Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0159600-00
CDS Infomation

cds chromosome:IRGSP-1.0:7:3188806:3189565:1 gene:Os07g0159600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING-H2 finger protein ATL2I. (Os07t0159600-00)
Sequence

ATGAGCGCGGGGAGCCCATCGCCGGGTGGCGGCGATGGCGGCGGCGGCGGCGGGAGTATA
TTTGGGTCGGGTGGCATCGGCGGGTTCGGCTACGGCGTCGGCGCCTCCGTCGGCGTGCTC
CTCGTCGTCTCCACCGTCGCGCTCGCCATCTACTTCTGCAGCCGCACGTCCATGCCGGTG
GCCGCCGCCGCCGCCGGCCGCCCGCCATCTCCGCCTCGACCACGCGACGACGGCGACGTC
GAGACCGGCACCGGCATCGACGACGCGACGCTGGAGGCGTTCCCGGAGGTGGTCTACGGC
GAGGCGAGGAAGGCTCGCGGCGGCGCGGCGGCGACGCAGACGTGCTGCCCCGTGTGCCTG
GAGAACTACGGCGACGGCGACGTGCTCCGCGCGCTGCCGGACTGCGGCCACCTGTTCCAC
CGCGAGTGCGTGGACCCGTGGCTCCGGCAGCGGCCGACGTGCCCCGTCTGCCGGACGTCG
CCGCTGCCGAGCCCCATGCCGACGCCGCTCGCCGAGGTGACGCCGCTGGCTCTCGTCAGG
CCGTCGTGA

Peptide Sequence

PEP ID

Os07t0159600-00
PEP Infomation

pep chromosome:IRGSP-1.0:7:3188806:3189565:1 gene:Os07g0159600 transcript:Os07t0159600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING-H2 finger protein ATL2I. (Os07t0159600-00)
Sequence

MSAGSPSPGGGDGGGGGGSIFGSGGIGGFGYGVGASVGVLLVVSTVALAIYFCSRTSMPV
AAAAAGRPPSPPRPRDDGDVETGTGIDDATLEAFPEVVYGEARKARGGAAATQTCCPVCL
ENYGDGDVLRALPDCGHLFHRECVDPWLRQRPTCPVCRTSPLPSPMPTPLAEVTPLALVR
PS

Transcript Sequence

Transcript ID

Os07t0159600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:3188806:3189565:1 gene:Os07g0159600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING-H2 finger protein ATL2I. (Os07t0159600-00)
Sequence

GCTTGCTTGCTTGCTTGCGTTAGCTAGGCAATGAGCGCGGGGAGCCCATCGCCGGGTGGC
GGCGATGGCGGCGGCGGCGGCGGGAGTATATTTGGGTCGGGTGGCATCGGCGGGTTCGGC
TACGGCGTCGGCGCCTCCGTCGGCGTGCTCCTCGTCGTCTCCACCGTCGCGCTCGCCATC
TACTTCTGCAGCCGCACGTCCATGCCGGTGGCCGCCGCCGCCGCCGGCCGCCCGCCATCT
CCGCCTCGACCACGCGACGACGGCGACGTCGAGACCGGCACCGGCATCGACGACGCGACG
CTGGAGGCGTTCCCGGAGGTGGTCTACGGCGAGGCGAGGAAGGCTCGCGGCGGCGCGGCG
GCGACGCAGACGTGCTGCCCCGTGTGCCTGGAGAACTACGGCGACGGCGACGTGCTCCGC
GCGCTGCCGGACTGCGGCCACCTGTTCCACCGCGAGTGCGTGGACCCGTGGCTCCGGCAG
CGGCCGACGTGCCCCGTCTGCCGGACGTCGCCGCTGCCGAGCCCCATGCCGACGCCGCTC
GCCGAGGTGACGCCGCTGGCTCTCGTCAGGCCGTCGTGACGTGACGTCATCAGGTGAGCC
GTGTGTTCTTGGTCTGATGCTCTCTGTTTATTTTTCTTTTCTTTTTTTCGTTTGTAATAC
ATCAGAAAATATCACTAGAAGTAGACAAAAAATGAAGCAAATTTGTTTGTTTCCACGGAT
GTAAATTTGTTCATTTGGGAATTTGACGACTAGAGTTAGA