCTGAGAAGGCTAGGGAGGTC TTTAACAAGATGAAGAAGAACTCATGCAAACCAAATAAAGTCAGTTACAATGCACTTATT GATGCCTATGGGTCTGCGGGAATGTTGAAGGAAGCTGTTGGCTTGCTGCATGAAATGGAG AAAGATGGCATTCAGCCAGATGTTGTTTCCATAAGTACTCTGTTGGCTGCCTGCGGTCGC TGCAGGCAGATAACAAGAATTGAGACAATTCTTGAAGCAGCTAGGTCCCGAGGTATTGAT CTAAATACAGTTGCTTACAACTCCGGCATTAAAAGTTATTTAAGTTTTGGAGATTATGAG AAAGCTTTGGAGTTGTATACATCAATGAGGGAGAGCAATGTGAAACCAGATGCTGTAACC TACAATATACTCATCAGTGGATCTAGTAAATTAGGAAAGTATACGGAATCTTTGAGATTT TTTGAGGACATGGTGGACTCCAAGGTTTCTTCAACCAAGGAGGTTTACTCTTCATTGATT TATTCGTATATCAAACAGGGCAAACTATCTGAAGCAGAATCTACTTTCAGTTCTATGAAA AAATCAGGCTGTTTTCCTGATGTTTTGACATATACTACATTGATCCAAGCCTATAATGCT GGTGGTGGTTGGAAGAGAGCTTGGGACCTGTTCAAAGAGATGGAAGTAAATGGTATTCCA CCAGATGCCATTATATGCTCATCTCTCATGGAAGCATTCAATAAGGGTGGCGAACCTGAA AGAGTCCTTCAATTGATGGAATTCATGAAGAAAAAATCCATCCCGTTGAACCAAAAATCT TATTTTGAGATAATAGCTTCATGCACCATGATACGTGACTGGAAAACAGCAAGTGAGATG ATTGAATATTTGGATTCTTCGCTCTCATCCATTTCTGTTGGAACACTAAACCATGTTTTA AATTTTCTTGGAAAATGTGGGAAGACAGAGAACATGATGAAGCTGTTTTACAAGATGGTG ACTTCATGTTCTACTGTGGGTCTTTCTACTTATGCGGTTGTTCTTAGAAATCTCCTAGTT GTTGGGAAATGGAGAAAGTATATTGAGGTTTTGCAGTGGATGGAGGACTCTGGAGTTCAT CCAACACTATATATGTTTCAAAATGTCCTTCCCTATATCTGGAGAGAAAATGGCATGGAT TTTGCTGCTACTATGCAAGAAAAAATAAGTTCATTGAGAGACAAGCAAACGTGA

Peptide Sequence

PEP ID	Os07t0213300-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:6222175:6231669:-1 gene:Os07g0213300 transcript:Os07t0213300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0213300-01);Similar to cDNA clone:J013123O09, full insert sequence. (Os07t0213300-02)
Sequence	MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAG QWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHN IVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRER RTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHR EALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALI DAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGID LNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRF FEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNA GGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKS YFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMV TSCSTVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYMFQNVLPYIWRENGMD FAATMQEKISSLRDKQT

Transcript Sequence

Transcript ID	Os07t0213300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:6222175:6231669:-1 gene:Os07g0213300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0213300-01);Similar to cDNA clone:J013123O09, full insert sequence. (Os07t0213300-02)
Sequence	GCTCTCACACCGCCCCAACGGTAAAGCTTCTCTCCCCCCCTCCACCACCCGCCGCGATGT CTTCCGCTCCGCCGCCGCCGCGGTCGCCGGCTGCGACGCCCGACGCGGCGGCGCCAGCGT CACCGGCCCGGACGCGCGTGGTCCGCGCGCCCCCACGGCCGCCGCGGCCGCGGCTGGCGC ACCCGGGCGCCGCGCCGCCGGGGTGGGCGGAGCGCCGCCCCGCCGTGTCCGTGGACTACG ACCGGGGCCGGCGCGAGGCCCGCGCCGAGGTGGAGGGCGTGGGCGCCGCTTCGCTCCCCG CGCGCCACCGCCTGCGCGTGGAGGGGAGCCGGTGGCAGCGGGACTGGAAGGTGTCGGAGG CCGCCGCGCGCGTGCTCGCGCTCCCGCGCGCCGAGGCCCGCGCCGTCGACGCCGTGCTCA ACTGCTGGGCCGGCCGCTTCGCCCGCCGCAACTTCCCTCTCCTCATCCGCGTAAGGCCAT CATCCCCACGCTCTGTAGCATTTCATGAATTGAAAATTGCTGATGATATACATCAATGTG GCTGCCATGGTTGCCTTGCGTGGAGGCACTAATGACAAACTGGTTTTGGGGCCAAAATGT TATCGATTGCTTGAAATTACAAAAATCATGAACAATTCAATCGATCTAGCTGTGTTGTTA TGGTAGTACCAGCTGCACATGCAAATTTTGTAGACGAGGCTCAAATCTCTCGATTTGCTA ACATAAAACTAGCCTTTTCAGGTAATAACGCGCTTACACATGTTGTATCACTTGTAGGAG ATCACAATTTCTGGGAATTTACAGCATGCTGTCCATGTGTTCTGCTGGATGAAAAATCAG GATAACTACTGTGCTCGTAACGACATTTATGGCATGATGATACGACTATATGCGAGGCAT AACCAGGTTGATCAGGCACGTGGCCTGTTCTTTGAGATGCAGGAATGGCGGTGTAAACCT GATGCTGATATATACAATTCCCTCATCCATGCTCATTCTCGAGCTGGTCAATGGCGTTGG GCCATCAACATTATGGAAGATATGCTTCGTGCTGCTATACCTCCTACCCGGACTACGTAT AATAATGTGATAAATGCATGTGGGGCTGCTGGCAACTGGAAAAAAGCTTTAGAACTGTGT AAGAAAATGACAGAAAATGGTGTGGGACCAGATTTGGTTACACACAACATTGTCTTGTCT GCTCTCAAGAATGGAGCTCAGTACTCAAAAGCAATATCTTATTTTGAAATAATGAAAGGA GCAAATGTCACCTCTGATACTTTCACGTTAAATATTATCATCCATTGCCTTGTAAAGATT GGACAGTGTGGGGAAGCTATTGAATTGTTTAACTCAATGAGGGAGAGAAGAACCAAATGT CCTCCAGATGTTGTTACATATACTAGCATCATGCATTCTTATTGTATTTATGGGCAAGTT GAAAATTGCAAAGCAATCTTTGATTTGATGGTTGCTGAAGGAGTGAAGCCTAATATTGTA GCATATAATTCGCTTTTGGGTGCATATGCCTCACGAGGTATGCATAGAGAGGCCTTGGCA ATTTTTAATTTAATAAAGAAAAATGGGTTACGACCTGATATAGTTTCGTATACCTCCTTA CTGAATGCATATGGTAGATCTGCACAGCCTGAGAAGGCTAGGGAGGTCTTTAACAAGATG AAGAAGAACTCATGCAAACCAAATAAAGTCAGTTACAATGCACTTATTGATGCCTATGGG TCTGCGGGAATGTTGAAGGAAGCTGTTGGCTTGCTGCATGAAATGGAGAAAGATGGCATT CAGCCAGATGTTGTTTCCATAAGTACTCTGTTGGCTGCCTGCGGTCGCTGCAGGCAGATA ACAAGAATTGAGACAATTCTTGAAGCAGCTAGGTCCCGAGGTATTGATCTAAATACAGTT GCTTACAACTCCGGCATTAAAAGTTATTTAAGTTTTGGAGATTATGAGAAAGCTTTGGAG TTGTATACATCAATGAGGGAGAGCAATGTGAAACCAGATGCTGTAACCTACAATATACTC ATCAGTGGATCTAGTAAATTAGGAAAGTATACGGAATCTTTGAGATTTTTTGAGGACATG GTGGACTCCAAGGTTTCTTCAACCAAGGAGGTTTACTCTTCATTGATTTATTCGTATATC AAACAGGGCAAACTATCTGAAGCAGAATCTACTTTCAGTTCTATGAAAAAATCAGGCTGT TTTCCTGATGTTTTGACATATACTACATTGATCCAAGCCTATAATGCTGGTGGTGGTTGG AAGAGAGCTTGGGACCTGTTCAAAGAGATGGAAGTAAATGGTATTCCACCAGATGCCATT ATATGCTCATCTCTCATGGAAGCATTCAATAAGGGTGGCGAACCTGAAAGAGTCCTTCAA TTGATGGAATTCATGAAGAAAAAATCCATCCCGTTGAACCAAAAATCTTATTTTGAGATA ATAGCTTCATGCACCATGATACGTGACTGGAAAACAGCAAGTGAGATGATTGAATATTTG GATTCTTCGCTCTCATCCATTTCTGTTGGAACACTAAACCATGTTTTAAATTTTCTTGGA AAATGTGGGAAGACAGAGAACATGATGAAGCTGTTTTACAAGATGGTGACTTCATGTTCT ACTGTGGGTCTTTCTACTTATGCGGTTGTTCTTAGAAATCTCCTAGTTGTTGGGAAATGG AGAAAGTATATTGAGGTTTTGCAGTGGATGGAGGACTCTGGAGTTCATCCAACACTATAT ATGTTTCAAAATGTCCTTCCCTATATCTGGAGAGAAAATGGCATGGATTTTGCTGCTACT ATGCAAGAAAAAATAAGTTCATTGAGAGACAAGCAAACGTGAGCTCTCGATGTTTACATC TCTCTGATGTTAAGCAGGAAATACCTCGGCTTTAAACACAGGTCTTCCAACACAGAAACG CCTGCCTCCTTCAGTGGTAACACATATGTGCTGACAAAAAGAAATTTATGATGAGCTACC ACCATCATGAGTGAAGAACAGAGTATGTCGTTAAGTTTGTCTAATACAGGATGGGGGCAT AAATCATCATTGCGTTCCTCAGTACAGCATGGCCAATGTCCACAGCATGTTTTGGCATAA GATTTGGAAATAGTACCATAAATGGGAGAAACAAAATTCAAGGGCATATTCCCAGTGGCA CAAGGGAGATTCCCTCCAGCCTCCAGGTAGATAATGAGTTTGTACTTTGTTAAGATCTAC TGAAGCGTTGTTTTGGTGCTTCAAGAATGAGGTTGACACTTGTGGATGATATAGCTTGTA GGTAGCTAATACAGTGCATATATATTCTCTTTGAGGGTACATAGACAGTGTGGATGACAA ATGGAATATGAAAGAAAAATGCAAAGCGTTTCTCATCCGCTCTTTTGCAGCTCACCCCGC CTTCCCATTTGTCTCTACAGAACGACTAATTCATCACATATGAACACAATGTAATTGAGC ATATAATTAAGTAAACTCTGAAAAGTAGCCCGGAAACTGCATCTCATTTTGATGATTCAA GGGGAGAAGGTCAAGATGTGCTTCATAGGGGAAATGGGGAATTTTGATTATCAAGGGGAG AAGGCAAGGGTGGAGACGAACTGCATACCTTCAAACAGTATATAAAATTCTGAACGTTTG CATGATCATATTTTGCGTCTCCAGGCTCCAGCAAACTAAGCTAAACGATTCATGCTCAAG TTGGCTTTCATGCATTAGTGGTTAATAAAGCAAATGTGTATTGCGAAAGCTGTATTATTA TGTGGCATATTTGGTCTTTGAGATATGCACTTCTCTACTACTTT