Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0167100-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:3602446:3610749:1 gene:Os07g0167100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Yarrowia lipolytica chromosome A of strain CLIB99 of Yarrowia lipolytica. (Os07t0167100-01)
Sequence

TCATTGGCTTCTGAAACCTGTGAAGAGCTCTTCACTGCAAATGCCCCTCGCATTGACCTA
GCGTTGAATGGTGTTGAGGTTTTTGTGAATGCAAGTGGAAGCCATCATCAGTTAAGGAAG
CTCAGTCTTAGGATTGATTCGATGAGAAATGCAACCCTTGCATGTGGTGGTGTTTACATG
TATGCTAATCAACAGGGTTGTGATGGTGGACGCCTTTATTATGATGGTTGCTGCTGCATC
GCTGTCAATGGAGACGTTGTTGCACAGGGATCTCAATTCTCGTTAAAAGACGTTGAAGTA
TTGGATGCTCTGGTAGATCTTGATGCAGTATCAAGTTATCGAGCATCTGTTTCTAGTTTT
AGAGAGCAAGCAAGTCACCGAACCAAAGTACCTTTTGTTAAGGTACCATATAAGCTTTGT
AAGCCATTTCAGAGTGGAATGGTTCCAACTGGTCCTGTTGAGGTTATGTATCATCGTCCT
GAAGAGGAGATTGCATTTGGACCTAGTTGTTGGTTATGGGATTATCTGCGGAGAAGTCGA
GCATCAGGATTTTTGCTGCCACTGTCTGGTGGTGCGGATAGTTCATCTGTTGCAGCAATA
GTTGGTTGCATGTGCCAGCTTGTCGTAAAAGATATAGAGAATGGAGATGAGCAAGTTAAG
GCAGATGCTATGCGGATTGGCCAGTACAAGGATGGAGAGTTCCCTAAAGATAGCAGAGAG
CTCGCAAAACGTTTATTTTACACTGTTTACATGGGGACTGAAAATAGTTCTGAAGGTACT
CGATCACGAGCGAAAATGCTTGCTGAAGAGATCGGTTCATTCCACTTGGATGTACCAATT
GATAGTATAGTATCTGCATTGCTTTCTTTGTTTGAAAGATTGACTGGGAAACGCCCACGG
TACAAGGTTGATGGGGGTTCCAATACTGAGAATCTGGGATTGCAAAATATTCAAGCTCGA
ATCAGGATGGTACTAGCCTTTATGATGGCGTCACTTATGCCATGGGTTCATAACAAATCC
GGGTTCTATCTTGTTCTGGGAAGTTCAAATGTGGATGAAGGATTGCGTGGTTATTTGACG
AAATATGACTGCAGCTCGGCAGATATAAATCCCATTGGAAGTGTAAGTAAGCAGGACCTC
CGGGCTTTCCTGCGATGGGCAGCAGTTCATCTTCACTATTCTTCCCTTGCTGAGGTTGAA
GCGGCGCCACCTACTGCAGAGCTTGAGCCGATCCGTGCGGACTATAATCAGTTGGATGAG
GTGGACATGGGAATGACATACGAGGAGTTGTCAATATATGGAAGGTTAAGGAAAATTTTC
CGTTGTGGTCCTGTTTCAATGTTTCAGAACCTGTGCCACAGGTGGTGTGGGACACTATCC
CCCTCCGAAGTGGCTGACAAAGTGAAGCACTTCTTCAAGTACTACGCGATAAACCGGCAT
AAGATGACTGTCCTGACACCATCCTATCATGCGGAGAGCTATTCGCCCGAGGATAACCGG
TTCGATCTTCGGCAATTTCTGTACAACGCAAGATGGCCTTATCAATTCCGGAAGATCGAT
GAGCTTGTGCAAGACATGGATAAAGATGGCAAATGGGTGAACTCTACAGAAGGGGAGCTG
AGAAGACGCAAGGGCGTTAGATCCGCGGAAGGAGGCGGAATGGGTGTCGTCGCCGTGGGA
TCTGCCAATCCAAGTGCTGGATCGTGA

Peptide Sequence

PEP ID

Os07t0167100-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:3602446:3610749:1 gene:Os07g0167100 transcript:Os07t0167100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Yarrowia lipolytica chromosome A of strain CLIB99 of Yarrowia lipolytica. (Os07t0167100-01)
Sequence

SLASETCEELFTANAPRIDLALNGVEVFVNASGSHHQLRKLSLRIDSMRNATLACGGVYM
YANQQGCDGGRLYYDGCCCIAVNGDVVAQGSQFSLKDVEVLDALVDLDAVSSYRASVSSF
REQASHRTKVPFVKVPYKLCKPFQSGMVPTGPVEVMYHRPEEEIAFGPSCWLWDYLRRSR
ASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIENGDEQVKADAMRIGQYKDGEFPKDSRE
LAKRLFYTVYMGTENSSEGTRSRAKMLAEEIGSFHLDVPIDSIVSALLSLFERLTGKRPR
YKVDGGSNTENLGLQNIQARIRMVLAFMMASLMPWVHNKSGFYLVLGSSNVDEGLRGYLT
KYDCSSADINPIGSVSKQDLRAFLRWAAVHLHYSSLAEVEAAPPTAELEPIRADYNQLDE
VDMGMTYEELSIYGRLRKIFRCGPVSMFQNLCHRWCGTLSPSEVADKVKHFFKYYAINRH
KMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVQDMDKDGKWVNSTEGEL
RRRKGVRSAEGGGMGVVAVGSANPSAGS

Transcript Sequence

Transcript ID

Os07t0167100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:3602446:3610749:1 gene:Os07g0167100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Yarrowia lipolytica chromosome A of strain CLIB99 of Yarrowia lipolytica. (Os07t0167100-01)
Sequence

ATCATTGGCTTCTGAAACCTGTGAAGAGCTCTTCACTGCAAATGCCCCTCGCATTGACCT
AGCGTTGAATGGTGTTGAGGTTTTTGTGAATGCAAGTGGAAGCCATCATCAGTTAAGGAA
GCTCAGTCTTAGGATTGATTCGATGAGAAATGCAACCCTTGCATGTGGTGGTGTTTACAT
GTATGCTAATCAACAGGGTTGTGATGGTGGACGCCTTTATTATGATGGTTGCTGCTGCAT
CGCTGTCAATGGAGACGTTGTTGCACAGGGATCTCAATTCTCGTTAAAAGACGTTGAAGT
ATTGGATGCTCTGGTAGATCTTGATGCAGTATCAAGTTATCGAGCATCTGTTTCTAGTTT
TAGAGAGCAAGCAAGTCACCGAACCAAAGTACCTTTTGTTAAGGTACCATATAAGCTTTG
TAAGCCATTTCAGAGTGGAATGGTTCCAACTGGTCCTGTTGAGGTTATGTATCATCGTCC
TGAAGAGGAGATTGCATTTGGACCTAGTTGTTGGTTATGGGATTATCTGCGGAGAAGTCG
AGCATCAGGATTTTTGCTGCCACTGTCTGGTGGTGCGGATAGTTCATCTGTTGCAGCAAT
AGTTGGTTGCATGTGCCAGCTTGTCGTAAAAGATATAGAGAATGGAGATGAGCAAGTTAA
GGCAGATGCTATGCGGATTGGCCAGTACAAGGATGGAGAGTTCCCTAAAGATAGCAGAGA
GCTCGCAAAACGTTTATTTTACACTGTTTACATGGGGACTGAAAATAGTTCTGAAGGTAC
TCGATCACGAGCGAAAATGCTTGCTGAAGAGATCGGTTCATTCCACTTGGATGTACCAAT
TGATAGTATAGTATCTGCATTGCTTTCTTTGTTTGAAAGATTGACTGGGAAACGCCCACG
GTACAAGGTTGATGGGGGTTCCAATACTGAGAATCTGGGATTGCAAAATATTCAAGCTCG
AATCAGGATGGTACTAGCCTTTATGATGGCGTCACTTATGCCATGGGTTCATAACAAATC
CGGGTTCTATCTTGTTCTGGGAAGTTCAAATGTGGATGAAGGATTGCGTGGTTATTTGAC
GAAATATGACTGCAGCTCGGCAGATATAAATCCCATTGGAAGTGTAAGTAAGCAGGACCT
CCGGGCTTTCCTGCGATGGGCAGCAGTTCATCTTCACTATTCTTCCCTTGCTGAGGTTGA
AGCGGCGCCACCTACTGCAGAGCTTGAGCCGATCCGTGCGGACTATAATCAGTTGGATGA
GGTGGACATGGGAATGACATACGAGGAGTTGTCAATATATGGAAGGTTAAGGAAAATTTT
CCGTTGTGGTCCTGTTTCAATGTTTCAGAACCTGTGCCACAGGTGGTGTGGGACACTATC
CCCCTCCGAAGTGGCTGACAAAGTGAAGCACTTCTTCAAGTACTACGCGATAAACCGGCA
TAAGATGACTGTCCTGACACCATCCTATCATGCGGAGAGCTATTCGCCCGAGGATAACCG
GTTCGATCTTCGGCAATTTCTGTACAACGCAAGATGGCCTTATCAATTCCGGAAGATCGA
TGAGCTTGTGCAAGACATGGATAAAGATGGCAAATGGGTGAACTCTACAGAAGGGGAGCT
GAGAAGACGCAAGGGCGTTAGATCCGCGGAAGGAGGCGGAATGGGTGTCGTCGCCGTGGG
ATCTGCCAATCCAAGTGCTGGATCGTGAGAAAGCAACCGCTTTGCAGGATGTTTGGTTTT
CTCAAGTCACATCGAAGTTTCTCTAATTCACACTTTTATTCAATAATTTCTTTTTTTTTT
TGATAAAATCCCTGTGTGTGGACGGGGATTGAGGTTGTCTCATCCAACCAATGTAAGTGT
CCATAACTAATCAAACAGGAAGCGTCCATAAACCACACACAGCCACACAGGCGTGAGTAT
GCTAAGATATCAAAATTTCT