Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0207700-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:5806574:5811087:1 gene:Os07g0207700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHATTERING-H description:Protein containing CTD phosphatase domain, Seed shattering (Os07t0207700-01);Similar to CTD phosphatase-like protein. (Os07t0207700-02);Similar to CTD phosphatase-like protein. (Os07t0207700-03)
Sequence	ATGCAGACACGGAAAAAGGGTGCTACGAAAAATGCACTTGGGGATCCTGCCAGTACTAAA ACTAGTAGGCAACCCAGAAGAGCAGCTCAGGCGGCAGCTTCTGAAAAGAAAGTGAATGAT CTTATTACTTCTTCTGCCAAGAAGAAGAAGTCTGTTGGAGCCCCTTCAAAGAAAAACCGA GCTTCTAAAGGTGGAAGGAAGTTGATATCCGCATGTGATGCAGCTAATTCTGAAAATGAA GTTTCTCAGGTGGTCTCTGGTATACCACACGATCAGAAGCAGTCAGATGACAATGTTGAT GGGAGGCCATGCAATTCCATATTTTCCCCTGCATATCACCTTCAGAAAGAATGTGGTGCG AGTAACTTCGCCAAAGGCTTAGAACATAAAGGTGATACATTGGGTTCGGTTAGCTCAGTA GAAGAAAGGACAACACATGCTCAAGGTAGAAAAGAAGTTACCACCAGCAGATCTGAATCC ACTAGCCATGCAGTTAAGACTTGTGTTGGGAGCGATCACCATACACTAAATGCACAATCA GCTTTCTGTAACACACCGCTTGAAGAGGATGAATTCAGTGAACTCGGAAACCTTTCTTCA GAAGTGTCAGCAATATATCTTGCCATGCAGCAGTCCAAGTTGGAGTGCATTGATGAACAT AGTCAAGATTCAATCTCAACAGAAGGTTATGTTGATCCTGAGGACACTGAGGAATATGAT GATTTTGATCCATATGCTTTTATCAAGGATTTGCCTGATTTATCACTAGTGGTCCCCAAG TTTCGCCCTGTCCTACTCCCCAAGCAAACTCGGAGTTGTCCTACAACTACCCTGGTACTT GATCTGGATGAAACACTTGTGCATTCAACTCTTGAACCATGCGAGGATGCTGACTTCGCA TTTCCAGTTTATTTTAACTTCAGAGAACACACAATATATGTCCGATGCCGTCCCTATCTC AAAGAGTTCTTGGAGAGGGTTGCCAATTTGTTTGAGACAATCATTTTCACTGCAAGTCAA AGCATTTATGCAGAACAGCTTCTCAATGTTCTTGATCCTAAAAGAAAGTTGTTCCGTCAT CGTGTTTACCGTGATTCCTGTGTTTATGTGGAGGGAAACTACTTAAAGGATCTAACAGTT CTTGGACGTGACTTAACTCGTATAATGATTGTTGACAACTCTCCACAGGCTTTTGGATTC CAGTTAGACAATGGCATTCCTATTGAAAGCTGGTTTGATGATCCCAATGATCAGGAGCTG TTGAAACTGCTCCCATTCTTGGAAAGCCTGGTTGGCGTTGAGGATGTTCGACCATATATA GCCAGGAAGTTCAACCTCCGTGAGAAGGTAGCAACCGCATCGTCTCTTTCAATGGACCTG CAAATGTGA

Peptide Sequence

PEP ID	Os07t0207700-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:5806574:5811087:1 gene:Os07g0207700 transcript:Os07t0207700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHATTERING-H description:Protein containing CTD phosphatase domain, Seed shattering (Os07t0207700-01);Similar to CTD phosphatase-like protein. (Os07t0207700-02);Similar to CTD phosphatase-like protein. (Os07t0207700-03)
Sequence	MQTRKKGATKNALGDPASTKTSRQPRRAAQAAASEKKVNDLITSSAKKKKSVGAPSKKNR ASKGGRKLISACDAANSENEVSQVVSGIPHDQKQSDDNVDGRPCNSIFSPAYHLQKECGA SNFAKGLEHKGDTLGSVSSVEERTTHAQGRKEVTTSRSESTSHAVKTCVGSDHHTLNAQS AFCNTPLEEDEFSELGNLSSEVSAIYLAMQQSKLECIDEHSQDSISTEGYVDPEDTEEYD DFDPYAFIKDLPDLSLVVPKFRPVLLPKQTRSCPTTTLVLDLDETLVHSTLEPCEDADFA FPVYFNFREHTIYVRCRPYLKEFLERVANLFETIIFTASQSIYAEQLLNVLDPKRKLFRH RVYRDSCVYVEGNYLKDLTVLGRDLTRIMIVDNSPQAFGFQLDNGIPIESWFDDPNDQEL LKLLPFLESLVGVEDVRPYIARKFNLREKVATASSLSMDLQM

Transcript Sequence

Transcript ID	Os07t0207700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:5806574:5811087:1 gene:Os07g0207700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHATTERING-H description:Protein containing CTD phosphatase domain, Seed shattering (Os07t0207700-01);Similar to CTD phosphatase-like protein. (Os07t0207700-02);Similar to CTD phosphatase-like protein. (Os07t0207700-03)
Sequence	ATGCAGACACGGAAAAAGGGTGCTACGAAAAATGCACTTGGGGATCCTGCCAGTACTAAA ACTAGTAGGCAACCCAGAAGAGCAGCTCAGGCGGCAGCTTCTGAAAAGAAAGTGAATGAT CTTATTACTTCTTCTGCCAAGAAGAAGAAGTCTGTTGGAGCCCCTTCAAAGAAAAACCGA GCTTCTAAAGGTGGAAGGAAGTTGATATCCGCATGTGATGCAGCTAATTCTGAAAATGAA GTTTCTCAGGTGGTCTCTGGTATACCACACGATCAGAAGCAGTCAGATGACAATGTTGAT GGGAGGCCATGCAATTCCATATTTTCCCCTGCATATCACCTTCAGAAAGAATGTGGTGCG AGTAACTTCGCCAAAGGCTTAGAACATAAAGGTGATACATTGGGTTCGGTTAGCTCAGTA GAAGAAAGGACAACACATGCTCAAGGTAGAAAAGAAGTTACCACCAGCAGATCTGAATCC ACTAGCCATGCAGTTAAGACTTGTGTTGGGAGCGATCACCATACACTAAATGCACAATCA GCTTTCTGTAACACACCGCTTGAAGAGGATGAATTCAGTGAACTCGGAAACCTTTCTTCA GAAGTGTCAGCAATATATCTTGCCATGCAGCAGTCCAAGTTGGAGTGCATTGATGAACAT AGTCAAGATTCAATCTCAACAGAAGGTTATGTTGATCCTGAGGACACTGAGGAATATGAT GATTTTGATCCATATGCTTTTATCAAGGATTTGCCTGATTTATCACTAGTGGTCCCCAAG TTTCGCCCTGTCCTACTCCCCAAGCAAACTCGGAGTTGTCCTACAACTACCCTGGTACTT GATCTGGATGAAACACTTGTGCATTCAACTCTTGAACCATGCGAGGATGCTGACTTCGCA TTTCCAGTTTATTTTAACTTCAGAGAACACACAATATATGTCCGATGCCGTCCCTATCTC AAAGAGTTCTTGGAGAGGGTTGCCAATTTGTTTGAGACAATCATTTTCACTGCAAGTCAA AGCATTTATGCAGAACAGCTTCTCAATGTTCTTGATCCTAAAAGAAAGTTGTTCCGTCAT CGTGTTTACCGTGATTCCTGTGTTTATGTGGAGGGAAACTACTTAAAGGATCTAACAGTT CTTGGACGTGACTTAACTCGTATAATGATTGTTGACAACTCTCCACAGGCTTTTGGATTC CAGTTAGACAATGGCATTCCTATTGAAAGCTGGTTTGATGATCCCAATGATCAGGAGCTG TTGAAACTGCTCCCATTCTTGGAAAGCCTGGTTGGCGTTGAGGATGTTCGACCATATATA GCCAGGAAGTTCAACCTCCGTGAGAAGGTAGCAACCGCATCGTCTCTTTCAATGGACCTG CAAATGTGA