Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0179000-03
CDS Infomation	cds chromosome:IRGSP-1.0:7:4156226:4158466:1 gene:Os07g0179000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0179000-01);Pentatricopeptide repeat domain containing protein. (Os07t0179000-02);Pentatricopeptide repeat domain containing protein. (Os07t0179000-03)
Sequence	ATGGCCTCGCCGCCGCCGGAGCGGGCGCCGGCGGCGGAGGCTCGCCGGCGCAGGACGACG GTGTACCACGGCCACCGCCGACCGTCTCCGCACCGCCCCACCGTCCGAGGCGGCGTATTC TCCGACCTCCGCGCCACCACCGCCGCCTCCTCCCAACCGAGGCCTCCCTCCTCCTCCTCC TCCTCCGCCCCATTCCGCCTCGCCGACTGGGACCCCTCCTCCTCCTCCTCCTCCACGCCT TCTCCTTCCGCCACCGCGGCCGCCCGCCGCCTCTCCCCGCTCGCGCGGTTCCTCCTCGAC GCGCTCCACCGCCACCAGCGCTGGGGCCCGCCCGTCGTCGCGGAACTCACCAAGCTCCGC CGCGTGGCCCCCGAGCTCGTCGCCGAGGTCCTCAGCGCTCGCCCGCCGCCGCCCCCGCCG CTCGCGCTCCCGTTCTTCCTGTGGGCGGGACGGCAGAAGGGCTTCCGCCACTGCTTCCCG GCGTTCCACGCGCTCGCCTCGCTCCTCTCCGCCGCTGGGCTCCCCGCCGCGGCCGACCAG CTTCCCGACCTCATGCGAGCCCATGGCAAGCCGGTCTCGCATTCCCAGCTCAACCTCCTC GTCAGGCTCCACACCGGCGCGCGTCGCCCGCTCCGCGCGCTCCACGCCCTCCGCCGCTTC CGCCACGAGTTCTCCGTGCAGCCTGAGGTCCACGCCTGCAACCGCGTGCTGGGAGCGCTG GCTGCGGCTGGGCATGTTGATGATACCCTCAAGCTGTTCGACGAAATGTCGCACTGCAGT GTGCGGCCTATGCCGGTGACATTCGCGATCATGGTGCGTGCGCTGGCGCGGGCGGGGATG ACGGATAAACTCCTGGAGATGATTGGGAGGATGCGGGCTGAGGTGTGCAGACCGGATGTG TTTGTGTACACCGCACTGGTGAAGACGATGGTTCGCTGGGGGCATATGGAGGGTTGCATC AGGGTTTGGGAGGAGATAAGAAGGGATCATGTGGATCCAGATACAATGGCTTACACCACA ATGATAGCTGGGCTATGCAATGCGGGAATGGTGGAGAAGGCAGAAGAATTGTTTGGGGAG ATGAGGAGGAAGGGTTTGCTGGTGGACAGGATGGTGTATGCGTCTCTCATTGATGGGTAT GTCTCCACAGGAAGGGTCAGCGATGGTTGTAGAGTGTTGAAAGAGATGGTGGATGCTGGT TACCGTGCAGACCTGGGGATCTATAACACACTGATTGGCGGGCTATGTGAGATAGAGCGG GAGGATAAAGCACACAAGATGTTTCAGATTGTCGTTCAGGAGGATCTAATACCAAGCTCC GAGACTGTTTCACCATTGCTGGCTCGTTATGCCGATAAGGGCGAGATGGTTAAGTTTTTT GGATTGGTTGATAAACTAGTGGAGCTAAGCTTGCCTATAGTTGAAATTTTAGTGGACTTC CTGAAGCTCTTTGCATGCAAGAGTGGCAATGAATTGAAGGCTGTGGAAGTTTTTAATGCT TTCAGAAGAAGGGGGCATTATAGTGTTGGCATTTATAACATTCTCATTGAGAATCTGCTG AAGATCAAGGAGAGGAAGAAAGCACTTGTGTTGTTCGAGGAAATGCAAAGTTCAGATGAC TGCAAGCCGGACTCATGTACATATAGCCATATGATCCCATGTTTTGTGGACGAAGGAAAT ATTGAAGAGGCTTGCTCGTGCTACAACTTGATGATGAAGGCAGTTTGGATACCAAGCATT TCAGCCTATTGTGCTCTTGTGAAAGGGTTGTGCAAAAAAGGAGAGATAAATGCAGCTATT TCACTTGTTAAGGATTGTCTTGGGAATGTGGAAAATGGGCCAATGGAATTCAAGTACACC TTGACTATTCTTGAAGCTTGCCAATCAAAAAGCCCAGAGAAGGTCATCAAAGTGGTGGAC GAAATGATTGAGTTAGGTTATTCCATAGAAGAAATTATATATTCTGCTATTATTTATGGT TTCTGCAAGTATGCAAGTTCAACTGAGGCAAGAAAAGTACTATCTACCATGAGAGATCGC AATATTATTTCAGAAGCCAATTATATTGTTTATGAGGATATGTTGAATGAGCATTTGAAG AATGTCACTGCAGATTTGGTGATATCTGGATTGAAATTTTTGGATCTTGAATCTAAATTA AAATGGAGAAGCAGAGATGATTGA

Peptide Sequence

PEP ID	Os07t0179000-03
PEP Infomation	pep chromosome:IRGSP-1.0:7:4156226:4158466:1 gene:Os07g0179000 transcript:Os07t0179000-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0179000-01);Pentatricopeptide repeat domain containing protein. (Os07t0179000-02);Pentatricopeptide repeat domain containing protein. (Os07t0179000-03)
Sequence	MASPPPERAPAAEARRRRTTVYHGHRRPSPHRPTVRGGVFSDLRATTAASSQPRPPSSSS SSAPFRLADWDPSSSSSSTPSPSATAAARRLSPLARFLLDALHRHQRWGPPVVAELTKLR RVAPELVAEVLSARPPPPPPLALPFFLWAGRQKGFRHCFPAFHALASLLSAAGLPAAADQ LPDLMRAHGKPVSHSQLNLLVRLHTGARRPLRALHALRRFRHEFSVQPEVHACNRVLGAL AAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDV FVYTALVKTMVRWGHMEGCIRVWEEIRRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGE MRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCEIER EDKAHKMFQIVVQEDLIPSSETVSPLLARYADKGEMVKFFGLVDKLVELSLPIVEILVDF LKLFACKSGNELKAVEVFNAFRRRGHYSVGIYNILIENLLKIKERKKALVLFEEMQSSDD CKPDSCTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSISAYCALVKGLCKKGEINAAI SLVKDCLGNVENGPMEFKYTLTILEACQSKSPEKVIKVVDEMIELGYSIEEIIYSAIIYG FCKYASSTEARKVLSTMRDRNIISEANYIVYEDMLNEHLKNVTADLVISGLKFLDLESKL KWRSRDD

Transcript Sequence

Transcript ID	Os07t0179000-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:4156226:4158466:1 gene:Os07g0179000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0179000-01);Pentatricopeptide repeat domain containing protein. (Os07t0179000-02);Pentatricopeptide repeat domain containing protein. (Os07t0179000-03)
Sequence	AAACTCACCATGGCCTCGCCGCCGCCGGAGCGGGCGCCGGCGGCGGAGGCTCGCCGGCGC AGGACGACGGTGTACCACGGCCACCGCCGACCGTCTCCGCACCGCCCCACCGTCCGAGGC GGCGTATTCTCCGACCTCCGCGCCACCACCGCCGCCTCCTCCCAACCGAGGCCTCCCTCC TCCTCCTCCTCCTCCGCCCCATTCCGCCTCGCCGACTGGGACCCCTCCTCCTCCTCCTCC TCCACGCCTTCTCCTTCCGCCACCGCGGCCGCCCGCCGCCTCTCCCCGCTCGCGCGGTTC CTCCTCGACGCGCTCCACCGCCACCAGCGCTGGGGCCCGCCCGTCGTCGCGGAACTCACC AAGCTCCGCCGCGTGGCCCCCGAGCTCGTCGCCGAGGTCCTCAGCGCTCGCCCGCCGCCG CCCCCGCCGCTCGCGCTCCCGTTCTTCCTGTGGGCGGGACGGCAGAAGGGCTTCCGCCAC TGCTTCCCGGCGTTCCACGCGCTCGCCTCGCTCCTCTCCGCCGCTGGGCTCCCCGCCGCG GCCGACCAGCTTCCCGACCTCATGCGAGCCCATGGCAAGCCGGTCTCGCATTCCCAGCTC AACCTCCTCGTCAGGCTCCACACCGGCGCGCGTCGCCCGCTCCGCGCGCTCCACGCCCTC CGCCGCTTCCGCCACGAGTTCTCCGTGCAGCCTGAGGTCCACGCCTGCAACCGCGTGCTG GGAGCGCTGGCTGCGGCTGGGCATGTTGATGATACCCTCAAGCTGTTCGACGAAATGTCG CACTGCAGTGTGCGGCCTATGCCGGTGACATTCGCGATCATGGTGCGTGCGCTGGCGCGG GCGGGGATGACGGATAAACTCCTGGAGATGATTGGGAGGATGCGGGCTGAGGTGTGCAGA CCGGATGTGTTTGTGTACACCGCACTGGTGAAGACGATGGTTCGCTGGGGGCATATGGAG GGTTGCATCAGGGTTTGGGAGGAGATAAGAAGGGATCATGTGGATCCAGATACAATGGCT TACACCACAATGATAGCTGGGCTATGCAATGCGGGAATGGTGGAGAAGGCAGAAGAATTG TTTGGGGAGATGAGGAGGAAGGGTTTGCTGGTGGACAGGATGGTGTATGCGTCTCTCATT GATGGGTATGTCTCCACAGGAAGGGTCAGCGATGGTTGTAGAGTGTTGAAAGAGATGGTG GATGCTGGTTACCGTGCAGACCTGGGGATCTATAACACACTGATTGGCGGGCTATGTGAG ATAGAGCGGGAGGATAAAGCACACAAGATGTTTCAGATTGTCGTTCAGGAGGATCTAATA CCAAGCTCCGAGACTGTTTCACCATTGCTGGCTCGTTATGCCGATAAGGGCGAGATGGTT AAGTTTTTTGGATTGGTTGATAAACTAGTGGAGCTAAGCTTGCCTATAGTTGAAATTTTA GTGGACTTCCTGAAGCTCTTTGCATGCAAGAGTGGCAATGAATTGAAGGCTGTGGAAGTT TTTAATGCTTTCAGAAGAAGGGGGCATTATAGTGTTGGCATTTATAACATTCTCATTGAG AATCTGCTGAAGATCAAGGAGAGGAAGAAAGCACTTGTGTTGTTCGAGGAAATGCAAAGT TCAGATGACTGCAAGCCGGACTCATGTACATATAGCCATATGATCCCATGTTTTGTGGAC GAAGGAAATATTGAAGAGGCTTGCTCGTGCTACAACTTGATGATGAAGGCAGTTTGGATA CCAAGCATTTCAGCCTATTGTGCTCTTGTGAAAGGGTTGTGCAAAAAAGGAGAGATAAAT GCAGCTATTTCACTTGTTAAGGATTGTCTTGGGAATGTGGAAAATGGGCCAATGGAATTC AAGTACACCTTGACTATTCTTGAAGCTTGCCAATCAAAAAGCCCAGAGAAGGTCATCAAA GTGGTGGACGAAATGATTGAGTTAGGTTATTCCATAGAAGAAATTATATATTCTGCTATT ATTTATGGTTTCTGCAAGTATGCAAGTTCAACTGAGGCAAGAAAAGTACTATCTACCATG AGAGATCGCAATATTATTTCAGAAGCCAATTATATTGTTTATGAGGATATGTTGAATGAG CATTTGAAGAATGTCACTGCAGATTTGGTGATATCTGGATTGAAATTTTTGGATCTTGAA TCTAAATTAAAATGGAGAAGCAGAGATGATTGAGAAATCTTTGTACAGTTGCTACATACT AGGTACAACCTGCTTCACTTC