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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0129700-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:1566125:1572085:1 gene:Os07g0129700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX 15 description:KNOTTED-type homeodomain protein, KNOX protein, Shoot formation during embryogenesis, Control of seed shattering, Control of internode development, Repression of lignin biosynthesis (Os07t0129700-01)
Sequence

ATGGATCAGAGCTTTGGGAATCTTGGAGGAGGAGGAGGAGCAGGGGGGAGCGGCAAGGCG
GCGGCGTCGTCGTTCCTGCAGCTGCCGCTGTCCACGGCGGCGGCGGCCACCGCGTACTAC
GGCACGCCGCTCGCCTTGCACCAGGCGGCGGCCGCGGCTGGCCCGTCGCAGTACCACGGT
CACGGTCACCCCCACCACGGCGGCGGCCACCACCACAGCAAGCACGGCGGCGCCGGTGGT
GGGGAGATCTCGGCGGCGGAGGCCGAGTCCATCAAGGCCAAGATCATGGCGCACCCCCAG
TACTCCGCCCTCCTCGCAGCCTACCTCGACTGCCAGAAAGTCGGAGCGCCGCCGGAGGTG
CTGGAGAGGCTGACCGCCACGGCGGCAAAGCTGGACGCCCGCCCTCCCGGCCGCCACGAC
GCGCGCGACCCGGAGCTCGACCAGTTCATGGAGGCGTACTGCAACATGCTGGCCAAGTAC
AGGGAGGAGCTGACGCGGCCGATCGACGAGGCCATGGAGTTCCTCAAGAGGGTGGAGTCG
CAGCTCGACACCATCGCCGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTC
CTCGCCGATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTGGC
CGCGAAAACGAGCCGCCTGAGATCGACCCGCGCGCTGAGGATAAGGAGCTCAAGTTTCAG
CTTCTGAAGAAGTACAGTGGCTACTTGAGCAGCCTAAGGCAAGAATTTTCCAAGAAAAAG
AAGAAAGGAAAGCTGCCTAAGGAGGCCAGGCAGAAGCTGCTTCACTGGTGGGAGCTGCAC
TACAAGTGGCCTTACCCCTCAGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTA
GATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCG
GAGGACATGCCGTTCGTCATGATGGAAGGTTTTCACCCACAGAATGCTGCTGCATTGTAC
ATGGATGGCCCGTTCATGGCAGATGGAATGTACCGCCTCGGTTCGTGA

Peptide Sequence

PEP ID

Os07t0129700-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:1566125:1572085:1 gene:Os07g0129700 transcript:Os07t0129700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX 15 description:KNOTTED-type homeodomain protein, KNOX protein, Shoot formation during embryogenesis, Control of seed shattering, Control of internode development, Repression of lignin biosynthesis (Os07t0129700-01)
Sequence

MDQSFGNLGGGGGAGGSGKAAASSFLQLPLSTAAAATAYYGTPLALHQAAAAAGPSQYHG
HGHPHHGGGHHHSKHGGAGGGEISAAEAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEV
LERLTATAAKLDARPPGRHDARDPELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVES
QLDTIAGGAHGGGAGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQ
LLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGL
DQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPFMADGMYRLGS

Transcript Sequence

Transcript ID

Os07t0129700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:1566125:1572085:1 gene:Os07g0129700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX 15 description:KNOTTED-type homeodomain protein, KNOX protein, Shoot formation during embryogenesis, Control of seed shattering, Control of internode development, Repression of lignin biosynthesis (Os07t0129700-01)
Sequence

TCTCCCCTCCCTCTCGCCATTGGAGCTAGACAGCTCGAGCTCCAGGAGGAAGAAGAGAGA
GAGCCTAGCTGCTAGGGTTTCCATCGGATTTGGTTTTTTATTTTCTTTTTGTTTCTTGTG
TGTGTTTTGATGGATCAGAGCTTTGGGAATCTTGGAGGAGGAGGAGGAGCAGGGGGGAGC
GGCAAGGCGGCGGCGTCGTCGTTCCTGCAGCTGCCGCTGTCCACGGCGGCGGCGGCCACC
GCGTACTACGGCACGCCGCTCGCCTTGCACCAGGCGGCGGCCGCGGCTGGCCCGTCGCAG
TACCACGGTCACGGTCACCCCCACCACGGCGGCGGCCACCACCACAGCAAGCACGGCGGC
GCCGGTGGTGGGGAGATCTCGGCGGCGGAGGCCGAGTCCATCAAGGCCAAGATCATGGCG
CACCCCCAGTACTCCGCCCTCCTCGCAGCCTACCTCGACTGCCAGAAAGTCGGAGCGCCG
CCGGAGGTGCTGGAGAGGCTGACCGCCACGGCGGCAAAGCTGGACGCCCGCCCTCCCGGC
CGCCACGACGCGCGCGACCCGGAGCTCGACCAGTTCATGGAGGCGTACTGCAACATGCTG
GCCAAGTACAGGGAGGAGCTGACGCGGCCGATCGACGAGGCCATGGAGTTCCTCAAGAGG
GTGGAGTCGCAGCTCGACACCATCGCCGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCG
CGCCTCCTCCTCGCCGATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGAC
CCAAGTGGCCGCGAAAACGAGCCGCCTGAGATCGACCCGCGCGCTGAGGATAAGGAGCTC
AAGTTTCAGCTTCTGAAGAAGTACAGTGGCTACTTGAGCAGCCTAAGGCAAGAATTTTCC
AAGAAAAAGAAGAAAGGAAAGCTGCCTAAGGAGGCCAGGCAGAAGCTGCTTCACTGGTGG
GAGCTGCACTACAAGTGGCCTTACCCCTCAGAGACGGAGAAGATTGCGCTTGCGGAATCG
ACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGG
AAGCCATCGGAGGACATGCCGTTCGTCATGATGGAAGGTTTTCACCCACAGAATGCTGCT
GCATTGTACATGGATGGCCCGTTCATGGCAGATGGAATGTACCGCCTCGGTTCGTGAACC
TCGATCTCGATCATCGGCGTGTTTGATGAGAGATCCAATGCCAAGATAAATTGATCATGG
AATGTATTCAGCATGCGTTGCAATGCATGGACATTGTTATGGAATTTTTGGTTTATTTAC
CTTTCACCGTGGATTGACAAGGTCTCGATCATGTTAGTGTTGATGGCTTATAGTTCTCCA
GTAATGTTGTTGTTTTTCCTTTCGATGGCTTGTAAAAGTTTAGGTGTATCGGAATTTCGA
TCAACTTGCTCGTACGCTGGTAATT