Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0717400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:30480738:30485250:-1 gene:Os06g0717400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pseudouridine synthase domain containing protein. (Os06t0717400-01)
Sequence

ATGGCAACCACGGCGGCGGCGTCGCCGCCGGCGATCGCGACCGCGCTCTCCGCCCTGCTG
CGGCGACAGAGGAGGAGAAGCAGCCGTTGCGTGGGGGCATCGCACGCCAGATGCCTCGCC
GCCGACGCGAATGCTGAGGCGGTGGCGCCGAGCCGGAGGGGAGGCCACGGTGGGACGCGC
CTTGAGGAGGCCGTGCCGGCCGGCGAGGGGCGCTCGAGGATCGACGCGTGGATCTCCGCG
AGGCTCGGGGGCGGAGGCGTCAGCCGCGCGCGTATCCAGGCGAGCATCCGCGCCGGCCTC
GTCGTCGTCAATGGCCGTCCCGTCTCCAAGGTTTCACATATGGTAAAAGGTGGAGACATT
GTCAGCTGCACGGTGTTGGAGCTGCAGCCACTGAGAGCAGAGCCAGAGGACATCCCACTG
GACATTGTTTATGAGGATGACCATCTTCTCGTTGTGAACAAACCGGCTCATATGGTTGTT
CACCCAGCACCAGGAAATGCAAATGGCACCTTAGTCAATGCTATACTTCACCACTGCAAG
ATTTCAACATTTACCTGTTTAGCACGTAATTCAATTGATGATGAATGCCCTGATTCTTCA
GATGATGATATTGATGTGTTTGACATCGATCAATTTACTACTGGCGAAGTAAGTTCAGAA
GTCCGTGAAGCTCTTGTGCGTCCTGGTATCGTGCATAGGCTTGATAAGGGTACAAGTGGA
CTACTTGTTGTAGCCAAGGATGAGCATTCTCATGCACAATTAGCAGAACAATTCAAGCTG
CATACAATACGCAGAGTGTACATCAGTCTTACTTGTGGTGCACCGAATCCGAATTCTGGC
AGGATTGAAGTTCCTATAGCTCGTGATCCTAACAACCGGATCCGTATGATTGCCACTCCT
GGATCAGGCCATAGATATGCACGACATGCCGCTAGTAGGTATAAAGTAAGAGAGGTCTTT
GCTGGTGGTGGATCAGCACTAGTAGAGTGGAGATTGGAGACAGGACGAACTCACCAGATT
CGAGCACATGCAAAGTACCTAGGGATTCCCCTTCTTGGGGATGAAACATACGGAGGTACC
AAAAGCATGGCATTGTCACTTTTGAGACCCAGAACTCCTTCAAGATATCATTGTGATCTT
TCAAATATGATATCAAAGATAGACAGGCCATGTCTCCATGCCGCGTTGCTTGGATTTAAG
CATCCTCACTCAGGAAAGATCCTTGAATTCTCATGCCCCCCACCAGATGATTTTACTGAG
GTACTCAATGAACTTCATCAGGTTACACTGGCAAGTAATGGTAATAGTGGTGGCGGTGTT
GCCCGCATTTGTGATTAG

Peptide Sequence

PEP ID

Os06t0717400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:30480738:30485250:-1 gene:Os06g0717400 transcript:Os06t0717400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pseudouridine synthase domain containing protein. (Os06t0717400-01)
Sequence

MATTAAASPPAIATALSALLRRQRRRSSRCVGASHARCLAADANAEAVAPSRRGGHGGTR
LEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDI
VSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCK
ISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSG
LLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATP
GSGHRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGT
KSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTE
VLNELHQVTLASNGNSGGGVARICD

Transcript Sequence

Transcript ID

Os06t0717400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:30480738:30485250:-1 gene:Os06g0717400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pseudouridine synthase domain containing protein. (Os06t0717400-01)
Sequence

ACTTCCCCCTCCCATCTCCCATGGCAACCACGGCGGCGGCGTCGCCGCCGGCGATCGCGA
CCGCGCTCTCCGCCCTGCTGCGGCGACAGAGGAGGAGAAGCAGCCGTTGCGTGGGGGCAT
CGCACGCCAGATGCCTCGCCGCCGACGCGAATGCTGAGGCGGTGGCGCCGAGCCGGAGGG
GAGGCCACGGTGGGACGCGCCTTGAGGAGGCCGTGCCGGCCGGCGAGGGGCGCTCGAGGA
TCGACGCGTGGATCTCCGCGAGGCTCGGGGGCGGAGGCGTCAGCCGCGCGCGTATCCAGG
CGAGCATCCGCGCCGGCCTCGTCGTCGTCAATGGCCGTCCCGTCTCCAAGGTTTCACATA
TGGTAAAAGGTGGAGACATTGTCAGCTGCACGGTGTTGGAGCTGCAGCCACTGAGAGCAG
AGCCAGAGGACATCCCACTGGACATTGTTTATGAGGATGACCATCTTCTCGTTGTGAACA
AACCGGCTCATATGGTTGTTCACCCAGCACCAGGAAATGCAAATGGCACCTTAGTCAATG
CTATACTTCACCACTGCAAGATTTCAACATTTACCTGTTTAGCACGTAATTCAATTGATG
ATGAATGCCCTGATTCTTCAGATGATGATATTGATGTGTTTGACATCGATCAATTTACTA
CTGGCGAAGTAAGTTCAGAAGTCCGTGAAGCTCTTGTGCGTCCTGGTATCGTGCATAGGC
TTGATAAGGGTACAAGTGGACTACTTGTTGTAGCCAAGGATGAGCATTCTCATGCACAAT
TAGCAGAACAATTCAAGCTGCATACAATACGCAGAGTGTACATCAGTCTTACTTGTGGTG
CACCGAATCCGAATTCTGGCAGGATTGAAGTTCCTATAGCTCGTGATCCTAACAACCGGA
TCCGTATGATTGCCACTCCTGGATCAGGCCATAGATATGCACGACATGCCGCTAGTAGGT
ATAAAGTAAGAGAGGTCTTTGCTGGTGGTGGATCAGCACTAGTAGAGTGGAGATTGGAGA
CAGGACGAACTCACCAGATTCGAGCACATGCAAAGTACCTAGGGATTCCCCTTCTTGGGG
ATGAAACATACGGAGGTACCAAAAGCATGGCATTGTCACTTTTGAGACCCAGAACTCCTT
CAAGATATCATTGTGATCTTTCAAATATGATATCAAAGATAGACAGGCCATGTCTCCATG
CCGCGTTGCTTGGATTTAAGCATCCTCACTCAGGAAAGATCCTTGAATTCTCATGCCCCC
CACCAGATGATTTTACTGAGGTACTCAATGAACTTCATCAGGTTACACTGGCAAGTAATG
GTAATAGTGGTGGCGGTGTTGCCCGCATTTGTGATTAGTGCAAGGCAGAAATCCACGAAA
ATGTTGCCGAGGAAATGGTATGCCTGCCTTTTTATCTGACTTCTGCACTCTGATCAAGGG
GCAAGACTGCAGATACAGAATTGGAACTGATTATAAAGCTAGCTTCCCTTGTTTCATACT
CCGAAGGGAGGGGCCAAAATGTTCTTAATCAGTAGGTCCTTGTGCTCTCCATATCTTCAA
CGAGTGACCAGGACTACACCAAGATGATGAACAAGTTAAACTTAACAAGGAAGATGCTTT
GAGGATTTTTTTTTCTTTTACAAGACCAAGAAACAGAGCTTTAGCACTCGGTGTACACCT
GATGTAGGAAAAGAATGTGATTCCTAAAAGTATTCTAGCACAGTTCGCTCTGTTGAATGT
ACAGATAACTAAAAAACGCCAAAACAAATCTGCTGTGCGGAAGGAAGAATGTTATCTGCC
CTTTTGCTTTCTTTAAACCTTACCTTTATATACTATAATTTCCTACTTGACTGAACGGCC
AAATCAGGCCGTAAGTCTGTAACTCAGGCCTGTGTTGGTCGCTGGGCTCAGAATTTTGCT
GAGGAGCTCGAACAAGTGATTGAATACTCATGATAGCATATGCAATTGCCAGAATTTCTT
ATGCTGCAGTTTACATGT