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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0147550-00
CDS Infomation

cds chromosome:IRGSP-1.0:7:2456969:2458136:1 gene:Os07g0147550 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PSII subunit PsbR2, photosystem II subunit PsbR2 description:Similar to Photosystem II 10 kDa polypeptide, chloroplast. (Os07t0147550-00)
Sequence

ATGGCAGCCTCTGTCATGGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAA
CAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCC
AAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACCGAACCTG
AAAGACGGTGTTGACGCGTCCGGAAGGCCAATCAAGGGGAAAGGGGTCTACCAGTTTGCC
AGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCA
CCAAGTGGTGATGTTTATACTGGAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTT
TCTGGAATTCTGCTGGCTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGA

Peptide Sequence

PEP ID

Os07t0147550-00
PEP Infomation

pep chromosome:IRGSP-1.0:7:2456969:2458136:1 gene:Os07g0147550 transcript:Os07t0147550-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PSII subunit PsbR2, photosystem II subunit PsbR2 description:Similar to Photosystem II 10 kDa polypeptide, chloroplast. (Os07t0147550-00)
Sequence

MAASVMASCALKPSPSPFLEQTRIRAIQPSSRPSLFRVMAKKAKKIQTSQPFGPGGGPNL
KDGVDASGRPIKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDVYTGGKTGLLLWAVTL
SGILLAGALLVYNTSALAS

Transcript Sequence

Transcript ID

Os07t0147550-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:2456969:2458136:1 gene:Os07g0147550 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PSII subunit PsbR2, photosystem II subunit PsbR2 description:Similar to Photosystem II 10 kDa polypeptide, chloroplast. (Os07t0147550-00)
Sequence

AGAAAAGAGACTGACAGCAAATTGGAGAGTAAGAGATAGCATCTTACGCATGGCAGCCTC
TGTCATGGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAAT
CCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCAAAAAAGCAAA
GAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACCGAACCTGAAAGACGGTGT
TGACGCGTCCGGAAGGCCAATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGG
AGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGA
TGTTTATACTGGAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCT
GCTGGCTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTG
AAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGT
ACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAGTAATGTTCTTAT
GTGTTCGTGCAATAATATAGAAGCTCAATAAGCAGAGT