Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0208100-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:5822759:5824346:1 gene:Os07g0208100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Polygalacturonase A. (Os07t0208100-01)
Sequence

TTTCCTGGACATGCCTGTGGCTGTGTTGCTAAGAACATAGGGAAGCACTTTATTCTGAAA
GTGGAGAACCTGAAGGTGGTGAACAGCCAGCAAATCCAGATTTCAGTGGAGGATTGCACC
GACGTGAAGATGTCTCGCCTGTCGATCACAGCACCAGAAACTGCCCCAAACACCGATGGC
ATCCACATCACACGCAGCAGAGATGTTCAGGTGACAGACTGCACGATCAAGACCGGGGAT
GACTGCATGTCGATCGAGGACGGAACCAAGAACCTGCATGTCAAGAACATGGTGTGTGGA
CCGGGACACGGCATCAGCATCGGCAGCTTGGGGGATCATAATTCTGAAGCTCATGTCAAC
AATGTCACCGTGGACAATGTCAGGCTGTATGGCACAACGAATGGAGCTCGCATCAAGACA
TGGCAGGGAGGAAAGGGTTCAGCGAAGAACATCGTGTTCCAAAACATGGTCATGGACAAT
GTCTGGAACCCCATCATCATCGACCAAAACTACTGTGACTCTTCTACACCCTGCAAGCAA
CAGAAATCTGCAGTGGAGGTGAGCAATTTGCTGTTCAAGAACATCAGGGGCACAAGTGCA
TCAGAGGAGGCCATCGTGCTGCATTGCAGCAACAGTGTGCCTTGCCATGGCATAACCTTG
GAGAATGTCAATCTCACTGTCAAGGGAGGTAGCAGTAATGCCAAGAGCACCTGCCAGAAT
GCAGAATGGAAGAAATCTGGTGTGTCAGTCCATTGCCCTGTGGTTTCAAAAATTGATCTG
GAGCTGGTTGGAACATCAGATTAA

Peptide Sequence

PEP ID

Os07t0208100-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:5822759:5824346:1 gene:Os07g0208100 transcript:Os07t0208100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Polygalacturonase A. (Os07t0208100-01)
Sequence

FPGHACGCVAKNIGKHFILKVENLKVVNSQQIQISVEDCTDVKMSRLSITAPETAPNTDG
IHITRSRDVQVTDCTIKTGDDCMSIEDGTKNLHVKNMVCGPGHGISIGSLGDHNSEAHVN
NVTVDNVRLYGTTNGARIKTWQGGKGSAKNIVFQNMVMDNVWNPIIIDQNYCDSSTPCKQ
QKSAVEVSNLLFKNIRGTSASEEAIVLHCSNSVPCHGITLENVNLTVKGGSSNAKSTCQN
AEWKKSGVSVHCPVVSKIDLELVGTSD

Transcript Sequence

Transcript ID

Os07t0208100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:5822759:5824346:1 gene:Os07g0208100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Polygalacturonase A. (Os07t0208100-01)
Sequence

CTTATTATGCCTTGTTAGGTTCATTCTTTGAATAATTGAACTTAATTTGTTTGGAGAAGG
GGCGGCATGGTACCAATGACCAACAAAGAGGTAACTTTCCAGATTGCTATGTAGATGGTG
ATTTTACTGTCCTGTGTATGATCTGCCCCCATAATCATCATGATACAGTAAAGTTTTATA
TACAAGTCACCATGGTACAAAATTAAAGTGTTACAAAGTGCTCCCTCCGTTCTTTTTTGT
TTGACGTCCAACGTCAAACATTGAGGGATGTAGGTAGTATTCATTATGAAAATTTTGAAA
GCAGCAGTGATTGCTAGTATGATTTCCTGGACATGCCTGTGGCTGTGTTGCTAAGAACAT
AGGGAAGCACTTTATTCTGAAAGTGGAGAACCTGAAGGTGGTGAACAGCCAGCAAATCCA
GATTTCAGTGGAGGATTGCACCGACGTGAAGATGTCTCGCCTGTCGATCACAGCACCAGA
AACTGCCCCAAACACCGATGGCATCCACATCACACGCAGCAGAGATGTTCAGGTGACAGA
CTGCACGATCAAGACCGGGGATGACTGCATGTCGATCGAGGACGGAACCAAGAACCTGCA
TGTCAAGAACATGGTGTGTGGACCGGGACACGGCATCAGCATCGGCAGCTTGGGGGATCA
TAATTCTGAAGCTCATGTCAACAATGTCACCGTGGACAATGTCAGGCTGTATGGCACAAC
GAATGGAGCTCGCATCAAGACATGGCAGGGAGGAAAGGGTTCAGCGAAGAACATCGTGTT
CCAAAACATGGTCATGGACAATGTCTGGAACCCCATCATCATCGACCAAAACTACTGTGA
CTCTTCTACACCCTGCAAGCAACAGAAATCTGCAGTGGAGGTGAGCAATTTGCTGTTCAA
GAACATCAGGGGCACAAGTGCATCAGAGGAGGCCATCGTGCTGCATTGCAGCAACAGTGT
GCCTTGCCATGGCATAACCTTGGAGAATGTCAATCTCACTGTCAAGGGAGGTAGCAGTAA
TGCCAAGAGCACCTGCCAGAATGCAGAATGGAAGAAATCTGGTGTGTCAGTCCATTGCCC
TGTGGTTTCAAAAATTGATCTGGAGCTGGTTGGAACATCAGATTAAGTGGAGGATGTAGA
GTGTCAGATGATCTTTAGAGAAGATTATATGTAGAGTAGGAGGATAAATACGTAGCGGAA
ACTACAACTTTGGTGTAAACTTGAAATCTTAGGAGGGATACATGATGTGTACAGGTATAT
ACTAGATAGAGAGGCCCTAAAAAATTAACCGTGTGTGAAGCAACACTCGGAGTTCTTGTA
CTGAGTTCTTGTTCTCGAAGCCTCACATAAGTGATCAAAGCCCATTGCGAGCTATTTTTT
T