Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0717600-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:30493074:30496136:1 gene:Os06g0717600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0717600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0717600-02)
Sequence

ATGGATCCGTCGGGCGCCTTCTTCCACGCGGCTCCCCGGAGCGGCTCGAATGTGTCGCTG
GCGTCGCTGGCGAGGACGGCCGGAGGGAGGAGGATGATGCACAGGGTCTTCCGCGGCGTC
ATCACCTTCATCTTCGCCATAGCTGGACTGTTTCTTGGAGCGGTGACTGGCGGGCTGATC
GGGCTGGCCACCGAGAGCGGCCTCTTCCGCGGCACCGGCATCGGCGCCATCACCGGCGCC
CTCGTCTCCATCGAGGTCGTCGACTCCTCCATCCGCGTCTGGCGATCCCGCCGATCCGGG
ATCTCCAGCATCTGCTATGTGCTTAATGTGATCTACAGCCTCCTGACCGGCAGGCTTGTC
CGCGAGAAGGTCGATCCGGCGGTGCAGCGGGTGGTCCGGAGCCAGATGAATGCAGTGGAT
TCATCGCCCTTCAGGGAGTCCCCTGACCTGTTCGAGATCGAGGGCACCAACGGCATGCCA
CGGGCATCCATCGACAAGCTCCCGGAGGTCAGGATCACTGAGGAGTACAGGAGGAACGCC
ATTGGTGACCTCTCGGGATGTTCAGTTTGCCTCCAGGATTTCCAGACAGGTGAGAAGGTG
AGGAGCTTGCCGGATTGCTGGCACGTGTTCCATGTGCCGTGCATCGACGGCTGGTTGATC
AAGCATGGATCCTGCCCGTTGTGCCGGAGGAAGCTGTGA

Peptide Sequence

PEP ID

Os06t0717600-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:30493074:30496136:1 gene:Os06g0717600 transcript:Os06t0717600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0717600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0717600-02)
Sequence

MDPSGAFFHAAPRSGSNVSLASLARTAGGRRMMHRVFRGVITFIFAIAGLFLGAVTGGLI
GLATESGLFRGTGIGAITGALVSIEVVDSSIRVWRSRRSGISSICYVLNVIYSLLTGRLV
REKVDPAVQRVVRSQMNAVDSSPFRESPDLFEIEGTNGMPRASIDKLPEVRITEEYRRNA
IGDLSGCSVCLQDFQTGEKVRSLPDCWHVFHVPCIDGWLIKHGSCPLCRRKL

Transcript Sequence

Transcript ID

Os06t0717600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:30493074:30496136:1 gene:Os06g0717600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0717600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0717600-02)
Sequence

ATCTTACTCTAGCTTCTCCATTCCAAAATTCACCACCGCCGGCGCCGCCATCTCCATTCC
AAAATTTGCTCTGCGTCGAGTCGTGTGATCGATCGATCGATCGAGGTGTACGTGTGCGCT
GCTGGGGAAAAGGGAAATGGATCCGTCGGGCGCCTTCTTCCACGCGGCTCCCCGGAGCGG
CTCGAATGTGTCGCTGGCGTCGCTGGCGAGGACGGCCGGAGGGAGGAGGATGATGCACAG
GGTCTTCCGCGGCGTCATCACCTTCATCTTCGCCATAGCTGGACTGTTTCTTGGAGCGGT
GACTGGCGGGCTGATCGGGCTGGCCACCGAGAGCGGCCTCTTCCGCGGCACCGGCATCGG
CGCCATCACCGGCGCCCTCGTCTCCATCGAGGTCGTCGACTCCTCCATCCGCGTCTGGCG
ATCCCGCCGATCCGGGATCTCCAGCATCTGCTATGTGCTTAATGTGATCTACAGCCTCCT
GACCGGCAGGCTTGTCCGCGAGAAGGTCGATCCGGCGGTGCAGCGGGTGGTCCGGAGCCA
GATGAATGCAGTGGATTCATCGCCCTTCAGGGAGTCCCCTGACCTGTTCGAGATCGAGGG
CACCAACGGCATGCCACGGGCATCCATCGACAAGCTCCCGGAGGTCAGGATCACTGAGGA
GTACAGGAGGAACGCCATTGGTGACCTCTCGGGATGTTCAGTTTGCCTCCAGGATTTCCA
GACAGGTGAGAAGGTGAGGAGCTTGCCGGATTGCTGGCACGTGTTCCATGTGCCGTGCAT
CGACGGCTGGTTGATCAAGCATGGATCCTGCCCGTTGTGCCGGAGGAAGCTGTGAGATCG
ACGACGACGACGGCCATGGTGATCACTGCTATAGTTGTAGCAGAAGGAGGAGGAGGCTGC
TCTGCTTTCTTGCTGTGTGCTGCGATCGAGTTGTCCATCAGTGTTGCTGTTCTTAGAGAA
GAAGACTGACATCTCTCTCTCTCTCTATATATATAGAAAACCCTTAATCTATAGAGCATT
TTGTTTCTGCTTATATTGCTACATGCTCTATCTTTTTGGTTGAACTATCTACATATATAT
CTATATTTCTATCTACTCACTCCTTTCTCCTTATGTAACATACCTCTCAAAACTCTGAAC
TGGCTTGTGCTGATCATCTGATGTATAATATATAATATATAAATATATATCGCCCCTTGG
AC