Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0727000-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:30935754:30936612:-1 gene:Os06g0727000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os06t0727000-01)
Sequence

ATGGCCGGTCAGGTGTTCGTCCATCACCTCGGCGGCGGCTCCGGCGGCGACGACCCCACC
CACCCATGGCTGTCCCTCAAGTCGTCCCATGAGATGGACGACGCCGTGGCGAGCTGGCGC
GAGAAGCTGGCGGACATGGCCGCCGCCGACGAACGCGCCGGCAGGTACCCGTGCCCGCTG
TGCGACCGCCACTTCCCCACGGAGAAGGCCGTGCACGGGCACATGCGCAGCCACCCGGGG
CGCGGCTGGCGCGGCATGGAGCCGCCCCGCGAGCCGTCCCCCGGCGACCTCGCCCTCGCC
GCCGACGGGAAGCGGTACCGCTACGTGTGCGACCGATGCAAGGCGCCGTTCGAGACGCGG
CAGGCGCTGGGTGGGCACCGTGCCAGCCACAGCACCAAGAAGGGCTGCTCCTGGCACGCC
AAGCAGCTCGCCATGGCCAAGCCGCCCAAGAACGACTTCGACCTCAACCATCTCTCACTT
GAGGCCATCCAGGCGGCGGCGCAAGAGGAACAAGCTGCTCAAGAGGGGAACAAGGATGAG
GAGCCTAAGAATTAA

Peptide Sequence

PEP ID

Os06t0727000-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:30935754:30936612:-1 gene:Os06g0727000 transcript:Os06t0727000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os06t0727000-01)
Sequence

MAGQVFVHHLGGGSGGDDPTHPWLSLKSSHEMDDAVASWREKLADMAAADERAGRYPCPL
CDRHFPTEKAVHGHMRSHPGRGWRGMEPPREPSPGDLALAADGKRYRYVCDRCKAPFETR
QALGGHRASHSTKKGCSWHAKQLAMAKPPKNDFDLNHLSLEAIQAAAQEEQAAQEGNKDE
EPKN

Transcript Sequence

Transcript ID

Os06t0727000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:30935754:30936612:-1 gene:Os06g0727000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os06t0727000-01)
Sequence

ATCCATCAGGTCTTCCACATACATTTTGCTGTCTCGCCACCGGAGACAGGTAGTATAGCT
ATGGCCGGTCAGGTGTTCGTCCATCACCTCGGCGGCGGCTCCGGCGGCGACGACCCCACC
CACCCATGGCTGTCCCTCAAGTCGTCCCATGAGATGGACGACGCCGTGGCGAGCTGGCGC
GAGAAGCTGGCGGACATGGCCGCCGCCGACGAACGCGCCGGCAGGTACCCGTGCCCGCTG
TGCGACCGCCACTTCCCCACGGAGAAGGCCGTGCACGGGCACATGCGCAGCCACCCGGGG
CGCGGCTGGCGCGGCATGGAGCCGCCCCGCGAGCCGTCCCCCGGCGACCTCGCCCTCGCC
GCCGACGGGAAGCGGTACCGCTACGTGTGCGACCGATGCAAGGCGCCGTTCGAGACGCGG
CAGGCGCTGGGTGGGCACCGTGCCAGCCACAGCACCAAGAAGGGCTGCTCCTGGCACGCC
AAGCAGCTCGCCATGGCCAAGCCGCCCAAGAACGACTTCGACCTCAACCATCTCTCACTT
GAGGCCATCCAGGCGGCGGCGCAAGAGGAACAAGCTGCTCAAGAGGGGAACAAGGATGAG
GAGCCTAAGAATTAATTAATTAGGAATAATTGAACTTGCTTAGGGTTCGTTCGGTCGGTC
GATCGATCGACTTCTTGTGCTTGCGTTGCGTCGGTCTGGGCTTGTGTTGGTTCGTAGCTA
GCCAACTCCATGGCTCATGCAGCATATGCACATATGTCTCTTTCTCTTCTTTTTCTTTTT
TAGTTTTTGTTTCTCTTTGATTTTTTGTAAGCTCGATCGATCGACAAGAAAAATAAACAA
ATATTGCAACCTGGATGAT