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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0718100-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:30520195:30521345:1 gene:Os06g0718100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 29 description:Similar to Alpha-expansin precursor. (Os06t0718100-01)
Sequence

ATGGCGCGCCGTGGCCATGTGTTCGCCGTGGTGGCGTTCGTCAGCTACGCGCTGCTCGCC
GCCGCCTCGACGACGGTGGAGGCGTTCGCGGCGTCGGGCTGGAGCAAGGGCACCGCCACC
TTCTACGGCGGCAGCGACGCCTCCGGCACCATGGGCGGTGCGTGCGGGTACGGCAACCTG
TACACGCAAGGGTACGGGACGCGGACGGCGGCGCTGAGCACGGCGCTGTTCGACGACGGC
GCGTCGTGCGGGCAGTGCTACGCGCTGACCTGCGACGCGAGGGCGGACCCGCGGTGGTGC
CGCGCGGGGGCGTCGGTGACGGTGACGGCCACCAACTTCTGCCCGCCCAACTACGCGCTC
CCCAGCGACGACGGCGGCTGGTGCAACCCGCCGCGGCCGCACTTCGACATGGCGCAGCCG
GCGTGGGAGCGGATCGGCGTGTACCGGGGCGGCATCGTGCCGGTGGCGTTCCGCCGCGTG
CCGTGCCGGAGGCGCGGCGGCGTGCGGTTCACGGTGGCCGGGCGGGACTACTTCGAGCTG
GTGCTGGTGACGAACGTGGCGGCGGCTGGGTCGGTGAGGTCGATGGAGGTGAGGGGCAGC
CGCCGTGGCGCCGGGTGGATGGCCATGTCGCGCAACTGGGGCGCCAACTGGCAGTCGCTG
GCGTACCTCGACGGGCAGGGCCTCTCGTTCCGGGTCACCGCCACCGACGGCCAGACCATC
GTCTTCGCCGGCGTCGTGCCGCCGTCGTGGAGGTTCGGCCAGACGTTCGCGAGCACCCAG
CAGTTCATGTAG

Peptide Sequence

PEP ID

Os06t0718100-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:30520195:30521345:1 gene:Os06g0718100 transcript:Os06t0718100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 29 description:Similar to Alpha-expansin precursor. (Os06t0718100-01)
Sequence

MARRGHVFAVVAFVSYALLAAASTTVEAFAASGWSKGTATFYGGSDASGTMGGACGYGNL
YTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYAL
PSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFEL
VLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTI
VFAGVVPPSWRFGQTFASTQQFM

Transcript Sequence

Transcript ID

Os06t0718100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:30520195:30521345:1 gene:Os06g0718100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 29 description:Similar to Alpha-expansin precursor. (Os06t0718100-01)
Sequence

CACCATAGTAGCTAAGCTAGCACAGGTTGCAACGAGCAGAGAGCTAGGCGAAATCGATCG
GAATTCGGAGATGGCGCGCCGTGGCCATGTGTTCGCCGTGGTGGCGTTCGTCAGCTACGC
GCTGCTCGCCGCCGCCTCGACGACGGTGGAGGCGTTCGCGGCGTCGGGCTGGAGCAAGGG
CACCGCCACCTTCTACGGCGGCAGCGACGCCTCCGGCACCATGGGCGGTGCGTGCGGGTA
CGGCAACCTGTACACGCAAGGGTACGGGACGCGGACGGCGGCGCTGAGCACGGCGCTGTT
CGACGACGGCGCGTCGTGCGGGCAGTGCTACGCGCTGACCTGCGACGCGAGGGCGGACCC
GCGGTGGTGCCGCGCGGGGGCGTCGGTGACGGTGACGGCCACCAACTTCTGCCCGCCCAA
CTACGCGCTCCCCAGCGACGACGGCGGCTGGTGCAACCCGCCGCGGCCGCACTTCGACAT
GGCGCAGCCGGCGTGGGAGCGGATCGGCGTGTACCGGGGCGGCATCGTGCCGGTGGCGTT
CCGCCGCGTGCCGTGCCGGAGGCGCGGCGGCGTGCGGTTCACGGTGGCCGGGCGGGACTA
CTTCGAGCTGGTGCTGGTGACGAACGTGGCGGCGGCTGGGTCGGTGAGGTCGATGGAGGT
GAGGGGCAGCCGCCGTGGCGCCGGGTGGATGGCCATGTCGCGCAACTGGGGCGCCAACTG
GCAGTCGCTGGCGTACCTCGACGGGCAGGGCCTCTCGTTCCGGGTCACCGCCACCGACGG
CCAGACCATCGTCTTCGCCGGCGTCGTGCCGCCGTCGTGGAGGTTCGGCCAGACGTTCGC
GAGCACCCAGCAGTTCATGTAGCTAGTCTCACTCTCGCTCGGGTTCCCTTTGGTTGGCAC
TTGGCAGTGGCGTTGTTTGCTATACTTTGCTCTCTTCTGTTGGTGTTTAATTAGCAGCCC
GCCAACGATTTGTGCTATGTAATCGTGTTAATTTGACAGTTTTTGTGGTGTATTGAGAAG
ACTTGTCCACGTATCAATCTAGCACAAATTGCTTTGCAAAGTAACC