Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0717900-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:30509418:30512236:1 gene:Os06g0717900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase A1 domain containing protein. (Os06t0717900-01);Similar to aspartic-type endopeptidase/ pepsin A. (Os06t0717900-02)
Sequence

ATGCCTCACTCCTCCTACCTCGCCCTCGCCCTCGCCGTTGCGGCGGTTCTTGCTATGGCC
GCCGTCGAGGTGTCCGGCCTCGGCTTCGACCTCCACCACCGCTACTCCCCCATCGTCCAG
CGGTGGGCGGAGGAGCGTGGCCACGCTGGCGTGTCCTGGCCTGCCGGCGCCGAGGTGATC
GGCTCGCCCGAGTACTACTCCGCGCTGTCCCGACACGACCACGCCCTCTTCGCGCGACGC
GGGCTCGCCCAGGGCGACGGCCTCGTCACCTTCGCCGACGGCAACATCACCCTGCGGCTC
GACGGATCGCTGCACTACGCGGAGGTGGCGGTGGGCACGCCGAACACGACGTTCCTGGTG
GCGCTCGACACCGGCAGCGACCTCTTCTGGGTGCCCTGCGACTGCAAGCAGTGCGCTCCC
CTCGGCAACCTCACGGCGGTGGACGGCGGCGGCGGCCCGGAGCTCAGGCAGTACAGCCCG
AGCAAGTCGTCGACGAGCAAGACGGTCACCTGCGCCAGCAACCTCTGCGACCAGCCCAAC
GCCTGCGCCACGGCCACCAGCAGCTGCCCCTACGCCGTCCGCTACGCCATGGCCAACACC
TCCTCCTCCGGCGAGCTCGTCGAGGACGTGCTCTACCTCACCAGGGAGAAGGGCGCCGCC
GCCGCCGCCGCCGGAGCCGCCGTGCGAACTCCCGTGGTGTTCGGGTGCGGGCAGGTGCAG
ACGGGCTCGTTCCTCGACGGCGCCGCCGCCGACGGCCTCATGGGTCTCGGCATGGAGAAG
GTGTCCGTGCCCAGCATCCTCGCCAGCACCGGCGTCGTCAAGTCGAACAGCTTCTCCATG
TGCTTCAGCAAAGACGGCCTCGGCCGGATCAACTTCGGCGACACCGGCAGCGCCGACCAG
TCCGAGACGCCGTTCATCGTCAAATCCACACACTCCTACTACAACATCAGCATCACGTCG
ATGAGCGTCGGGGACAAGAACTTGCCGTTGGGGTTCTACGCCATTGCTGACTCCGGCACG
TCCTTCACCTACCTCAACGACCCGGCCTACACGGCCTACACCACCAATTTCAACGCGCAG
ATCAGCGAGAGGAGGGCCAACTTCAGCGGCAGTACTCGTTCTGGTCCATTTCCTTTCGAG
TACTGCTACTCGTTGAGTCCTGATCAAACAACGGTGGAACTGCCTGTTGTGAGCCTGACG
ACCAATGGAGGAGCCGTGTTCCCGGTGACCAGCCCTGTTTACCCCATCGCGGCTCAGATG
ACAAACGGAGAGATTCGTATCATTGGTTACTGCCTGGCTGTCATCAAGAGCGATCTCCCC
ATCGACATCATTGGCCAGAACTTCATGACCGGGCTCAAGGTCGTCTTCAACCGTGAGAAA
TCCGTCCTGGGCTGGCAAAAGTTCGACTGTTACAAGGACGAGAAGATGACAGACGACGGG
TCGAGCGTCGGGAGCCCGAGCCCATCGCCGGGGCCGACCACTCACGTCTTCCCGCAGCCG
CAGGAGAGCGACTCGCCGGCGGGCAGAACGCCCATCCCCGGCGCGGCGCCGGTGCCGCGG
TCGAGCAGCGCGGCAGCTGGCGGCCGTGCAGGCTTCCGGCTCCTGTCGTCCATGGCGCTC
TTGCTGCTGGCTGCTGCTGCTGCAGCTGTTTTCTGA

Peptide Sequence

PEP ID

Os06t0717900-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:30509418:30512236:1 gene:Os06g0717900 transcript:Os06t0717900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase A1 domain containing protein. (Os06t0717900-01);Similar to aspartic-type endopeptidase/ pepsin A. (Os06t0717900-02)
Sequence

MPHSSYLALALAVAAVLAMAAVEVSGLGFDLHHRYSPIVQRWAEERGHAGVSWPAGAEVI
GSPEYYSALSRHDHALFARRGLAQGDGLVTFADGNITLRLDGSLHYAEVAVGTPNTTFLV
ALDTGSDLFWVPCDCKQCAPLGNLTAVDGGGGPELRQYSPSKSSTSKTVTCASNLCDQPN
ACATATSSCPYAVRYAMANTSSSGELVEDVLYLTREKGAAAAAAGAAVRTPVVFGCGQVQ
TGSFLDGAAADGLMGLGMEKVSVPSILASTGVVKSNSFSMCFSKDGLGRINFGDTGSADQ
SETPFIVKSTHSYYNISITSMSVGDKNLPLGFYAIADSGTSFTYLNDPAYTAYTTNFNAQ
ISERRANFSGSTRSGPFPFEYCYSLSPDQTTVELPVVSLTTNGGAVFPVTSPVYPIAAQM
TNGEIRIIGYCLAVIKSDLPIDIIGQNFMTGLKVVFNREKSVLGWQKFDCYKDEKMTDDG
SSVGSPSPSPGPTTHVFPQPQESDSPAGRTPIPGAAPVPRSSSAAAGGRAGFRLLSSMAL
LLLAAAAAAVF

Transcript Sequence

Transcript ID

Os06t0717900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:30509418:30512236:1 gene:Os06g0717900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase A1 domain containing protein. (Os06t0717900-01);Similar to aspartic-type endopeptidase/ pepsin A. (Os06t0717900-02)
Sequence

ATCTTGCTGCCCCCGCGCGCACGCCACCTCGCCCCGTCCCCACCCCACCATGCCTCACTC
CTCCTACCTCGCCCTCGCCCTCGCCGTTGCGGCGGTTCTTGCTATGGCCGCCGTCGAGGT
GTCCGGCCTCGGCTTCGACCTCCACCACCGCTACTCCCCCATCGTCCAGCGGTGGGCGGA
GGAGCGTGGCCACGCTGGCGTGTCCTGGCCTGCCGGCGCCGAGGTGATCGGCTCGCCCGA
GTACTACTCCGCGCTGTCCCGACACGACCACGCCCTCTTCGCGCGACGCGGGCTCGCCCA
GGGCGACGGCCTCGTCACCTTCGCCGACGGCAACATCACCCTGCGGCTCGACGGATCGCT
GCACTACGCGGAGGTGGCGGTGGGCACGCCGAACACGACGTTCCTGGTGGCGCTCGACAC
CGGCAGCGACCTCTTCTGGGTGCCCTGCGACTGCAAGCAGTGCGCTCCCCTCGGCAACCT
CACGGCGGTGGACGGCGGCGGCGGCCCGGAGCTCAGGCAGTACAGCCCGAGCAAGTCGTC
GACGAGCAAGACGGTCACCTGCGCCAGCAACCTCTGCGACCAGCCCAACGCCTGCGCCAC
GGCCACCAGCAGCTGCCCCTACGCCGTCCGCTACGCCATGGCCAACACCTCCTCCTCCGG
CGAGCTCGTCGAGGACGTGCTCTACCTCACCAGGGAGAAGGGCGCCGCCGCCGCCGCCGC
CGGAGCCGCCGTGCGAACTCCCGTGGTGTTCGGGTGCGGGCAGGTGCAGACGGGCTCGTT
CCTCGACGGCGCCGCCGCCGACGGCCTCATGGGTCTCGGCATGGAGAAGGTGTCCGTGCC
CAGCATCCTCGCCAGCACCGGCGTCGTCAAGTCGAACAGCTTCTCCATGTGCTTCAGCAA
AGACGGCCTCGGCCGGATCAACTTCGGCGACACCGGCAGCGCCGACCAGTCCGAGACGCC
GTTCATCGTCAAATCCACACACTCCTACTACAACATCAGCATCACGTCGATGAGCGTCGG
GGACAAGAACTTGCCGTTGGGGTTCTACGCCATTGCTGACTCCGGCACGTCCTTCACCTA
CCTCAACGACCCGGCCTACACGGCCTACACCACCAATTTCAACGCGCAGATCAGCGAGAG
GAGGGCCAACTTCAGCGGCAGTACTCGTTCTGGTCCATTTCCTTTCGAGTACTGCTACTC
GTTGAGTCCTGATCAAACAACGGTGGAACTGCCTGTTGTGAGCCTGACGACCAATGGAGG
AGCCGTGTTCCCGGTGACCAGCCCTGTTTACCCCATCGCGGCTCAGATGACAAACGGAGA
GATTCGTATCATTGGTTACTGCCTGGCTGTCATCAAGAGCGATCTCCCCATCGACATCAT
TGGCCAGAACTTCATGACCGGGCTCAAGGTCGTCTTCAACCGTGAGAAATCCGTCCTGGG
CTGGCAAAAGTTCGACTGTTACAAGGACGAGAAGATGACAGACGACGGGTCGAGCGTCGG
GAGCCCGAGCCCATCGCCGGGGCCGACCACTCACGTCTTCCCGCAGCCGCAGGAGAGCGA
CTCGCCGGCGGGCAGAACGCCCATCCCCGGCGCGGCGCCGGTGCCGCGGTCGAGCAGCGC
GGCAGCTGGCGGCCGTGCAGGCTTCCGGCTCCTGTCGTCCATGGCGCTCTTGCTGCTGGC
TGCTGCTGCTGCAGCTGTTTTCTGATGATTTTTTTTTTACTTGGGGAGTTTATAGGTGAT
TTCATTCGTGGTGGCTGCTCTGCTGTGTACATAACACATGCATGCATTCGAGATGATTTT
TATTCAGAAAGCGTAGATAGATCGATCGATCATTGTAGGATTTAGTAATTTGTTCTTGTG
ATGATGATTGATGTGTATATGGTTACG