Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0190000-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:4821207:4824665:1 gene:Os07g0190000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3 description:Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor. (Os07t0190000-01)
Sequence	ATGGCGCTCCAGGCATCGTCGTCGCCGTCCATGTTCCGCGCGATCCCGACGAACACCAAC GCTTCTTGCCGGCGAAAGTTGCAGGTCAGGGCGAGCGCGGCGGCGGCGGCGGCGAACGGC GGCGGGGATGGGAAGGTGATGATGAGGAAGGAGGCGGCGTCGGGCGCGTGGAAGATCGAC TACTCCGGCGAGAAGCCGGCGACGCCTCTGCTTGACACGGTGAACTACCCGGTCCACATG AAGAACCTCTCGACGCCGGAGCTGGAGCAGCTGGCGGCGGAGCTCCGGGCGGAGATCGTG CACACGGTGTCCAAGACCGGGGGCCACCTGAGCTCCAGCCTGGGCGTCGTCGAGCTCGCC GTGGCGCTGCACCACGTGTTCGACACGCCGGAGGACAAGATCATCTGGGACGTCGGGCAC CAGGCGTACCCGCACAAGATCCTGACGGGGCGGCGTTCGCGGATGCACACCATCCGGCAG ACCTCCGGGCTCGCCGGGTTCCCGAAGCGCGACGAGAGCGCGCACGACGCGTTCGGCGCG GGCCACAGCTCGACGAGCATCTCGGCGGCGCTCGGGATGGCGGTGGCGAGGGACCTCCTC GGGAAGAAGAACCACGTCATCTCGGTGATCGGCGACGGCGCCATGACCGCCGGCCAGGCG TACGAGGCGATGAACAACTCGGGCTACCTCGACTCCAACATGATCGTGGTGCTCAACGAC AACAAGCAGGTGTCCCTCCCGACGGCGACGCTCGACGGCCCCGCCACGCCCGTCGGCGCG CTGAGCAAGGCGCTGACGAAGCTCCAGTCGAGCACCAAGCTCCGCCGCCTCCGCGAGGCG GCGAAGACGGTGACGAAGCAGATCGGCGGGCAGGCGCACGAGGTGGCGGCGAAGGTGGAC GAGTACGCGCGCGGCATGGTGAGCGCGTCGGGCTCGACGCTGTTCGAGGAGCTCGGGCTC TACTACATCGGCCCCGTCGACGGCCACAGCGTCGACGACCTCGTCGCCATCTTCAACAAG GTGAAGTCGATGCCGGCGCCGGGGCCGGTGCTCGTCCACATCGTGACGGAGAAGGGGAAG GGCTACCCGCCGGCGGAGGCCGCCGCCGACCGGATGCACGGCGTGGTCAAGTTCGACCCG ACGACGGGGAGGCAGTTCAAGTCCAAGTGTTCGACGTTGTCCTACACCCAGTACTTCGCC GAGGCGCTGATCCGGGAGGCCGAGGCCGACGACAAGGTGGTCGGCATCCACGCCGCCATG GGCGGCGGCACGGGGCTCAACTACTTCCACAAGAGGTTCCCGGAGCGGTGCTTCGACGTG GGGATCGCGGAGCAGCACGCCGTGACGTTCGCCGCGGGGCTCGCCGCCGAGGGGCTCAAG CCGTTCTGCGCCATCTACTCGTCGTTCCTGCAGCGAGGGTACGACCAGGTGGTGCACGAC GTCGACCTGCAGCGGCTGCCGGTGAGGTTCGCCATGGACAGGGCGGGGCTCGTCGGCGCC GACGGGCCCACGCACTGCGGCGCGTTCGACGTCGCCTACATGGCGTGCCTGCCGAACATG GTCGTCATGGCGCCCGCCGACGAGGCCGAGCTCATGCACATGGTCGCCACCGCCGCAGCC ATCGACGACCGCCCTAGCTGCTTCCGCTTCCCCCGCGGCAATGGCATTGGCGCCGTCCTC CCTCCCAACCACAAGGGCACACCTCTCGAGGTCGGGAAGGGGAGGGTGCTCGTAGGAGGG AACAGGGTGGCGCTGCTAGGGTACGGCACGATGGTGCAGGCATGCATGAAGGCGGCAGAG GCGCTGAAGGAGCACGGCATCTACGTCACCGTCGCCGACGCGCGTTTCTGCAAGCCGCTC GACACAGGGCTTATCCGGGAGCTCGCTGCCGAGCACGAGGTCCTCGTCACTGTGGAGGAG GGCTCCATCGGAGGGTTCGGTTCTCACGTCGCCCACTACCTCAGCCTCAGCGGCCTCCTC GATGGCCCCCTCAAGTTGAGGTCCATGTTCTTGCCAGACAGGTACATAGACCATGGTGCA CCAGTAGACCAGCTTGAGGAGGCAGGATTGACACCAAGGCACATTGCTGCCACTGTGCTG TCCTTGCTTGGGAGGCCATTGGAGGCACTTCAGCTCAGCTGA

Peptide Sequence

PEP ID	Os07t0190000-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:4821207:4824665:1 gene:Os07g0190000 transcript:Os07t0190000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3 description:Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor. (Os07t0190000-01)
Sequence	MALQASSSPSMFRAIPTNTNASCRRKLQVRASAAAAAANGGGDGKVMMRKEAASGAWKID YSGEKPATPLLDTVNYPVHMKNLSTPELEQLAAELRAEIVHTVSKTGGHLSSSLGVVELA VALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAHDAFGA GHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTAGQAYEAMNNSGYLDSNMIVVLND NKQVSLPTATLDGPATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEVAAKVD EYARGMVSASGSTLFEELGLYYIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKGK GYPPAEAAADRMHGVVKFDPTTGRQFKSKCSTLSYTQYFAEALIREAEADDKVVGIHAAM GGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHD VDLQRLPVRFAMDRAGLVGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVATAAA IDDRPSCFRFPRGNGIGAVLPPNHKGTPLEVGKGRVLVGGNRVALLGYGTMVQACMKAAE ALKEHGIYVTVADARFCKPLDTGLIRELAAEHEVLVTVEEGSIGGFGSHVAHYLSLSGLL DGPLKLRSMFLPDRYIDHGAPVDQLEEAGLTPRHIAATVLSLLGRPLEALQLS

Transcript Sequence

Transcript ID	Os07t0190000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:4821207:4824665:1 gene:Os07g0190000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3 description:Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor. (Os07t0190000-01)
Sequence	ACTCCTCTTCCTCCTCCTCCTCCTCCTCCTGCGATCCCGGCGCAGCATCGATCGCCATTG CCACTCGAGCTCCGAGCTCCTCGGAAAAGCAGTGAACCCACCACTAAGCTCGCGACATCT CGCAACACAGCTTGCTTGCTGCGTCGCGGTATATAGAGCAGTAGCTAGCTTAGCTTGTCG ATCTCCAATGGCGCTCCAGGCATCGTCGTCGCCGTCCATGTTCCGCGCGATCCCGACGAA CACCAACGCTTCTTGCCGGCGAAAGTTGCAGGTCAGGGCGAGCGCGGCGGCGGCGGCGGC GAACGGCGGCGGGGATGGGAAGGTGATGATGAGGAAGGAGGCGGCGTCGGGCGCGTGGAA GATCGACTACTCCGGCGAGAAGCCGGCGACGCCTCTGCTTGACACGGTGAACTACCCGGT CCACATGAAGAACCTCTCGACGCCGGAGCTGGAGCAGCTGGCGGCGGAGCTCCGGGCGGA GATCGTGCACACGGTGTCCAAGACCGGGGGCCACCTGAGCTCCAGCCTGGGCGTCGTCGA GCTCGCCGTGGCGCTGCACCACGTGTTCGACACGCCGGAGGACAAGATCATCTGGGACGT CGGGCACCAGGCGTACCCGCACAAGATCCTGACGGGGCGGCGTTCGCGGATGCACACCAT CCGGCAGACCTCCGGGCTCGCCGGGTTCCCGAAGCGCGACGAGAGCGCGCACGACGCGTT CGGCGCGGGCCACAGCTCGACGAGCATCTCGGCGGCGCTCGGGATGGCGGTGGCGAGGGA CCTCCTCGGGAAGAAGAACCACGTCATCTCGGTGATCGGCGACGGCGCCATGACCGCCGG CCAGGCGTACGAGGCGATGAACAACTCGGGCTACCTCGACTCCAACATGATCGTGGTGCT CAACGACAACAAGCAGGTGTCCCTCCCGACGGCGACGCTCGACGGCCCCGCCACGCCCGT CGGCGCGCTGAGCAAGGCGCTGACGAAGCTCCAGTCGAGCACCAAGCTCCGCCGCCTCCG CGAGGCGGCGAAGACGGTGACGAAGCAGATCGGCGGGCAGGCGCACGAGGTGGCGGCGAA GGTGGACGAGTACGCGCGCGGCATGGTGAGCGCGTCGGGCTCGACGCTGTTCGAGGAGCT CGGGCTCTACTACATCGGCCCCGTCGACGGCCACAGCGTCGACGACCTCGTCGCCATCTT CAACAAGGTGAAGTCGATGCCGGCGCCGGGGCCGGTGCTCGTCCACATCGTGACGGAGAA GGGGAAGGGCTACCCGCCGGCGGAGGCCGCCGCCGACCGGATGCACGGCGTGGTCAAGTT CGACCCGACGACGGGGAGGCAGTTCAAGTCCAAGTGTTCGACGTTGTCCTACACCCAGTA CTTCGCCGAGGCGCTGATCCGGGAGGCCGAGGCCGACGACAAGGTGGTCGGCATCCACGC CGCCATGGGCGGCGGCACGGGGCTCAACTACTTCCACAAGAGGTTCCCGGAGCGGTGCTT CGACGTGGGGATCGCGGAGCAGCACGCCGTGACGTTCGCCGCGGGGCTCGCCGCCGAGGG GCTCAAGCCGTTCTGCGCCATCTACTCGTCGTTCCTGCAGCGAGGGTACGACCAGGTGGT GCACGACGTCGACCTGCAGCGGCTGCCGGTGAGGTTCGCCATGGACAGGGCGGGGCTCGT CGGCGCCGACGGGCCCACGCACTGCGGCGCGTTCGACGTCGCCTACATGGCGTGCCTGCC GAACATGGTCGTCATGGCGCCCGCCGACGAGGCCGAGCTCATGCACATGGTCGCCACCGC CGCAGCCATCGACGACCGCCCTAGCTGCTTCCGCTTCCCCCGCGGCAATGGCATTGGCGC CGTCCTCCCTCCCAACCACAAGGGCACACCTCTCGAGGTCGGGAAGGGGAGGGTGCTCGT AGGAGGGAACAGGGTGGCGCTGCTAGGGTACGGCACGATGGTGCAGGCATGCATGAAGGC GGCAGAGGCGCTGAAGGAGCACGGCATCTACGTCACCGTCGCCGACGCGCGTTTCTGCAA GCCGCTCGACACAGGGCTTATCCGGGAGCTCGCTGCCGAGCACGAGGTCCTCGTCACTGT GGAGGAGGGCTCCATCGGAGGGTTCGGTTCTCACGTCGCCCACTACCTCAGCCTCAGCGG CCTCCTCGATGGCCCCCTCAAGTTGAGGTCCATGTTCTTGCCAGACAGGTACATAGACCA TGGTGCACCAGTAGACCAGCTTGAGGAGGCAGGATTGACACCAAGGCACATTGCTGCCAC TGTGCTGTCCTTGCTTGGGAGGCCATTGGAGGCACTTCAGCTCAGCTGAATAATTCAGCA TGACTGTATGCATATACACATCAGCCGACAAATAAACAGGAAACTGATGATAGCTAATTT ATGAGAGATATGGAGATCTTCTCCTTCTCCATTATCCTTGGCCTAATTAACCATGGCCAC ATGGATATGGAGGGGGGGAGGTTCCAGTAAGAAGTAGGGTTACTAGGAAGAAGATGAAGG AGAAGGCAACAAAAAGCCCATGTGTATGTGTTTCTTGGCCTGTTGCAAAACATGCTTCCA AATGCAAAATGATAATGGAGGTGTTTGTGTACAAGAGGATGGAGACATGAAGATGGGGCA TGCATGTCCTTGCATGATAGTATTGACATGAGAAGGAGAAGGATATGCCTCTCATCTGGC ATTGTCAGGAGTGACATATATGAATGCATGGCTCCTTATGTTCTTTTGTTACTTTGTATA GATAACAAGTATAAGAAAGAATCATGTATTCTAGTAGTACTACATACATACAAACTCAGT TCCCTATGCAGAAGGAAAATGGAGAATAAGATGGAAAGTTTTTCTTGTT