Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0172900-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:3830318:3840267:1 gene:Os07g0172900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to biopterin transport-related protein BT1. (Os07t0172900-01);Hypothetical conserved gene. (Os07t0172900-02)
Sequence

ATGACGAAGACGGCAACACCTGCATCTGTGTCATCCAGATTCATTCCTAGATATCAGGTG
GGCTCAAGTAAAGTTGACACAAGTGAAAGATACTTTGATGAGTGGCAAAAGAAGCTGCCC
AATACAGATGAAATCCGCAAGAGCAAGCCTAGATCAAGATATTTCACAATATCTGGGGTG
GAACTATCCCCAGATAATATGGCAGTTGCAACTGTGTATTTTGTGCAAGGGGTTTTAGGC
CTTGCTCGACTTGCTGTGAGTTTTTACTTAAAAGATGATCTTCATCTTGATCCTGCAGAG
ACTGCAGTTATATCTGGCTTCTCATCCTTGCCATGGTTGATCAAGCCCCTGTATGGCTTT
ATCAGTGATTCCATCCCACTCTTTGGATATCGACGAAGGTCATACCTTATTCTGTCAGGA
TTCCTTGGTGCTCTTTCATGGGGTTTGATGGCTACATTGGTGGATAGTAAATACAGTGCA
GCATTCTCTATTCTGCTGGGATCACTTTCTGTTGCCTTCTCAGATGTTGTGGTGGATTCT
ATGGTTGTTGAGAGAGCTCGTGGCGAATCACAGAGTACATCTGGATCTCTCCAGTCACTA
TGTTGGGGATCCTCAGCTTTTGGAGGAATAGTGAGTGCATATTTCAGTGGTTCACTTGTG
GATACTTATGGAGTAAGATTTGTCTTTGGTGTTACAGCTTTTTTACCCCTGATGACATCT
GCTGTTGCAGTTCTTGTAAATGAACACCGTCTATCTTCAGGGGAACGTGCTATGTCACAC
TCTGGTTCAGGATTCATTGAGACCTCTAAGCAGCATATCCGGCAGCTTTGGACTTCAGTA
AAGCAACCTAACATTTTCTTGCCCACCTTGTTTATATTCCTCTGGCAAGCAACACCTAAG
TCGGATTCCGCCATGTTTTTCTTCATCACAAATAAGCTTGGGTTCACGCCAGAATTTCTA
GGACGTGTAAAGCTTGTTACATCTATTGCTTCATTGCTTGGTGTTGGGCTTTATAACTAT
TTTCTAAAGGCGGTTCCTCTAAGGAAAATCTTCCTGGCGACAACCATCATAGGTTCAGCC
CTTGGAATGACACAGGTTCTTCTTGTTACTGGGCTTAATCGGCAGTTTGGAATCAGTGAT
GAATGGTTCTCTATTGGGGATTCGTTAATCATTACAGTCCTAAGTCAGGCTTCATTTATG
CCAGTTTTGGTGTTAGCAGCTAAATTGTGTCCACCAGGAATGGAAGCAACTCTGTTTGCC
ACTTTGATGTCCATCTCTAATGCTGGAAGTGTTAGTGGTGGTCTAGTTGGTGCTGGTCTA
ACTCAATTTTTTGGAGTCACTAAGGACAGCTTTAAGAATCTAGCTCTCTTGATTGTCATC
TGCAATCTCAGTGCGCTGCTGCCTCTGCCTCTTCTAGGCCTCCTTCCAGAGGAATCAGGT
AATGCAGATGACGAAGAAACAAAACATAATTGA

Peptide Sequence

PEP ID

Os07t0172900-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:3830318:3840267:1 gene:Os07g0172900 transcript:Os07t0172900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to biopterin transport-related protein BT1. (Os07t0172900-01);Hypothetical conserved gene. (Os07t0172900-02)
Sequence

MTKTATPASVSSRFIPRYQVGSSKVDTSERYFDEWQKKLPNTDEIRKSKPRSRYFTISGV
ELSPDNMAVATVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVISGFSSLPWLIKPLYGF
ISDSIPLFGYRRRSYLILSGFLGALSWGLMATLVDSKYSAAFSILLGSLSVAFSDVVVDS
MVVERARGESQSTSGSLQSLCWGSSAFGGIVSAYFSGSLVDTYGVRFVFGVTAFLPLMTS
AVAVLVNEHRLSSGERAMSHSGSGFIETSKQHIRQLWTSVKQPNIFLPTLFIFLWQATPK
SDSAMFFFITNKLGFTPEFLGRVKLVTSIASLLGVGLYNYFLKAVPLRKIFLATTIIGSA
LGMTQVLLVTGLNRQFGISDEWFSIGDSLIITVLSQASFMPVLVLAAKLCPPGMEATLFA
TLMSISNAGSVSGGLVGAGLTQFFGVTKDSFKNLALLIVICNLSALLPLPLLGLLPEESG
NADDEETKHN

Transcript Sequence

Transcript ID

Os07t0172900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:3830318:3840267:1 gene:Os07g0172900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to biopterin transport-related protein BT1. (Os07t0172900-01);Hypothetical conserved gene. (Os07t0172900-02)
Sequence

CTAGTCTTTATCCTTTGCTTTCCACTTGATTTCTCCACTGACTCATCCCCATCATCTCCT
CTTCTGTTCAGAATCTCCTCCTGCTAAAGCATTTCGTTGCTGATTTTTTTTTTTGCTGGA
ATTCTTGTTGTGGGGTAAGGCGCAAAGCGCTGCGAGGCAAGGCATAACAGCTGAAAGTTG
CAATCTTTATCGGTTTTGGATTCCTCCTCCTCCTGCTGCTGCTCTCTCTCCTCCAAGGCT
CCAACACATCCTGGTCCCGAGAGAAAAAGGGGAGATATTTTTTTGGGGGCGCATGATTCG
ATCCCTTGTTGTTTGCTGTTGTTGCCTTGCTGCGCAAAGATTTGGTCCTTTCTCGGTCTG
TTTCTTGGCCTGTTCAGCTCGGTGGTGGTGGTGTTGTTGGTGGTGCAGTTCTTGGAGTCA
CATGGTTGGTGGTGGTGTGGGCAGTTCTTGATCCAGGCTCAGATTGAAACTGGCGGTCGA
GAGATTCCTGGTTGCAGGAGAAGTTCTTGGTCGCATTTCGGGTGGTGGTGGTGGTGGTGG
TGGTGGCAGTTCTTGATCTGCTCCCTCGGGAGAATTCGATTGATGTGGTGGGTTCTCTTC
TTCTTCTTCTCCTTGGAGCTCAGTTCCCCAATTCGCCATTTTGATGAGGAGCTCCCACTG
TGAGAGCTACTGCGCTCCTCCCTTGTGCAACCTCCCCTGCCTCCCCAAATCCAAAGACGA
TTCGACCACGGACGATGCCGCCGCCGCGTCGTCTCCAACTCCGGCCACCGTCGTCGCCGC
AGCTTTCGCTGAGGACAAGCCTCCTCCGCTGCAGAAGATTGAGGCGGCGGTGACGGCAAA
CAAGGATCATGATGATGATGGTGATGGTGGTGGTGATGAGGGTAGCAAGGAAGTGGTGGT
GACAGTGGTTCCCAAGAGTAGCCTGAAGAAGACTAATTGTGAGGACAGTAAGAATGTGGT
GAAGGGCAATGTGAAATGGATGGATTTGCTGGGGAAGGATCTCACTCAAGTTAAAGAATT
TGAGCCAAGCGAATCTGGAGACTCGGATGACGAAGACGGCAACACCTGCATCTGTGTCAT
CCAGATTCATTCCTAGATATCAGGTGGGCTCAAGTAAAGTTGACACAAGTGAAAGATACT
TTGATGAGTGGCAAAAGAAGCTGCCCAATACAGATGAAATCCGCAAGAGCAAGCCTAGAT
CAAGATATTTCACAATATCTGGGGTGGAACTATCCCCAGATAATATGGCAGTTGCAACTG
TGTATTTTGTGCAAGGGGTTTTAGGCCTTGCTCGACTTGCTGTGAGTTTTTACTTAAAAG
ATGATCTTCATCTTGATCCTGCAGAGACTGCAGTTATATCTGGCTTCTCATCCTTGCCAT
GGTTGATCAAGCCCCTGTATGGCTTTATCAGTGATTCCATCCCACTCTTTGGATATCGAC
GAAGGTCATACCTTATTCTGTCAGGATTCCTTGGTGCTCTTTCATGGGGTTTGATGGCTA
CATTGGTGGATAGTAAATACAGTGCAGCATTCTCTATTCTGCTGGGATCACTTTCTGTTG
CCTTCTCAGATGTTGTGGTGGATTCTATGGTTGTTGAGAGAGCTCGTGGCGAATCACAGA
GTACATCTGGATCTCTCCAGTCACTATGTTGGGGATCCTCAGCTTTTGGAGGAATAGTGA
GTGCATATTTCAGTGGTTCACTTGTGGATACTTATGGAGTAAGATTTGTCTTTGGTGTTA
CAGCTTTTTTACCCCTGATGACATCTGCTGTTGCAGTTCTTGTAAATGAACACCGTCTAT
CTTCAGGGGAACGTGCTATGTCACACTCTGGTTCAGGATTCATTGAGACCTCTAAGCAGC
ATATCCGGCAGCTTTGGACTTCAGTAAAGCAACCTAACATTTTCTTGCCCACCTTGTTTA
TATTCCTCTGGCAAGCAACACCTAAGTCGGATTCCGCCATGTTTTTCTTCATCACAAATA
AGCTTGGGTTCACGCCAGAATTTCTAGGACGTGTAAAGCTTGTTACATCTATTGCTTCAT
TGCTTGGTGTTGGGCTTTATAACTATTTTCTAAAGGCGGTTCCTCTAAGGAAAATCTTCC
TGGCGACAACCATCATAGGTTCAGCCCTTGGAATGACACAGGTTCTTCTTGTTACTGGGC
TTAATCGGCAGTTTGGAATCAGTGATGAATGGTTCTCTATTGGGGATTCGTTAATCATTA
CAGTCCTAAGTCAGGCTTCATTTATGCCAGTTTTGGTGTTAGCAGCTAAATTGTGTCCAC
CAGGAATGGAAGCAACTCTGTTTGCCACTTTGATGTCCATCTCTAATGCTGGAAGTGTTA
GTGGTGGTCTAGTTGGTGCTGGTCTAACTCAATTTTTTGGAGTCACTAAGGACAGCTTTA
AGAATCTAGCTCTCTTGATTGTCATCTGCAATCTCAGTGCGCTGCTGCCTCTGCCTCTTC
TAGGCCTCCTTCCAGAGGAATCAGGTAATGCAGATGACGAAGAAACAAAACATAATTGAC
TTGAGGATTTCTCTAGCTCTGCCCGTCCAACTCAGATACAGCCCATCGTCTTGGAGTTGA
ATGAATCTGCAGGGAAAGTATGAACTCATACTGCGGAAGTGCAGATAGCTTCAATTGGCC
ACTGCTTTCATCACTTAGGTCAAACTTTTTTTAGTCTGACCATTAACTTGCAAGCTGGTA
CCATGGTTCAAGATCATCAGAAAATGAGCTTCAATGCTAAACAATACAGGTATATCATTT
TTTTCTCCTTTTCCATTTTACAGTTTAGCACGTATACCAAAGTCTAATTTACAATGTGTC
TATGTGTACTGAGCAAGTGTTGTAATTTTTGTACTCTTTATGTTGCTGATTTAACCCCAT
GAAAAGTAGATGAGGGGGTTAACTATTGTAGTTAAACCATGAATTCCTTATAAATATGAA
TGTATTCTGCC