Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0108200-00
CDS Infomation	cds chromosome:IRGSP-1.0:7:440518:444836:-1 gene:Os07g0108200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to transparent testa 12 protein. (Os07t0108200-00)
Sequence	ATGGGTGGAGATGAGCGGGCAGTGGCTGCTCCGTTGCTGCAGCAGCAGCAAGACGGCGGC GGCGGCGACGGCGAGAGGAGGAGGAGGCGGTGGTGGTGGGGATGGTGGGACGGGGAGGAG GCGGCGGGGCAGCTGGCGTTCGCGGCGCCGATGGTGGCGACCAGCATGGCCTACTACGCC ATCCCGCTGGTCTCCGTCATGTACGCCGGCCGCCTCGGAGAGCTCGAGCTCGCCGGCGCC ACCCTCGGCAACTCCTGGGGCACCGTCACCGGAATCGCCCTCATGACTGGACTAAGCGGG TCTCTAGAGACGCTCTGCGGGCAAGGTTATGGTGCAAAAATGTACCACATGATGGGGGTG TACCTACAAGCATCCATCATCACATCGGCCTTCTTCTCGGTGCTCGTCTCCCTCCTCTGG TTTTACTCAGAGCCTGTCCTCATCTTCCTCCGCCAGGACCCTGAGGTCACGAGAACAGCA ACGCTGTTCCTGCGTTACTCCATCCCGGCTCAGTTTGCCTATGGCTTCATCCAGTGCACC CTCAGGTTCCTACAGACACAATCTGTGGTGACACCGCTGGTGGTGTTTGCACTCCTGCCA CTGGTGCTTCATTTCGGGATCACCCATGCGTTCGTGCACTACCTGGGGTTCGGCTATGCT GGGGCTGGTATGTCAACGTCAGTGTCGCTGTGGCTCTCCTTCCTCATGCTCGCTGCCTAT GTGTGCTTGTCAGAAAGGTTCAAGCACACCTGGGAGGGCTTCTCCACCGAGGCATTTCGC CATGTTCTACCTGGCCTAAAGCTGGCTATCCCCTCTGCAGTGATGGTGTGCTTTGAGTAC TGGGCGTTCGAGGTGCTGGTTTTAGTTGCTGGGCTGATGCCGAATTCTCATATGAGTACT TCTATCATTGCAATGTGTGAAAACACTGAAGCGATATCATACATGATCACCTATGGGTTT GCTGCTGCTATCAGCACAAGGGTGTCAAATGAGCTTGGAGCTGGTAACGTTGCGAAGGCG AAGAAGGCGCTTGCTGTGACGCTGGTGCTCTCCCTGCTGCTGGGAGTGGCATTTCTTCTG CTCCTAGGCCTTGGTCATGATCTCTGGGCAGGGCTGTTCAGCAAAAGTGATGCAGTTATA AGCGAATTCGCTTCGATGACTCCGTTGCTCATCGGGTCAGTGGTGCTGGACTCTACACAG GGAGTCTTGTCAGGGGTTTCAAGAGGCTGTGGTTGGCAGCACTTGGCAGCATGGACCAAC CTGGTGGCATTCTACATTGTTGGCTTACCACTTTCTATCCTCTTTGGATTTAAGCTTGGC CTTCAGACCAAGGGGCTGTGGCTGGGTCAGATATGTGGTCTCCTGTTGCAGAACGCCGTT CTACTCTTTATCACCCTCAGGACCAAATGGGAAAGATTAGAGCTGACAATGAACGGCAAA GAAGACGGTTTTGTCTGTTGA

Peptide Sequence

PEP ID	Os07t0108200-00
PEP Infomation	pep chromosome:IRGSP-1.0:7:440518:444836:-1 gene:Os07g0108200 transcript:Os07t0108200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to transparent testa 12 protein. (Os07t0108200-00)
Sequence	MGGDERAVAAPLLQQQQDGGGGDGERRRRRWWWGWWDGEEAAGQLAFAAPMVATSMAYYA IPLVSVMYAGRLGELELAGATLGNSWGTVTGIALMTGLSGSLETLCGQGYGAKMYHMMGV YLQASIITSAFFSVLVSLLWFYSEPVLIFLRQDPEVTRTATLFLRYSIPAQFAYGFIQCT LRFLQTQSVVTPLVVFALLPLVLHFGITHAFVHYLGFGYAGAGMSTSVSLWLSFLMLAAY VCLSERFKHTWEGFSTEAFRHVLPGLKLAIPSAVMVCFEYWAFEVLVLVAGLMPNSHMST SIIAMCENTEAISYMITYGFAAAISTRVSNELGAGNVAKAKKALAVTLVLSLLLGVAFLL LLGLGHDLWAGLFSKSDAVISEFASMTPLLIGSVVLDSTQGVLSGVSRGCGWQHLAAWTN LVAFYIVGLPLSILFGFKLGLQTKGLWLGQICGLLLQNAVLLFITLRTKWERLELTMNGK EDGFVC

Transcript Sequence

Transcript ID	Os07t0108200-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:440518:444836:-1 gene:Os07g0108200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to transparent testa 12 protein. (Os07t0108200-00)
Sequence	ATGGGTGGAGATGAGCGGGCAGTGGCTGCTCCGTTGCTGCAGCAGCAGCAAGACGGCGGC GGCGGCGACGGCGAGAGGAGGAGGAGGCGGTGGTGGTGGGGATGGTGGGACGGGGAGGAG GCGGCGGGGCAGCTGGCGTTCGCGGCGCCGATGGTGGCGACCAGCATGGCCTACTACGCC ATCCCGCTGGTCTCCGTCATGTACGCCGGCCGCCTCGGAGAGCTCGAGCTCGCCGGCGCC ACCCTCGGCAACTCCTGGGGCACCGTCACCGGAATCGCCCTCATGACTGGACTAAGCGGG TCTCTAGAGACGCTCTGCGGGCAAGGTTATGGTGCAAAAATGTACCACATGATGGGGGTG TACCTACAAGCATCCATCATCACATCGGCCTTCTTCTCGGTGCTCGTCTCCCTCCTCTGG TTTTACTCAGAGCCTGTCCTCATCTTCCTCCGCCAGGACCCTGAGGTCACGAGAACAGCA ACGCTGTTCCTGCGTTACTCCATCCCGGCTCAGTTTGCCTATGGCTTCATCCAGTGCACC CTCAGGTTCCTACAGACACAATCTGTGGTGACACCGCTGGTGGTGTTTGCACTCCTGCCA CTGGTGCTTCATTTCGGGATCACCCATGCGTTCGTGCACTACCTGGGGTTCGGCTATGCT GGGGCTGGTATGTCAACGTCAGTGTCGCTGTGGCTCTCCTTCCTCATGCTCGCTGCCTAT GTGTGCTTGTCAGAAAGGTTCAAGCACACCTGGGAGGGCTTCTCCACCGAGGCATTTCGC CATGTTCTACCTGGCCTAAAGCTGGCTATCCCCTCTGCAGTGATGGTGTGCTTTGAGTAC TGGGCGTTCGAGGTGCTGGTTTTAGTTGCTGGGCTGATGCCGAATTCTCATATGAGTACT TCTATCATTGCAATGTGTGAAAACACTGAAGCGATATCATACATGATCACCTATGGGTTT GCTGCTGCTATCAGCACAAGGGTGTCAAATGAGCTTGGAGCTGGTAACGTTGCGAAGGCG AAGAAGGCGCTTGCTGTGACGCTGGTGCTCTCCCTGCTGCTGGGAGTGGCATTTCTTCTG CTCCTAGGCCTTGGTCATGATCTCTGGGCAGGGCTGTTCAGCAAAAGTGATGCAGTTATA AGCGAATTCGCTTCGATGACTCCGTTGCTCATCGGGTCAGTGGTGCTGGACTCTACACAG GGAGTCTTGTCAGGGGTTTCAAGAGGCTGTGGTTGGCAGCACTTGGCAGCATGGACCAAC CTGGTGGCATTCTACATTGTTGGCTTACCACTTTCTATCCTCTTTGGATTTAAGCTTGGC CTTCAGACCAAGGGGCTGTGGCTGGGTCAGATATGTGGTCTCCTGTTGCAGAACGCCGTT CTACTCTTTATCACCCTCAGGACCAAATGGGAAAGATTAGAGCTGACAATGAACGGCAAA GAAGACGGTTTTGTCTGTTGA