Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0194500-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:5116681:5119153:-1 gene:Os07g0194500 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os07t0194500-01)
Sequence

ATGGTGGCGGTGGTGATGATGGCGATGAGGAAGAGGATGCGCGGCGCGCTGCTGGCGCTC
GCGCTGCTGCTCACCGCGACGGCCGTCGTGCCGCTGCTCCTCCTCGGAGAGGCCGGGGAC
GACGGCGTCGGGGCCGTCGCCGCCGCGCCGCCGTTCAACGCGTCCCGCGTCAGGGCGGTG
TCGTGGAGGCCCAGGGTCTTCGTCTACAAGGGGTTCCTCTCCGACGACGAGTGCGACCAC
CTCGTCAAGCTGGGGAAGAGGAAGATGCAGAGGTCGATGGTGGCGGACAACAAGTCCGGC
AAGAGCGTCATGAGCGAGGTGCGGACCAGCTCCGGCATGTTCCTCGACAAGCGCCAGGAT
CCAGTGGTGAGCAGGATTGAAAAAAGAATTGCAGCATGGACCTTTCTTCCTGAAGAAAAT
GCTGAGAACATTCAGATACTCCGATACGAGCATGGGCAGAAGTATGAGCCGCACTTTGAT
TATTTCCATGACAAGGTCAATCAAGCACTGGGAGGCCACCGTTACGCGACGGTGCTCATG
TATTTGTCCACTGTCGAGAAGGGAGGCGAGACTGTGTTCCCCAATGCTGAGGGGTGGGAA
AATCAGCCCAAGGATGACACTTTCTCTGAATGTGCACAAAAAGGATTGGCAGTGAAACCA
GTTAAAGGCGACACGGTGCTCTTCTTTAGCCTTCATATCGATGGCGTACCGGACCCGCTC
AGCCTCCATGGGAGCTGCCCAGTGATAGAAGGTGAAAAATGGTCTGCACCAAAGTGGATC
CGTATCAGGTCCTATGAGCATCCTCCTGTCTCAAAGGTGACAGAAGGATGCTCCGACAAC
AGTGCACGTTGCGCGAAATGGGCTGAAGCTGGAGAATGCGAGAAGAACCCGGTATACATG
GTAGGTGCCGAGGGTTTGCCCGGCAATTGTCGGAAGAGTTGTGGCGTTTGTGATTCCTAG

Peptide Sequence

PEP ID

Os07t0194500-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:5116681:5119153:-1 gene:Os07g0194500 transcript:Os07t0194500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os07t0194500-01)
Sequence

MVAVVMMAMRKRMRGALLALALLLTATAVVPLLLLGEAGDDGVGAVAAAPPFNASRVRAV
SWRPRVFVYKGFLSDDECDHLVKLGKRKMQRSMVADNKSGKSVMSEVRTSSGMFLDKRQD
PVVSRIEKRIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKVNQALGGHRYATVLM
YLSTVEKGGETVFPNAEGWENQPKDDTFSECAQKGLAVKPVKGDTVLFFSLHIDGVPDPL
SLHGSCPVIEGEKWSAPKWIRIRSYEHPPVSKVTEGCSDNSARCAKWAEAGECEKNPVYM
VGAEGLPGNCRKSCGVCDS

Transcript Sequence

Transcript ID

Os07t0194500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:5116681:5119153:-1 gene:Os07g0194500 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os07t0194500-01)
Sequence

GCGTGTTGTAGCTGGAGTGTTCGAAGGAATTACTGGCTGGCACGCACGCGCGCACGGGCA
TGGTGGCGGTGGTGATGATGGCGATGAGGAAGAGGATGCGCGGCGCGCTGCTGGCGCTCG
CGCTGCTGCTCACCGCGACGGCCGTCGTGCCGCTGCTCCTCCTCGGAGAGGCCGGGGACG
ACGGCGTCGGGGCCGTCGCCGCCGCGCCGCCGTTCAACGCGTCCCGCGTCAGGGCGGTGT
CGTGGAGGCCCAGGGTCTTCGTCTACAAGGGGTTCCTCTCCGACGACGAGTGCGACCACC
TCGTCAAGCTGGGGAAGAGGAAGATGCAGAGGTCGATGGTGGCGGACAACAAGTCCGGCA
AGAGCGTCATGAGCGAGGTGCGGACCAGCTCCGGCATGTTCCTCGACAAGCGCCAGGATC
CAGTGGTGAGCAGGATTGAAAAAAGAATTGCAGCATGGACCTTTCTTCCTGAAGAAAATG
CTGAGAACATTCAGATACTCCGATACGAGCATGGGCAGAAGTATGAGCCGCACTTTGATT
ATTTCCATGACAAGGTCAATCAAGCACTGGGAGGCCACCGTTACGCGACGGTGCTCATGT
ATTTGTCCACTGTCGAGAAGGGAGGCGAGACTGTGTTCCCCAATGCTGAGGGGTGGGAAA
ATCAGCCCAAGGATGACACTTTCTCTGAATGTGCACAAAAAGGATTGGCAGTGAAACCAG
TTAAAGGCGACACGGTGCTCTTCTTTAGCCTTCATATCGATGGCGTACCGGACCCGCTCA
GCCTCCATGGGAGCTGCCCAGTGATAGAAGGTGAAAAATGGTCTGCACCAAAGTGGATCC
GTATCAGGTCCTATGAGCATCCTCCTGTCTCAAAGGTGACAGAAGGATGCTCCGACAACA
GTGCACGTTGCGCGAAATGGGCTGAAGCTGGAGAATGCGAGAAGAACCCGGTATACATGG
TAGGTGCCGAGGGTTTGCCCGGCAATTGTCGGAAGAGTTGTGGCGTTTGTGATTCCTAGG
ATGTGTTTATTTTCCTAAATCTGATGTTTGTGTCACTTGCTGAACACTTGATTTGTACAT
ACTTAGAGCATTTTCAGATGAAATAGGTAGCATTTGAATTTTCAG