Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0170000-00
CDS Infomation

cds chromosome:IRGSP-1.0:7:3711848:3712695:1 gene:Os07g0170000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Brn1-like protein. (Os07t0170000-00)
Sequence

ATGAGAGACTATGAGAGTACTCGCTTCATTGATCAGCAAAGCACAATCTCCATGGCCACG
AACTCCGCTCCGGCGCAGGCGCAGGCGGCGGCGCTGCCACTCTCCGGCCGCGTGGCCATC
GTCACCGGCGCGTCGCGCGGCATCGGCCGCGCCATCGCCATCCACCTGGCCTCGCTCGGC
GCCAGCGTCGTCGTCGGCTACGCCTCCAGCTCCGGGCCAGCCGAGGCGCTCGCCGCCGAG
CTCCCGAGCGCGGTGGCCGTGAAGGCCGACGTCTCCGACGAGGCCGGCGCGAGGTCCCTT
TTCGACGCCGCCGAGGCCGCGTTCGGCGGCGGCGCCGCGCACATCCTCGTGGCCTGCGCG
GGCCTCGCCGTCAGCACGTACCCGAGGCTGGCCGACACGTCCGCCGCCGACTTCGACGCC
GCGTTCGCCGTGAACGCCCGCGGCGCGTTCCTGTGCCTCCGGGAGGCCGCCAACCGGCTG
CGCCGCGGCGGCGGCGGCCGGATCGTGGCCGTGTCGTCGACGCTGGCGGCTACGCTGCTG
CCCGGGTACGCGGCGTACGCGGCGTCGAAGGCCGCCGTTGAGGCGATGGTGCGGGTGATG
GCGAAGGAGGTCGGGGCGTCGCGGGTGACCGTGAACTGCGTCGCGCCGGGCCCCGTGGCG
ACGGAGCTGTTCTTCGCCGGCAAGAGCGAGGAGGCGGTGGAGAGGTTCAAGGCCGGGAAC
CCGATGGGGCGGCTCGGCGAGGTCGGCGACATCGCTCCGGTGGTCGGCTTCCTCTGCACC
GACGCCGCCGAGTGGGTCAACGGCCAGGTGATTCGAGTCAATGGCGGCATTGCTTAG

Peptide Sequence

PEP ID

Os07t0170000-00
PEP Infomation

pep chromosome:IRGSP-1.0:7:3711848:3712695:1 gene:Os07g0170000 transcript:Os07t0170000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Brn1-like protein. (Os07t0170000-00)
Sequence

MRDYESTRFIDQQSTISMATNSAPAQAQAAALPLSGRVAIVTGASRGIGRAIAIHLASLG
ASVVVGYASSSGPAEALAAELPSAVAVKADVSDEAGARSLFDAAEAAFGGGAAHILVACA
GLAVSTYPRLADTSAADFDAAFAVNARGAFLCLREAANRLRRGGGGRIVAVSSTLAATLL
PGYAAYAASKAAVEAMVRVMAKEVGASRVTVNCVAPGPVATELFFAGKSEEAVERFKAGN
PMGRLGEVGDIAPVVGFLCTDAAEWVNGQVIRVNGGIA

Transcript Sequence

Transcript ID

Os07t0170000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:3711848:3712695:1 gene:Os07g0170000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Brn1-like protein. (Os07t0170000-00)
Sequence

AAATCCACGCGATGAGAGACTATGAGAGTACTCGCTTCATTGATCAGCAAAGCACAATCT
CCATGGCCACGAACTCCGCTCCGGCGCAGGCGCAGGCGGCGGCGCTGCCACTCTCCGGCC
GCGTGGCCATCGTCACCGGCGCGTCGCGCGGCATCGGCCGCGCCATCGCCATCCACCTGG
CCTCGCTCGGCGCCAGCGTCGTCGTCGGCTACGCCTCCAGCTCCGGGCCAGCCGAGGCGC
TCGCCGCCGAGCTCCCGAGCGCGGTGGCCGTGAAGGCCGACGTCTCCGACGAGGCCGGCG
CGAGGTCCCTTTTCGACGCCGCCGAGGCCGCGTTCGGCGGCGGCGCCGCGCACATCCTCG
TGGCCTGCGCGGGCCTCGCCGTCAGCACGTACCCGAGGCTGGCCGACACGTCCGCCGCCG
ACTTCGACGCCGCGTTCGCCGTGAACGCCCGCGGCGCGTTCCTGTGCCTCCGGGAGGCCG
CCAACCGGCTGCGCCGCGGCGGCGGCGGCCGGATCGTGGCCGTGTCGTCGACGCTGGCGG
CTACGCTGCTGCCCGGGTACGCGGCGTACGCGGCGTCGAAGGCCGCCGTTGAGGCGATGG
TGCGGGTGATGGCGAAGGAGGTCGGGGCGTCGCGGGTGACCGTGAACTGCGTCGCGCCGG
GCCCCGTGGCGACGGAGCTGTTCTTCGCCGGCAAGAGCGAGGAGGCGGTGGAGAGGTTCA
AGGCCGGGAACCCGATGGGGCGGCTCGGCGAGGTCGGCGACATCGCTCCGGTGGTCGGCT
TCCTCTGCACCGACGCCGCCGAGTGGGTCAACGGCCAGGTGATTCGAGTCAATGGCGGCA
TTGCTTAG