Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0731800-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:31208435:31211392:-1 gene:Os06g0731800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clathrin light chain family protein. (Os06t0731800-01)
Sequence

ATGGCCACCGCCTTTGACTCCCCGACCGCCTCGCCCGCCGCCTCTCCCTTCGACGACGAC
TCCTTCCTCCGCTTCGACGCCGCCGCGCCCGCTCCCGCGCCAGCGGACGCCTTCCCGCCA
TCACCGGAGCCCTACGCCTTCCGCCCCGACGCGCCCTCCCCCTTCGGTATGCCCGAGGCC
AACGGCTCCCTCCACGACGACCCCTTCGCCGCCCCCGACAACGACAACGGACCCGTGCTC
CCTCCGCCCAACCAGATGGGCGCTGACGAGGGCTTCCTGCTGCGCGAGTGGCGCCGTCAA
AATGCAATCCTTCTGGAGGAAAAGGAGAAGAAGGAAAAGGAGATGAGGAATCAAATCATC
CTTGATGCCAAAGAATTCAAGAAGGCATTTGTTGAGAAGCGAAAGCTGAACGTTGAGACA
AGCAAGGATCAAAACCGAGAAAGGGAGAAGCTTTACCTGGCCAATCAGGAGAAGTTCCAT
GCTGGCGCAGACAAGCAGTACTGGAAGGCGATATCAGAACTGATCCCACATGAGATTGCA
AACATTGAGAAGAGAGGAGCAAAGAAAGACAAGGATAAGGAGAAAAAGCCTGGGATTGTT
GTGATCCAGGGCCCAAAGCCTGGGAAGCCCACTGACATGTCACGGATGCGTCAGATATTG
CTGAAGCTGAAGCACACTCCCCCTCCACATATGAAGCCACCTCCCCCTCCCGCTGCAGCC
ACCGGTAAGGATGGTGCTGCAGGAAAGGATGGAGCCAAGGTAGCTGCGGCAGCTAGCAAG
GACGCCTCTGCCAATGGCAGTGTTCCAGAGATGGAGAAGGCCGCTGCTGCAGCAGCACCT
GCAGCAGCAGCAACTGAACCCATTGCTGCTGCCTGA

Peptide Sequence

PEP ID

Os06t0731800-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:31208435:31211392:-1 gene:Os06g0731800 transcript:Os06t0731800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clathrin light chain family protein. (Os06t0731800-01)
Sequence

MATAFDSPTASPAASPFDDDSFLRFDAAAPAPAPADAFPPSPEPYAFRPDAPSPFGMPEA
NGSLHDDPFAAPDNDNGPVLPPPNQMGADEGFLLREWRRQNAILLEEKEKKEKEMRNQII
LDAKEFKKAFVEKRKLNVETSKDQNREREKLYLANQEKFHAGADKQYWKAISELIPHEIA
NIEKRGAKKDKDKEKKPGIVVIQGPKPGKPTDMSRMRQILLKLKHTPPPHMKPPPPPAAA
TGKDGAAGKDGAKVAAAASKDASANGSVPEMEKAAAAAAPAAAATEPIAAA

Transcript Sequence

Transcript ID

Os06t0731800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:31208435:31211392:-1 gene:Os06g0731800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clathrin light chain family protein. (Os06t0731800-01)
Sequence

CTTCCTTCCTTCTCCGCTGGATCGGATTCAGATCGGCACCCACCACCACCACCTTCCTTC
CTTCTTCTCTCTTTCTCAGTCTCAGATCAGAATTATCAGATCCCGAGGGAGGGAGGAAGG
GAGGCCATGGCCACCGCCTTTGACTCCCCGACCGCCTCGCCCGCCGCCTCTCCCTTCGAC
GACGACTCCTTCCTCCGCTTCGACGCCGCCGCGCCCGCTCCCGCGCCAGCGGACGCCTTC
CCGCCATCACCGGAGCCCTACGCCTTCCGCCCCGACGCGCCCTCCCCCTTCGGTATGCCC
GAGGCCAACGGCTCCCTCCACGACGACCCCTTCGCCGCCCCCGACAACGACAACGGACCC
GTGCTCCCTCCGCCCAACCAGATGGGCGCTGACGAGGGCTTCCTGCTGCGCGAGTGGCGC
CGTCAAAATGCAATCCTTCTGGAGGAAAAGGAGAAGAAGGAAAAGGAGATGAGGAATCAA
ATCATCCTTGATGCCAAAGAATTCAAGAAGGCATTTGTTGAGAAGCGAAAGCTGAACGTT
GAGACAAGCAAGGATCAAAACCGAGAAAGGGAGAAGCTTTACCTGGCCAATCAGGAGAAG
TTCCATGCTGGCGCAGACAAGCAGTACTGGAAGGCGATATCAGAACTGATCCCACATGAG
ATTGCAAACATTGAGAAGAGAGGAGCAAAGAAAGACAAGGATAAGGAGAAAAAGCCTGGG
ATTGTTGTGATCCAGGGCCCAAAGCCTGGGAAGCCCACTGACATGTCACGGATGCGTCAG
ATATTGCTGAAGCTGAAGCACACTCCCCCTCCACATATGAAGCCACCTCCCCCTCCCGCT
GCAGCCACCGGTAAGGATGGTGCTGCAGGAAAGGATGGAGCCAAGGTAGCTGCGGCAGCT
AGCAAGGACGCCTCTGCCAATGGCAGTGTTCCAGAGATGGAGAAGGCCGCTGCTGCAGCA
GCACCTGCAGCAGCAGCAACTGAACCCATTGCTGCTGCCTGAGTGATAACGGCTTGGCTC
AGCTGCTAATGGTTTCCTGTAGGACACAGAGGAGAAGGCAGAGTGTCTGGCACGGATGTG
CGCCACGTATGGTGTAGCGTTGTTTTTGTTAAGAAAGTGTTGTGTTGTGTTGGGACCTTG
ATTCGTTGCTACATATATTGTTATTGCATTTTGTAGAGAAAAGATGAGAGGGGATATATC
CTGGCAATAATAAGTTAAATCTGTTGTATTAGGATGTGCGTGATTGTGTGATGTTGTGAC
GGTGGTTGTACTATTTTCCAGGTTGTCGGATTTTGGTAAAC