Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0168000-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:3645846:3656754:-1 gene:Os07g0168000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PNP1 description:Similar to Polyribonucleotide phophorylase (Fragment). (Os07t0168000-01)
Sequence	ATGCTCGCGACCCCCGGCGCGCTCCACCACCTCCTCCTCCTCCCGCCGCCGCCGCACACG CAACTCGCCTTCCACCATGCCGTCGGGGGCGTCCCCGCGGCGCTGCTCCCGCTCCCCCGC CCCCGCCGCGTAGCAGCGAGCGCCTCCACCTCGCGTCGCGGTGGCGCGCGAAGGAGAGCG GCGGGGGCTAGGGTTAGGGCTTCCGTGGGCGAGGAGGCGCCCCCCGTGGTGACCGAGGAG GCGAGCACCTCCGGCGGCCCGACCAAGTTCTCCACGAAGATTCCCGTCGGCGACCGCCAC ATACTGGTGGAGACAGGCCACATAGGGAGGCAAGCAAGCGCTTCTGTAATGGTCACGGAT GGCGAAACAATTGTTTACTCCTCCGTCTGTCTTGCTGATACACCAAACGATCCTTCTGAT TTTTTCCCAATGTCAGTTCACTATCAAGAACGCCTTTCAGCTGCTGGAAGAACTAGTGGT GGTTTCTTTAAACGAGAAGGAAGGGCAAAAGACCATGAGGTTTTAGTATGCAGATTGATA GATAGGCCCCTACGCCCTACTATGCCCAAGGGCTTCTACTACGAAACTCAGATTCTATCC TGGGTTTTCAGTTATGATGGTATTCATTCCCCCGATAGCTTGGCTATCACAGCTGCTGGT GTAGCCATGGCACTCTCTGAAGTTCCAAATAAACAAACAATTGCTGGAGTGAGAGTTGGT ATGATCAATGATCAGTTTGTTGTTAACCCAACCACTGAACAAATGGATGACTCAGAGTTG GACTTGGTGATGGCTGGGACCGATAGTGCCATACTGATGATAGAGGGCTATTGTGATTTT CTAACTGAGGAGAAGCTACTTCAAGCTGTGGAAACTGGGCAGGGGGCAATTCGAGAAATC TGCAAAGCAATTGATGGTCTTGTCCAGAAATGTGGAAAGAAGAAAATGTTCGATGCTATC GACTTACCACCCCCTGAACTCTACAGGCATGTTGAAGATATTTCTGGAGATGAGTTGGTG AAGGCGCTGCAAATAAAAGAGAAGATCCTCAGAAGAAAAGCTCTTTCAGCATTGGAGGAG AAAGTAATAACAATACTTTCTGAACAAGGATATGTTGCTAAAGATGAGTCATCTGGAGTC AGTGAAAATTTAGCTGATGTAATTGAAGAAGAGGATGAGGATGAAGTTATAGTGGATGGT GAAGTGGATGAAGGTGAAGTTCATATCAAGCCAGTATCAAGGAAACCCCCACGTCAGTTA TTCTCAGAAGTTGACGTCAAGCTAGTCTTCAAGGAAGTTTCATCCAAATTTTTACGGAGA CGGATTGTAGAGGGTGGAAAGCGAAGTGATGGAAGGAGTCCTTGTGAGCTTCGTCCCATT AATTCTCAATGTGGATTACTTCCTCGAGCACATGGTAGTGCACTATTCACAAGGGGAGAA ACCCAGGCACTGGCTGTGGTCACTTTAGGTGACTATCAGATGGCACAGCGAATTGATAAC CTTGTTGATACTGAGGAATCGAAAAGTTTCTATCTTCAGTACACATTTCCTCCATCATCT GTTGGTGAAGTTGGTCGAATTGGAGCACCTAATAGGAGGGAGATAGGACATGGAATGCTT GCAGAAAGAGCCCTGGAACCAATTTTACCTCCTGAAGAGGATTTTCCTTACACTATTCGA GTTGAGAGTACTATCACCGAAAGTAATGGCTCCTCCAGCATGGCTTCTGTCTGTGGAGGT TGTTTAGCACTTCAAGACGCTGGTGTTCCAATAAAGTTCCCTGTTGCTGGAATAGCAATG GGCTTGGTTCTTGATACACTGGAATTTGGTGGAGATGGCAAGCCACTTATTCTCTCTGAT ATTACGGGTGCTGAAGATGCCTCTGGTGATATGGATTTTAAGGTTGCTGGTAATGAAAAT GGTATATCTGCTTTCCAAATGGACATCAAGGTAGTGGGGATAACTCTGCCTATAATGGAA CACGCCCTTCTTCAAGCTAGAGATGGTAGAAAACATATTTTAAATGAAATGTCAAAATGT TCACCTCCACCAGCAAAAGTACTCTCTCCATACGCTCCCTTAATCCATGTCATGAAGGTC AAGCCAAACAAGGTGAATTTAATAATTGGTTCTGGTGGAAAGACGATAAAAAGCATAATT GAGGAGACTGGCGTTGATGCTATTGACACTGGAGATGATGGCACAGTAAAAATTACCGCT AGGGACTTATCAAGCTTAGAGAAGTCAAAAGCTATAATTGCTAACCTTACCATGGTTCCA AAAGTTGGAGAAATTTACAGGAACTGCGAGATCAAAACAATTGCACCATATGGAGCTTTT GTTGAAATTGCACCAGGGCGTGAGGGTTTATGCCATATCAGTGAGTTAAGTTCGAGTTGG TTGGCCAAGGCTGAGGATGCTTTCAAAGTCGGCGATCGCATTGATGTCAAGCTAATTGAG ATAAATGACAAGGGTCAACTTCGCCTAAGTTCTCGAGCCTTACTGCCTGATGCAAATCAA GAATCTAGCAGCAAGCAACAAGCAGGTGGTTCAACTAGGGAGAAGGCACCACAGAAGGAT AATCTTGTTAAGATGACAACAAGAAGACCCAGACGTAAGAAGCAAGCAGAGGCATCTACA GCTGAAAACAATGCAACTGCTTCACCGAAGGATTTGGCTTCACAAGGCAGCGAAATGGGA ACGGAATAG

Peptide Sequence

PEP ID	Os07t0168000-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:3645846:3656754:-1 gene:Os07g0168000 transcript:Os07t0168000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PNP1 description:Similar to Polyribonucleotide phophorylase (Fragment). (Os07t0168000-01)
Sequence	MLATPGALHHLLLLPPPPHTQLAFHHAVGGVPAALLPLPRPRRVAASASTSRRGGARRRA AGARVRASVGEEAPPVVTEEASTSGGPTKFSTKIPVGDRHILVETGHIGRQASASVMVTD GETIVYSSVCLADTPNDPSDFFPMSVHYQERLSAAGRTSGGFFKREGRAKDHEVLVCRLI DRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAGVAMALSEVPNKQTIAGVRVG MINDQFVVNPTTEQMDDSELDLVMAGTDSAILMIEGYCDFLTEEKLLQAVETGQGAIREI CKAIDGLVQKCGKKKMFDAIDLPPPELYRHVEDISGDELVKALQIKEKILRRKALSALEE KVITILSEQGYVAKDESSGVSENLADVIEEEDEDEVIVDGEVDEGEVHIKPVSRKPPRQL FSEVDVKLVFKEVSSKFLRRRIVEGGKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGE TQALAVVTLGDYQMAQRIDNLVDTEESKSFYLQYTFPPSSVGEVGRIGAPNRREIGHGML AERALEPILPPEEDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAM GLVLDTLEFGGDGKPLILSDITGAEDASGDMDFKVAGNENGISAFQMDIKVVGITLPIME HALLQARDGRKHILNEMSKCSPPPAKVLSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSII EETGVDAIDTGDDGTVKITARDLSSLEKSKAIIANLTMVPKVGEIYRNCEIKTIAPYGAF VEIAPGREGLCHISELSSSWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDANQ ESSSKQQAGGSTREKAPQKDNLVKMTTRRPRRKKQAEASTAENNATASPKDLASQGSEMG TE

Transcript Sequence

Transcript ID	Os07t0168000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:3645846:3656754:-1 gene:Os07g0168000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PNP1 description:Similar to Polyribonucleotide phophorylase (Fragment). (Os07t0168000-01)
Sequence	CATTCGAAGCGTCGCCACCCTCTCGTCTCCCCCTCCCGCCTCCGCCTCGCCGCCGCCTCG AGATGCTCGCGACCCCCGGCGCGCTCCACCACCTCCTCCTCCTCCCGCCGCCGCCGCACA CGCAACTCGCCTTCCACCATGCCGTCGGGGGCGTCCCCGCGGCGCTGCTCCCGCTCCCCC GCCCCCGCCGCGTAGCAGCGAGCGCCTCCACCTCGCGTCGCGGTGGCGCGCGAAGGAGAG CGGCGGGGGCTAGGGTTAGGGCTTCCGTGGGCGAGGAGGCGCCCCCCGTGGTGACCGAGG AGGCGAGCACCTCCGGCGGCCCGACCAAGTTCTCCACGAAGATTCCCGTCGGCGACCGCC ACATACTGGTGGAGACAGGCCACATAGGGAGGCAAGCAAGCGCTTCTGTAATGGTCACGG ATGGCGAAACAATTGTTTACTCCTCCGTCTGTCTTGCTGATACACCAAACGATCCTTCTG ATTTTTTCCCAATGTCAGTTCACTATCAAGAACGCCTTTCAGCTGCTGGAAGAACTAGTG GTGGTTTCTTTAAACGAGAAGGAAGGGCAAAAGACCATGAGGTTTTAGTATGCAGATTGA TAGATAGGCCCCTACGCCCTACTATGCCCAAGGGCTTCTACTACGAAACTCAGATTCTAT CCTGGGTTTTCAGTTATGATGGTATTCATTCCCCCGATAGCTTGGCTATCACAGCTGCTG GTGTAGCCATGGCACTCTCTGAAGTTCCAAATAAACAAACAATTGCTGGAGTGAGAGTTG GTATGATCAATGATCAGTTTGTTGTTAACCCAACCACTGAACAAATGGATGACTCAGAGT TGGACTTGGTGATGGCTGGGACCGATAGTGCCATACTGATGATAGAGGGCTATTGTGATT TTCTAACTGAGGAGAAGCTACTTCAAGCTGTGGAAACTGGGCAGGGGGCAATTCGAGAAA TCTGCAAAGCAATTGATGGTCTTGTCCAGAAATGTGGAAAGAAGAAAATGTTCGATGCTA TCGACTTACCACCCCCTGAACTCTACAGGCATGTTGAAGATATTTCTGGAGATGAGTTGG TGAAGGCGCTGCAAATAAAAGAGAAGATCCTCAGAAGAAAAGCTCTTTCAGCATTGGAGG AGAAAGTAATAACAATACTTTCTGAACAAGGATATGTTGCTAAAGATGAGTCATCTGGAG TCAGTGAAAATTTAGCTGATGTAATTGAAGAAGAGGATGAGGATGAAGTTATAGTGGATG GTGAAGTGGATGAAGGTGAAGTTCATATCAAGCCAGTATCAAGGAAACCCCCACGTCAGT TATTCTCAGAAGTTGACGTCAAGCTAGTCTTCAAGGAAGTTTCATCCAAATTTTTACGGA GACGGATTGTAGAGGGTGGAAAGCGAAGTGATGGAAGGAGTCCTTGTGAGCTTCGTCCCA TTAATTCTCAATGTGGATTACTTCCTCGAGCACATGGTAGTGCACTATTCACAAGGGGAG AAACCCAGGCACTGGCTGTGGTCACTTTAGGTGACTATCAGATGGCACAGCGAATTGATA ACCTTGTTGATACTGAGGAATCGAAAAGTTTCTATCTTCAGTACACATTTCCTCCATCAT CTGTTGGTGAAGTTGGTCGAATTGGAGCACCTAATAGGAGGGAGATAGGACATGGAATGC TTGCAGAAAGAGCCCTGGAACCAATTTTACCTCCTGAAGAGGATTTTCCTTACACTATTC GAGTTGAGAGTACTATCACCGAAAGTAATGGCTCCTCCAGCATGGCTTCTGTCTGTGGAG GTTGTTTAGCACTTCAAGACGCTGGTGTTCCAATAAAGTTCCCTGTTGCTGGAATAGCAA TGGGCTTGGTTCTTGATACACTGGAATTTGGTGGAGATGGCAAGCCACTTATTCTCTCTG ATATTACGGGTGCTGAAGATGCCTCTGGTGATATGGATTTTAAGGTTGCTGGTAATGAAA ATGGTATATCTGCTTTCCAAATGGACATCAAGGTAGTGGGGATAACTCTGCCTATAATGG AACACGCCCTTCTTCAAGCTAGAGATGGTAGAAAACATATTTTAAATGAAATGTCAAAAT GTTCACCTCCACCAGCAAAAGTACTCTCTCCATACGCTCCCTTAATCCATGTCATGAAGG TCAAGCCAAACAAGGTGAATTTAATAATTGGTTCTGGTGGAAAGACGATAAAAAGCATAA TTGAGGAGACTGGCGTTGATGCTATTGACACTGGAGATGATGGCACAGTAAAAATTACCG CTAGGGACTTATCAAGCTTAGAGAAGTCAAAAGCTATAATTGCTAACCTTACCATGGTTC CAAAAGTTGGAGAAATTTACAGGAACTGCGAGATCAAAACAATTGCACCATATGGAGCTT TTGTTGAAATTGCACCAGGGCGTGAGGGTTTATGCCATATCAGTGAGTTAAGTTCGAGTT GGTTGGCCAAGGCTGAGGATGCTTTCAAAGTCGGCGATCGCATTGATGTCAAGCTAATTG AGATAAATGACAAGGGTCAACTTCGCCTAAGTTCTCGAGCCTTACTGCCTGATGCAAATC AAGAATCTAGCAGCAAGCAACAAGCAGGTGGTTCAACTAGGGAGAAGGCACCACAGAAGG ATAATCTTGTTAAGATGACAACAAGAAGACCCAGACGTAAGAAGCAAGCAGAGGCATCTA CAGCTGAAAACAATGCAACTGCTTCACCGAAGGATTTGGCTTCACAAGGCAGCGAAATGG GAACGGAATAGGGTGGACAGAAGCAGTGTTCACTTTATCAAATGATTGCTTGTGAAGCTT TGCCAACTTAAAACGTATCACCACAAAATGCAGTGAACATATGACAGGAACTCCATTGCA AGGGTCAAGACATTTACCCAGCCGTAAGTGAAGGATTAATTGGCTGATGTTTTGAGTGTT CATGCTTGATGATATGTTGAATTTTGACGCTGCCGTAGAAGCGAAATTCATTTTGAGTTT AGTTGCTGCTTCATACTGCACTGTTTGGCTGTGTTTCAAGTCTTTCAGATGTACGAAGCT GCATTCTGCTGATTAGTTTCGCAGATTTTTTGTCAGAAGAGT