Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0124500-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:1274555:1278717:1 gene:Os07g0124500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:eukaryotic translation initiation factor 3, subunit c, EUKARYOTIC INITIATION FACTOR 3C description:Similar to Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c). (Os07t0124500-01)
Sequence	ATGGCATCCCGTTTTTGGGGACAGGGAGACAGCGACTCCGAGGAGGAGGAGCAGGAGATT GAGTCAGAAGCAGGAAGTGAAAGCGAAGATGAAGGTGGTGATGCCGGGGGGCGTTCAAAC CAGAACCGCTATTTGAGGACCACCAACGCAAGCGACAGTGACGAGTCTGATTCTGGTCAG CGTGTGGTCCGCTCCTTGAAGGATAAGCGCAATGAGGAGTTGAAAATTACGGTTGATCAG ATGCGCAATGCAATGAAGATCAATGACTGGGTGAATTTACAAGAGAGTTTCGAGAAGCTC AACAAGCAGCTTGAGAAGGTGGTTCGTGTCAATGAATCCACCACAGTTCCAAATATGTAC GTCAAGGCTCTTGTATTACTGGAGGACTTCCTTGCTGAGGCCCTAGCAAACAAAGAGGCC AAGAAGAAGATGAGCAGCAGCAATGCAAAGGCACTCAATGCAATGAAACAGAAACTAAAG AAGAACAACAAGCAGTATGAGAACCTGATCCAAGAGTGCAGAGAGCATCCAGAGCGCTTT GAAGATGACGATGTGGAAGACAAGGATGACGATGATGAGACAGATGATGATGCTAGTGAT GCAGACATTGAGGATCCTGAAAAGATGGTTATGTCTGAATCAGAGGAGGAAGGAGATGAT GATGAGGAGGGTGACCAGGATGGTGGAGCCTGGGAAAAGAAGATAAGCAAGAAAGATAAG CTTATGGACAAGCAGTTTTTGAAAGATCCCAGTGAGATTACTTGGGATATTGTTGATAAA AAGCTCAAGGAGATTGTGGCGTCAAGGGGTAAAAAAGGCACAGGGAGGATTGAGCGTGTT GAGCAGCTAACCTTTTTGACCCGTGTGGCGAAAACACCTGCTCAGAAGCTTGAAATTCTC TTTCATGTGATTTCTGCCCAATTTGATGTCAACCCTAGCTTACTTGGTCACATGCCAGTC AACATGTGGAAGAAGTGTGTTAATAACATGCTTCTTGTGCTTGATATACTGCAACAGTAT CCCAATATTGTAGTAGACACCTCCGTGGAGCCTGATGAGAAGGAAACTCAGAAGGGTGCT GACTATGATGGACAAATCCATGTGACGGGTGACCTGGTTGCATTCCTGGAGAGATTGGAT TCTGAGTTTTTCAAAAGTTTGCAGTGCACTGATCCATACACGAAAGATTATGTTCAGAGG CTCAGGGATGAACCTTTGTTTTTGGTTGTTGCACAGAATGTCCAAGATTACCTGGAACGT GTCGGTAACTTTAAGGCTGAAGCTAAGGTTGCACTGCGTCGTGTTGAATTGGTCTACTAC AAACCTCAGGAGGTATATGATGCAATGAGAAAGCTTGCAGAGCAGGATGAAGATAGTAGG GAGGATGATGATGCAGACGCTGACGAGGAGCGTCAAGTAGTTGATGACAATAGGGGCCCT CCACCATTTGTTGTGATCCCTGAGGTCGTGCCTAGGAAGCCTACTTTCCCAGAGAGTGGC AGAGCTTTGATGGATGCGCTGATGTCTGTGATTTACAAATATGGTGATGAAAGGACCAAA GCCCGGGCAATGCTGTGTGACATTTATCACCATGCTATCTCTGATAAATTTTCTGTGGCA CGTGACTTGCTTTTAATGAGCCATTTACAAGACGGGGTTCAACTCATGGACATATCATCA CAGATTCTGTTCAACAGAGTCATGGCCCAGTTGGGGCTGTGTGCTTTTAGGGCTGGTTTG ATAATTGAAGCTCATGGTTGCTTGTCTGAGTTATATTCAACTGGGAGAGTGAAGGAGTTG CTTGCACAAGGTGTGCAACAAAGTCGATACCATGAAAAAACTCCTGAACAGGAAAGGCTT GAGAGGAGAAGGCAAATGCCTTACCATATGCATATAAACCTTGAACTTTTGGAAGCCACT CACTTGATTTGTGCCATGCTGATTGAGGTCCCCAATATGGCTGCCAGTACTTATGACAGG AGGAAGTCTATGAACAGAACATTCCGTAGGCTTCTTGAGATCAGTGAGAGGCAGACTTTT GTCGGGCCACCAGAAAATGTGAGGGACCATGTAATGGCTGCAACAAGAGCCCTCCGCAAG GGTGACTACCAGAAGGCTTTCGATGTCATTAATTCGCTGGAGATCTGGAAGCTTTTGAGG AACAAGGAGCATGTTCTTGAGATGCTGAAACTTAAGATCAAAGAAGAAGCTCTTAGAACC TATCTCTTGTCATACTCTTCTTGCTACGAGTCCCTGAGCCTTGACCAGCTCACTACAATG TTTGACCTTAGTGAGCAACAAGCTCATAGCATTGTTAGCAAGATGATGATGCATGAAGAG CTTCATGCCAGCTGGGATCAACCAACCAAGTGCATTATTTTCCACAATGTTGATCAAACT AGGCTTCAGGGACTACTCTTCCAGATGTCTGATAAGCTCTCTGTCCTTGTGGAGAGCAAT GAGAGGGCATATGAGGCCAAAACTGGTGGTACCCTTGAGGGAGCACCACCCAGGCGTAGG GGTGGTGATGGTCAGGACTCATCCAACTTGGGCAAGTGGCAGGAGAACTTCGTATCATCA CAAGGGCGGCAAGGCGGCGGGAGGTCTGGATACTCAGGCAGAGTTGGAGGCCCTGGAAGA GGTGGTGGTGGCTACCAGAGGGACAGGGGTAGTCAGGGTTCCCGTGGAGGCTATGGTGGT GGTTCGCGCTTCCAAGATGGGGGAAGGTCTCGCAACCAGTCTGGTTCTATGGCAAGAGGA GGTGATGGTGGTGCACGCATGGTGAGCCTGAACAGGTCTGGTAGAGGTTAG

Peptide Sequence

PEP ID	Os07t0124500-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:1274555:1278717:1 gene:Os07g0124500 transcript:Os07t0124500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:eukaryotic translation initiation factor 3, subunit c, EUKARYOTIC INITIATION FACTOR 3C description:Similar to Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c). (Os07t0124500-01)
Sequence	MASRFWGQGDSDSEEEEQEIESEAGSESEDEGGDAGGRSNQNRYLRTTNASDSDESDSGQ RVVRSLKDKRNEELKITVDQMRNAMKINDWVNLQESFEKLNKQLEKVVRVNESTTVPNMY VKALVLLEDFLAEALANKEAKKKMSSSNAKALNAMKQKLKKNNKQYENLIQECREHPERF EDDDVEDKDDDDETDDDASDADIEDPEKMVMSESEEEGDDDEEGDQDGGAWEKKISKKDK LMDKQFLKDPSEITWDIVDKKLKEIVASRGKKGTGRIERVEQLTFLTRVAKTPAQKLEIL FHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYPNIVVDTSVEPDEKETQKGA DYDGQIHVTGDLVAFLERLDSEFFKSLQCTDPYTKDYVQRLRDEPLFLVVAQNVQDYLER VGNFKAEAKVALRRVELVYYKPQEVYDAMRKLAEQDEDSREDDDADADEERQVVDDNRGP PPFVVIPEVVPRKPTFPESGRALMDALMSVIYKYGDERTKARAMLCDIYHHAISDKFSVA RDLLLMSHLQDGVQLMDISSQILFNRVMAQLGLCAFRAGLIIEAHGCLSELYSTGRVKEL LAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHLICAMLIEVPNMAASTYDR RKSMNRTFRRLLEISERQTFVGPPENVRDHVMAATRALRKGDYQKAFDVINSLEIWKLLR NKEHVLEMLKLKIKEEALRTYLLSYSSCYESLSLDQLTTMFDLSEQQAHSIVSKMMMHEE LHASWDQPTKCIIFHNVDQTRLQGLLFQMSDKLSVLVESNERAYEAKTGGTLEGAPPRRR GGDGQDSSNLGKWQENFVSSQGRQGGGRSGYSGRVGGPGRGGGGYQRDRGSQGSRGGYGG GSRFQDGGRSRNQSGSMARGGDGGARMVSLNRSGRG

Transcript Sequence

Transcript ID	Os07t0124500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:1274555:1278717:1 gene:Os07g0124500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:eukaryotic translation initiation factor 3, subunit c, EUKARYOTIC INITIATION FACTOR 3C description:Similar to Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c). (Os07t0124500-01)
Sequence	GCCCGGTAGTTCCACCTCCTCCCAGGAAGAAGGCGAGTTGACACCTCGCAAACCCTAAAC CATCTCCCCGCCGCCGCCGCCGCCGCCGCCGTCGACGTCGCTCTCTTCTCTCTCGCGCCG AGAGTTTAAAGCGAGCAGAAGGAAAAAGCCAAAGCAGCAGCCATGGCATCCCGTTTTTGG GGACAGGGAGACAGCGACTCCGAGGAGGAGGAGCAGGAGATTGAGTCAGAAGCAGGAAGT GAAAGCGAAGATGAAGGTGGTGATGCCGGGGGGCGTTCAAACCAGAACCGCTATTTGAGG ACCACCAACGCAAGCGACAGTGACGAGTCTGATTCTGGTCAGCGTGTGGTCCGCTCCTTG AAGGATAAGCGCAATGAGGAGTTGAAAATTACGGTTGATCAGATGCGCAATGCAATGAAG ATCAATGACTGGGTGAATTTACAAGAGAGTTTCGAGAAGCTCAACAAGCAGCTTGAGAAG GTGGTTCGTGTCAATGAATCCACCACAGTTCCAAATATGTACGTCAAGGCTCTTGTATTA CTGGAGGACTTCCTTGCTGAGGCCCTAGCAAACAAAGAGGCCAAGAAGAAGATGAGCAGC AGCAATGCAAAGGCACTCAATGCAATGAAACAGAAACTAAAGAAGAACAACAAGCAGTAT GAGAACCTGATCCAAGAGTGCAGAGAGCATCCAGAGCGCTTTGAAGATGACGATGTGGAA GACAAGGATGACGATGATGAGACAGATGATGATGCTAGTGATGCAGACATTGAGGATCCT GAAAAGATGGTTATGTCTGAATCAGAGGAGGAAGGAGATGATGATGAGGAGGGTGACCAG GATGGTGGAGCCTGGGAAAAGAAGATAAGCAAGAAAGATAAGCTTATGGACAAGCAGTTT TTGAAAGATCCCAGTGAGATTACTTGGGATATTGTTGATAAAAAGCTCAAGGAGATTGTG GCGTCAAGGGGTAAAAAAGGCACAGGGAGGATTGAGCGTGTTGAGCAGCTAACCTTTTTG ACCCGTGTGGCGAAAACACCTGCTCAGAAGCTTGAAATTCTCTTTCATGTGATTTCTGCC CAATTTGATGTCAACCCTAGCTTACTTGGTCACATGCCAGTCAACATGTGGAAGAAGTGT GTTAATAACATGCTTCTTGTGCTTGATATACTGCAACAGTATCCCAATATTGTAGTAGAC ACCTCCGTGGAGCCTGATGAGAAGGAAACTCAGAAGGGTGCTGACTATGATGGACAAATC CATGTGACGGGTGACCTGGTTGCATTCCTGGAGAGATTGGATTCTGAGTTTTTCAAAAGT TTGCAGTGCACTGATCCATACACGAAAGATTATGTTCAGAGGCTCAGGGATGAACCTTTG TTTTTGGTTGTTGCACAGAATGTCCAAGATTACCTGGAACGTGTCGGTAACTTTAAGGCT GAAGCTAAGGTTGCACTGCGTCGTGTTGAATTGGTCTACTACAAACCTCAGGAGGTATAT GATGCAATGAGAAAGCTTGCAGAGCAGGATGAAGATAGTAGGGAGGATGATGATGCAGAC GCTGACGAGGAGCGTCAAGTAGTTGATGACAATAGGGGCCCTCCACCATTTGTTGTGATC CCTGAGGTCGTGCCTAGGAAGCCTACTTTCCCAGAGAGTGGCAGAGCTTTGATGGATGCG CTGATGTCTGTGATTTACAAATATGGTGATGAAAGGACCAAAGCCCGGGCAATGCTGTGT GACATTTATCACCATGCTATCTCTGATAAATTTTCTGTGGCACGTGACTTGCTTTTAATG AGCCATTTACAAGACGGGGTTCAACTCATGGACATATCATCACAGATTCTGTTCAACAGA GTCATGGCCCAGTTGGGGCTGTGTGCTTTTAGGGCTGGTTTGATAATTGAAGCTCATGGT TGCTTGTCTGAGTTATATTCAACTGGGAGAGTGAAGGAGTTGCTTGCACAAGGTGTGCAA CAAAGTCGATACCATGAAAAAACTCCTGAACAGGAAAGGCTTGAGAGGAGAAGGCAAATG CCTTACCATATGCATATAAACCTTGAACTTTTGGAAGCCACTCACTTGATTTGTGCCATG CTGATTGAGGTCCCCAATATGGCTGCCAGTACTTATGACAGGAGGAAGTCTATGAACAGA ACATTCCGTAGGCTTCTTGAGATCAGTGAGAGGCAGACTTTTGTCGGGCCACCAGAAAAT GTGAGGGACCATGTAATGGCTGCAACAAGAGCCCTCCGCAAGGGTGACTACCAGAAGGCT TTCGATGTCATTAATTCGCTGGAGATCTGGAAGCTTTTGAGGAACAAGGAGCATGTTCTT GAGATGCTGAAACTTAAGATCAAAGAAGAAGCTCTTAGAACCTATCTCTTGTCATACTCT TCTTGCTACGAGTCCCTGAGCCTTGACCAGCTCACTACAATGTTTGACCTTAGTGAGCAA CAAGCTCATAGCATTGTTAGCAAGATGATGATGCATGAAGAGCTTCATGCCAGCTGGGAT CAACCAACCAAGTGCATTATTTTCCACAATGTTGATCAAACTAGGCTTCAGGGACTACTC TTCCAGATGTCTGATAAGCTCTCTGTCCTTGTGGAGAGCAATGAGAGGGCATATGAGGCC AAAACTGGTGGTACCCTTGAGGGAGCACCACCCAGGCGTAGGGGTGGTGATGGTCAGGAC TCATCCAACTTGGGCAAGTGGCAGGAGAACTTCGTATCATCACAAGGGCGGCAAGGCGGC GGGAGGTCTGGATACTCAGGCAGAGTTGGAGGCCCTGGAAGAGGTGGTGGTGGCTACCAG AGGGACAGGGGTAGTCAGGGTTCCCGTGGAGGCTATGGTGGTGGTTCGCGCTTCCAAGAT GGGGGAAGGTCTCGCAACCAGTCTGGTTCTATGGCAAGAGGAGGTGATGGTGGTGCACGC ATGGTGAGCCTGAACAGGTCTGGTAGAGGTTAGAGTAGTTCTCCAGGATAGTTCTCAGCG CAAAGTTTTGCAAGTTCTGAGTCACTGATCAAGTTTCTGGCATTTTGGAAGTCACATCTG TTCTGAAGCTATTCTTGATCTCTTAATTTCGTTACAGCTTACAGTTTAAATTTGTCGGAC ACTTGACAAAGAGCTCTCTGGTTTGTACCATGGGAGTGAGGACAGTATTCACTCCTACAT TTGATATAATGCTGGCACTATTTTCTACTCTC