Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0122400-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:1165824:1169480:1 gene:Os07g0122400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide region domain containing protein. (Os07t0122400-01)
Sequence

ATGGCCTCCTCGTCGGAGAACGTGGAGGCGCCGCGAGACGAGCAGCGCGACCCGCCGCCG
TCACCGCCGAACCCTAGCGAGGAGGCCGGGGCGGGCGAGGAGATGGAGGCGGAGGGGGAG
GGGGAGGAGGAGGTGAAAACCCTAGAGCGGGCGGAGGAGCTGTTCGAGAGGGGGTCCAAG
GCCATCGAGGAGGGGGACTTCGTCGACGCCGTCGACTGCCTCAGCCGCGCCCTCGAGATC
AGGGTTGCACATCATGGAGAACTTGCTCCGGAATGTGTTAGCACATATTTTAAGTATGGA
TGTGCCTTGCTATACAAAGCTCAGGATGAGGCTGATCCTTTGGGTAATGTTCCCAAGAGT
TCATCTAATAAGGAGTCCATGAAGAGTACTACTAACAAGGATGATAGTGGAAGCTCAAAG
ACCCCCGGTAGCAATACTGAGGATGCTCCATCCACGGATAAAGCTGATGCTGAAGAAGGG
CAAAACTCAACTGGAAAAGGTCAAGAGGAGGAAAACGGTGACAGTGACAAGGATGATGAT
GAGATGGTGGGAGATGAAGATGATTCTGATTTGGATCAGGCCTGGAAAATGTTGGATATT
GCAAGGGCTATAGTTGAGAAGAGCCCAGATGACACTTTGGAGAAAGCAAAAATCTTTTCT
GCTCTAGCTGAAGTCTCCATGGAAAGAGAGGACATTGATAACTCACTCGGTGACTACTTT
AAAGCTTTAGCCATATTGGAGAAATTGTTTGAGCCTGATCATCGTCGAATTATTGATCTA
AACTTCCGCATATGTTTGGTCTATGAGTTGGTGTCGAAGATTTCAGATGCAATTCCATAT
TGCGCTAAGGCTATTTCATTATGCAAGTCACGCATACAAAGCCTAAAAAATGACAAAGAT
GCTTTGTTGGCTGGTAAAGATGATAACGCATCAGCTGCTGATGGAGGCTCAGAAAAGTCC
GCTCCTGAGGGTGAGATAGAGCAGCTCAGTGGCATTTTGAGTGAACTTGAGAAGAAGCTG
GAAGACTTGGAACAAGCAATGTCTACCCCAAGCTCTGTTATGGATGAGATTATGAAGAGG
ATTGCCTCAAAGGCAGGTGGTGAACAGAATGCTACTGACACAATGCCAGCGGCTGCTTCT
TTCAATTCTTCTTCACAGATGGCTGGATCAAGCAACGGCTTTGATTCGTCAACTCTGTCT
ACGGCAGCTACAACCGGAAGTACTGGAAGCACTGTAACCGATCTTGGGGTTGTTGGTAGA
GGTATCAAACGTGCTAATATCAAGCCAATCTCTGCTGAACCTCCTCCCAAGAGAGCTGCA
GCTGATTCGCTCTCAGTAAAAGGTGATAGCAGCAACAACTCAGATGTTCATACCCCAGCA
CAAGAGGGCGATGATTCTGTATCAAAGTAA

Peptide Sequence

PEP ID

Os07t0122400-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:1165824:1169480:1 gene:Os07g0122400 transcript:Os07t0122400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide region domain containing protein. (Os07t0122400-01)
Sequence

MASSSENVEAPRDEQRDPPPSPPNPSEEAGAGEEMEAEGEGEEEVKTLERAEELFERGSK
AIEEGDFVDAVDCLSRALEIRVAHHGELAPECVSTYFKYGCALLYKAQDEADPLGNVPKS
SSNKESMKSTTNKDDSGSSKTPGSNTEDAPSTDKADAEEGQNSTGKGQEEENGDSDKDDD
EMVGDEDDSDLDQAWKMLDIARAIVEKSPDDTLEKAKIFSALAEVSMEREDIDNSLGDYF
KALAILEKLFEPDHRRIIDLNFRICLVYELVSKISDAIPYCAKAISLCKSRIQSLKNDKD
ALLAGKDDNASAADGGSEKSAPEGEIEQLSGILSELEKKLEDLEQAMSTPSSVMDEIMKR
IASKAGGEQNATDTMPAAASFNSSSQMAGSSNGFDSSTLSTAATTGSTGSTVTDLGVVGR
GIKRANIKPISAEPPPKRAAADSLSVKGDSSNNSDVHTPAQEGDDSVSK

Transcript Sequence

Transcript ID

Os07t0122400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:1165824:1169480:1 gene:Os07g0122400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide region domain containing protein. (Os07t0122400-01)
Sequence

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACTCGCTGCTTCCGCCGCCGCC
GCCGCCGCCGCCGCAGCCCATGGCCTCCTCGTCGGAGAACGTGGAGGCGCCGCGAGACGA
GCAGCGCGACCCGCCGCCGTCACCGCCGAACCCTAGCGAGGAGGCCGGGGCGGGCGAGGA
GATGGAGGCGGAGGGGGAGGGGGAGGAGGAGGTGAAAACCCTAGAGCGGGCGGAGGAGCT
GTTCGAGAGGGGGTCCAAGGCCATCGAGGAGGGGGACTTCGTCGACGCCGTCGACTGCCT
CAGCCGCGCCCTCGAGATCAGGGTTGCACATCATGGAGAACTTGCTCCGGAATGTGTTAG
CACATATTTTAAGTATGGATGTGCCTTGCTATACAAAGCTCAGGATGAGGCTGATCCTTT
GGGTAATGTTCCCAAGAGTTCATCTAATAAGGAGTCCATGAAGAGTACTACTAACAAGGA
TGATAGTGGAAGCTCAAAGACCCCCGGTAGCAATACTGAGGATGCTCCATCCACGGATAA
AGCTGATGCTGAAGAAGGGCAAAACTCAACTGGAAAAGGTCAAGAGGAGGAAAACGGTGA
CAGTGACAAGGATGATGATGAGATGGTGGGAGATGAAGATGATTCTGATTTGGATCAGGC
CTGGAAAATGTTGGATATTGCAAGGGCTATAGTTGAGAAGAGCCCAGATGACACTTTGGA
GAAAGCAAAAATCTTTTCTGCTCTAGCTGAAGTCTCCATGGAAAGAGAGGACATTGATAA
CTCACTCGGTGACTACTTTAAAGCTTTAGCCATATTGGAGAAATTGTTTGAGCCTGATCA
TCGTCGAATTATTGATCTAAACTTCCGCATATGTTTGGTCTATGAGTTGGTGTCGAAGAT
TTCAGATGCAATTCCATATTGCGCTAAGGCTATTTCATTATGCAAGTCACGCATACAAAG
CCTAAAAAATGACAAAGATGCTTTGTTGGCTGGTAAAGATGATAACGCATCAGCTGCTGA
TGGAGGCTCAGAAAAGTCCGCTCCTGAGGGTGAGATAGAGCAGCTCAGTGGCATTTTGAG
TGAACTTGAGAAGAAGCTGGAAGACTTGGAACAAGCAATGTCTACCCCAAGCTCTGTTAT
GGATGAGATTATGAAGAGGATTGCCTCAAAGGCAGGTGGTGAACAGAATGCTACTGACAC
AATGCCAGCGGCTGCTTCTTTCAATTCTTCTTCACAGATGGCTGGATCAAGCAACGGCTT
TGATTCGTCAACTCTGTCTACGGCAGCTACAACCGGAAGTACTGGAAGCACTGTAACCGA
TCTTGGGGTTGTTGGTAGAGGTATCAAACGTGCTAATATCAAGCCAATCTCTGCTGAACC
TCCTCCCAAGAGAGCTGCAGCTGATTCGCTCTCAGTAAAAGGTGATAGCAGCAACAACTC
AGATGTTCATACCCCAGCACAAGAGGGCGATGATTCTGTATCAAAGTAATGCATTTTACC
CTAGGTAGTAACTTAATGGAATCTATTCGGTGCCAAAATCCTGTCTTGCTTAATATGTAC
TGCTGCATGTCCATTTTCTCAGAAGAACTGCCAATAGGGATTGCATG