Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0102500-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:154906:158601:-1 gene:Os07g0102500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lupus La protein family protein. (Os07t0102500-01)
Sequence

ATGGCGACGGCGCAGCAGGAGAGCATCAGCAGCGGTGGTGACGGCAACAATAATAATAAT
AAGCAGGTGGCGGTGGTGGTTGTTGAGGAGGCGTCGACGCCGTCGTCGGCCTTCAAGTTC
AACGTGCACGCGCCGGAGTTCGTGCCTGCCATGTCGCCGACGGCCAGTCCGATGTCGGCG
CCCGCCGGCAGCAGCAGCTTCTACTCCCCCTTCGGGCTCCACGTGCAGCCCGATCACTGG
AGCTTCTTCCATGACCACGAGCCCGTCTTCTTCATGCCCGACTTCAAGTTCGCCGCCGCC
GCCGCCGCCAGCGCGCAGCCCAAGCCCACCTCCGCCGCCGACATGCCCCACAAGATCGTC
AAGCAGGTCGAGTACCAATTCAGCGACATTAACCTCGTCGCCAACGAGTTCTTGCTCAAG
ATCATGAACAAAGATTCTGAAGGTTACGTCCCCTTATCCGTGATTGCTTCTTGGAAGAAG
ATCAAGTCTCTTGGAGCAACCAATCAAATGCTGGTCAAGGCTCTTCGCACCTCCACCAAG
CTGATTGTGAGTGATGACGGCAAGAAAGTCCGGCGGAGGCAGCCATTCACGGAGAAGCAC
AAGGAGGAGCTTCAGTCAAGGATGATCATAGCTGAGAATTTGCCAGAGGACTCATCGAGA
AACAGCCTGGAGAAAATCTTCGGTGTCGTTGGAAGTGTGAAGAACATAAAGATGTGCCAC
CCTCAAGAGCCTAGCACGGCAAGAGCTTCCAAGTCAGACACTCTAGTCAGTAACAAGATG
CATGCACTGGTGGAGTACGAGAGCTCGCAGCAAGCTGAGAAAGCAGTGGAGAAGCTGAAC
GACGAACGGAACTGGAGGAAAGGCCTTCGGGTGCGCACCGTCCTCAGGCGATCGCCCAAG
TCGGTGATGAGGCTGAAGCGGACGGAGTTCGACCTCAACTCGGACGACGAGCAGTCACCG
ATGTCGTCGGACTTATCCCCCACGGCGACGGCGACGGCGGCGGAGTTGTCGGCGGAGGCG
GCGGGTCACGATCAGGGCGGGGAGCAGCAGATGATGAACAGCAGCAAGAAAGGAGGAGGG
TGGGCGCGAGGGGGCCGAGGGAAGCTGCAGGTGGCGGCGCCGCACAGCCCGCAGTCGGCC
CCCGCCGGCAGTGTGGGGCACTTCGAGCCGGCGAGCCCTCGTCACAAGCTGCCGGCGAGC
CCCCGCCACAAGTGCCCCTCCAGCCCACGCCAGCCGCCTCCTCACGCCCACGGCCCCAGG
ATGCCCGACGGCACCCGCGGCTTCACCATGGGCCGCGGCAAGCCCCTCCTTGTCTAG

Peptide Sequence

PEP ID

Os07t0102500-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:154906:158601:-1 gene:Os07g0102500 transcript:Os07t0102500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lupus La protein family protein. (Os07t0102500-01)
Sequence

MATAQQESISSGGDGNNNNNKQVAVVVVEEASTPSSAFKFNVHAPEFVPAMSPTASPMSA
PAGSSSFYSPFGLHVQPDHWSFFHDHEPVFFMPDFKFAAAAAASAQPKPTSAADMPHKIV
KQVEYQFSDINLVANEFLLKIMNKDSEGYVPLSVIASWKKIKSLGATNQMLVKALRTSTK
LIVSDDGKKVRRRQPFTEKHKEELQSRMIIAENLPEDSSRNSLEKIFGVVGSVKNIKMCH
PQEPSTARASKSDTLVSNKMHALVEYESSQQAEKAVEKLNDERNWRKGLRVRTVLRRSPK
SVMRLKRTEFDLNSDDEQSPMSSDLSPTATATAAELSAEAAGHDQGGEQQMMNSSKKGGG
WARGGRGKLQVAAPHSPQSAPAGSVGHFEPASPRHKLPASPRHKCPSSPRQPPPHAHGPR
MPDGTRGFTMGRGKPLLV

Transcript Sequence

Transcript ID

Os07t0102500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:154906:158601:-1 gene:Os07g0102500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lupus La protein family protein. (Os07t0102500-01)
Sequence

AGTCGCTTCGCTAGCTATCGATCGATCGGTCGATCCAAGCTGCAGACACAATATTAATTC
AATTCAATTGAATTCTTCGATCATCCATGGCGACGGCGCAGCAGGAGAGCATCAGCAGCG
GTGGTGACGGCAACAATAATAATAATAAGCAGGTGGCGGTGGTGGTTGTTGAGGAGGCGT
CGACGCCGTCGTCGGCCTTCAAGTTCAACGTGCACGCGCCGGAGTTCGTGCCTGCCATGT
CGCCGACGGCCAGTCCGATGTCGGCGCCCGCCGGCAGCAGCAGCTTCTACTCCCCCTTCG
GGCTCCACGTGCAGCCCGATCACTGGAGCTTCTTCCATGACCACGAGCCCGTCTTCTTCA
TGCCCGACTTCAAGTTCGCCGCCGCCGCCGCCGCCAGCGCGCAGCCCAAGCCCACCTCCG
CCGCCGACATGCCCCACAAGATCGTCAAGCAGGTCGAGTACCAATTCAGCGACATTAACC
TCGTCGCCAACGAGTTCTTGCTCAAGATCATGAACAAAGATTCTGAAGGTTACGTCCCCT
TATCCGTGATTGCTTCTTGGAAGAAGATCAAGTCTCTTGGAGCAACCAATCAAATGCTGG
TCAAGGCTCTTCGCACCTCCACCAAGCTGATTGTGAGTGATGACGGCAAGAAAGTCCGGC
GGAGGCAGCCATTCACGGAGAAGCACAAGGAGGAGCTTCAGTCAAGGATGATCATAGCTG
AGAATTTGCCAGAGGACTCATCGAGAAACAGCCTGGAGAAAATCTTCGGTGTCGTTGGAA
GTGTGAAGAACATAAAGATGTGCCACCCTCAAGAGCCTAGCACGGCAAGAGCTTCCAAGT
CAGACACTCTAGTCAGTAACAAGATGCATGCACTGGTGGAGTACGAGAGCTCGCAGCAAG
CTGAGAAAGCAGTGGAGAAGCTGAACGACGAACGGAACTGGAGGAAAGGCCTTCGGGTGC
GCACCGTCCTCAGGCGATCGCCCAAGTCGGTGATGAGGCTGAAGCGGACGGAGTTCGACC
TCAACTCGGACGACGAGCAGTCACCGATGTCGTCGGACTTATCCCCCACGGCGACGGCGA
CGGCGGCGGAGTTGTCGGCGGAGGCGGCGGGTCACGATCAGGGCGGGGAGCAGCAGATGA
TGAACAGCAGCAAGAAAGGAGGAGGGTGGGCGCGAGGGGGCCGAGGGAAGCTGCAGGTGG
CGGCGCCGCACAGCCCGCAGTCGGCCCCCGCCGGCAGTGTGGGGCACTTCGAGCCGGCGA
GCCCTCGTCACAAGCTGCCGGCGAGCCCCCGCCACAAGTGCCCCTCCAGCCCACGCCAGC
CGCCTCCTCACGCCCACGGCCCCAGGATGCCCGACGGCACCCGCGGCTTCACCATGGGCC
GCGGCAAGCCCCTCCTTGTCTAGCTCCGATCCAGTCACATCACATCTCTACGTGTACGAT
TGCATACATGCCATGGATACTTCAGGCCCTCGATCGATCTTCTCTCCTTTCATTTTCTCC
TCTTCTCTTCTCTTCTTCTTCTTCTTCTTTCTTTATTTTTTGGATTTTCACACCCCTTAA
ATAAAGAGCAACGGACTGGCTGTCTGCTATATCATATTCAAATACTTCAAGGTTAT