Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0107900-02
CDS Infomation

cds chromosome:IRGSP-1.0:7:429005:431607:1 gene:Os07g0107900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os07t0107900-01);Conserved hypothetical protein. (Os07t0107900-02)
Sequence

ATGAAGAGCAAATCCTCCAGGAAGGCCGCCGACGAGGATGAGGCCAAGTCCAAGAAGCTC
CGATCCTCCCGCGGCAAGCAGCGGCCTAAGCAGCGCCGGCGAGGCCGCTGCAGCAGCACC
TCCTCCCGCTCTGAATCCCCACCCCGCAAGCGCTCCAAGAAGCTCAAGGTCTCTGACAAG
AAGAGCACCAAGAACAAGGGCCGCAGACGCCACCACAGTCTTAGCCCCAGCCCCAGCCCT
TCATCGTCGTCCGTGAGTTACTCAACGCGCAGCAGCAGCGGTGGCGGCGGCGGCGCTTCT
GAGAGGTCGGTGAGCCCACCGCGTAGGAGCCGCTCTAGAGATGTTAGGAAGAAGAAGAAG
GAGAGGGGGAGGGACAGCAAGAGGGTGAGGAGGTCAAGAAGATCTACAAGCTATTCAACC
AGTGGAGAGAGTAATTCCAGTAGTCGCAGCAGGAGTAGGAGCAATAATAGTAAGAGCAGG
AATCGCAAGTCCGGTGGCAATAAGGATCATGCAAGCAGGAATAAGATTGTGCAGGATTAT
GACAATGGCCATGCTCATCGGGCTGAGAATGTGAAATCTGTTGAGATTGCGGATAGGGAT
GAGAAAGCCATGGCTGATACCAGCAAGGGGAGCTCTATTGAGATATCTCACTCAATTATT
GATCATGAGAAGAATGAGTCCGTTGAGAAGATGGAGAGCGCTCCTACCAAGGATGCTGAT
GAAACACAAGACATCTTACCTGCTGGTAGTGGAAGCCCTGATGCTCAGGATCTGGAGCTG
ATTCTCAGGCAGAAAGCTCTTGAGAACTTCAGAAAATTTAGAGGAGCAGCGCTCATGGCA
GGCAAGCCGCAAACCAATGGTACAGGGAAGGAAGTGGTAACGGATAGCCCCAAGAGCAGT
GACACGAAAATTGCTGAAGCGAGTTCTGTTGACAAACCTTTTCAGAGGCAAAGAAGTGGT
CTTTCAGTGAACTGCTCTGTTGGATCCCCTAGATTGGAGGATTTCGGGAACCATATAACT
CCTCGAAAGCAGGAAAGCTCCGCTGGCAAGAGCGTTGGCGTTGAATCACCTGGAACATTT
GAGGCCGGCAGCACCAGCGGGCGAACTGAGCAGAAAGGAAGCAGTCTAGAACCTACTCGA
TCAAATTCACAGATTAGGCTACAGGATGGTAGGAGTAGTTCCAGCATAATGCATAGGTTG
GGAAGCCCTCCAAGGAGCTCTGCCAGCGTGATTCGAAGGTTAGGAAGCAGCGCAGGGGTG
AATTATGTGAATGGAAATCCCAGAGTTAGATCAGTTGTGAGCATACCCACTAAGGAAGGG
CTTGATAGTGGTACATCTATCACTACCCCTAGTGCTTGTGATAATTCTCCCCCTGTTGAA
AACATTAGTGAAGTCAGGCATCCTCCTATTGATACTAACAAAATTGAAGGAACTAAAGGG
GATGAAAGAAATTCAGGTGAAGCTTCAGCTCCTAATGTTTCTACTTTGTCAACTGGTGAG
GTCAAGGATCAGCCTGGGACTGAGGTCAAAGATGGTTCTCAGTTTGAGAAAAAGACATTC
TCTAGAATGCATGAGGGAGAAACTGTGCAGGTCAGTTACAAAGTCTACATACCAAAGAAA
AGTCCAGCACTTGCAAGGAGGAAGCTACAGCGCTGA

Peptide Sequence

PEP ID

Os07t0107900-02
PEP Infomation

pep chromosome:IRGSP-1.0:7:429005:431607:1 gene:Os07g0107900 transcript:Os07t0107900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os07t0107900-01);Conserved hypothetical protein. (Os07t0107900-02)
Sequence

MKSKSSRKAADEDEAKSKKLRSSRGKQRPKQRRRGRCSSTSSRSESPPRKRSKKLKVSDK
KSTKNKGRRRHHSLSPSPSPSSSSVSYSTRSSSGGGGGASERSVSPPRRSRSRDVRKKKK
ERGRDSKRVRRSRRSTSYSTSGESNSSSRSRSRSNNSKSRNRKSGGNKDHASRNKIVQDY
DNGHAHRAENVKSVEIADRDEKAMADTSKGSSIEISHSIIDHEKNESVEKMESAPTKDAD
ETQDILPAGSGSPDAQDLELILRQKALENFRKFRGAALMAGKPQTNGTGKEVVTDSPKSS
DTKIAEASSVDKPFQRQRSGLSVNCSVGSPRLEDFGNHITPRKQESSAGKSVGVESPGTF
EAGSTSGRTEQKGSSLEPTRSNSQIRLQDGRSSSSIMHRLGSPPRSSASVIRRLGSSAGV
NYVNGNPRVRSVVSIPTKEGLDSGTSITTPSACDNSPPVENISEVRHPPIDTNKIEGTKG
DERNSGEASAPNVSTLSTGEVKDQPGTEVKDGSQFEKKTFSRMHEGETVQVSYKVYIPKK
SPALARRKLQR

Transcript Sequence

Transcript ID

Os07t0107900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:429005:431607:1 gene:Os07g0107900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os07t0107900-01);Conserved hypothetical protein. (Os07t0107900-02)
Sequence

GAAGTTGTTCCCATCTGATCTGATCCATCATCCATCTCAATGTGCAGCAGCAGCAGAAGC
AGTGTATTATTCTGTTGTTAGGAGAGAAGTTCAGAGAAGTAGTAGTAGTCCCTATAAGAA
AGGGGAAAGAAAAAAAAAAGAAGAAACCCTATCCAAACAAAAACAAAGGGAAGAGAGAAG
AAAGTTGGAGACTTGGAGGAGGAACCCTCCACCACCAGCAAAGCCAATAGAGGGATCATC
CGCCGTAATCTATCTAGCCATCAATCCATCTCCCTCTCCTCCTCTGCTCTCCATGAAGAG
CAAATCCTCCAGGAAGGCCGCCGACGAGGATGAGGCCAAGTCCAAGAAGCTCCGATCCTC
CCGCGGCAAGCAGCGGCCTAAGCAGCGCCGGCGAGGCCGCTGCAGCAGCACCTCCTCCCG
CTCTGAATCCCCACCCCGCAAGCGCTCCAAGAAGCTCAAGGTCTCTGACAAGAAGAGCAC
CAAGAACAAGGGCCGCAGACGCCACCACAGTCTTAGCCCCAGCCCCAGCCCTTCATCGTC
GTCCGTGAGTTACTCAACGCGCAGCAGCAGCGGTGGCGGCGGCGGCGCTTCTGAGAGGTC
GGTGAGCCCACCGCGTAGGAGCCGCTCTAGAGATGTTAGGAAGAAGAAGAAGGAGAGGGG
GAGGGACAGCAAGAGGGTGAGGAGGTCAAGAAGATCTACAAGCTATTCAACCAGTGGAGA
GAGTAATTCCAGTAGTCGCAGCAGGAGTAGGAGCAATAATAGTAAGAGCAGGAATCGCAA
GTCCGGTGGCAATAAGGATCATGCAAGCAGGAATAAGATTGTGCAGGATTATGACAATGG
CCATGCTCATCGGGCTGAGAATGTGAAATCTGTTGAGATTGCGGATAGGGATGAGAAAGC
CATGGCTGATACCAGCAAGGGGAGCTCTATTGAGATATCTCACTCAATTATTGATCATGA
GAAGAATGAGTCCGTTGAGAAGATGGAGAGCGCTCCTACCAAGGATGCTGATGAAACACA
AGACATCTTACCTGCTGGTAGTGGAAGCCCTGATGCTCAGGATCTGGAGCTGATTCTCAG
GCAGAAAGCTCTTGAGAACTTCAGAAAATTTAGAGGAGCAGCGCTCATGGCAGGCAAGCC
GCAAACCAATGGTACAGGGAAGGAAGTGGTAACGGATAGCCCCAAGAGCAGTGACACGAA
AATTGCTGAAGCGAGTTCTGTTGACAAACCTTTTCAGAGGCAAAGAAGTGGTCTTTCAGT
GAACTGCTCTGTTGGATCCCCTAGATTGGAGGATTTCGGGAACCATATAACTCCTCGAAA
GCAGGAAAGCTCCGCTGGCAAGAGCGTTGGCGTTGAATCACCTGGAACATTTGAGGCCGG
CAGCACCAGCGGGCGAACTGAGCAGAAAGGAAGCAGTCTAGAACCTACTCGATCAAATTC
ACAGATTAGGCTACAGGATGGTAGGAGTAGTTCCAGCATAATGCATAGGTTGGGAAGCCC
TCCAAGGAGCTCTGCCAGCGTGATTCGAAGGTTAGGAAGCAGCGCAGGGGTGAATTATGT
GAATGGAAATCCCAGAGTTAGATCAGTTGTGAGCATACCCACTAAGGAAGGGCTTGATAG
TGGTACATCTATCACTACCCCTAGTGCTTGTGATAATTCTCCCCCTGTTGAAAACATTAG
TGAAGTCAGGCATCCTCCTATTGATACTAACAAAATTGAAGGAACTAAAGGGGATGAAAG
AAATTCAGGTGAAGCTTCAGCTCCTAATGTTTCTACTTTGTCAACTGGTGAGGTCAAGGA
TCAGCCTGGGACTGAGGTCAAAGATGGTTCTCAGTTTGAGAAAAAGACATTCTCTAGAAT
GCATGAGGGAGAAACTGTGCAGGTCAGTTACAAAGTCTACATACCAAAGAAAAGTCCAGC
ACTTGCAAGGAGGAAGCTACAGCGCTGAAGTTGCCAAGATTGTCACCAAATTCTCATTAT
TTGTCTTGTCTACACCTTAGTTATGTAGCTGGATATACTTTTACTCTCTGCTGCCATGTA
TTGACAATACATGCCTTCCGGAAATCATTCCCACATCAAAATTGCTCATATTTCAGTTTT
GATGCTCGATAGCTCAGATAGAAGCCTGGATAGTCAAAACATGTCATAGTTGTTTCTTTT
TTACTGCAAAATGAACATTTTGACTGTAACTCGCTCCGAATTCTGACACAGTGTATGGGC
AGCTACTGTTGTCATGGCCTGCAGTGAACTATTGCAATGAATTATTGGACAAATATCTGG
C