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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0708500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:29973898:29976258:1 gene:Os06g0708500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 20-1 description:Similar to Peptidyl-prolyl cis-trans isomerase. (Os06t0708500-01);Similar to Peptidyl-prolyl cis-trans isomerase. (Os06t0708500-02)
Sequence

ATGGCGGGGAGCGGGTGGAGGAGGATCCCGGCGGTGAGGAGGCCGCCCATGTCGCGCCCG
GCCTCGGTCTGCCTCTGGATCGTGCTCGTCGCCGCCACCCTGGCGCTCGCCCAGGTGCTC
ATCCACCTCGCGAAGAAATCGAAGGCGGATTTGACTGAGGTCACCCACAAGGTCTACTTC
GACGTCGAGATTGATGGCAAGCCCGCAGGACGGGTTGTCATGGGACTTTTCGGGAAGACT
GTTCCTAAAACGGCAGAGAACTTCCGAGCACTTTGCACAGGAGAGAAAGGAACTGGAAAG
AGTGGCAAAGCACTCCACTTCAAGGGAAGTGCATTCCACAGAATTATACCCAGCTTTATG
ATCCAAGGAGGTGACTTCACACTTGGTGATGGAAGGGGTGGTGAATCTATCTATGGGACG
AAGTTCGCCGATGAAAACTTCAAGATCAAGCACACCGGACCAGGCCTCCTGTCCATGGCC
AATGCTGGGAGAGACACAAACGGGTCCCAGTTTTTCATCACCACTGTAACCACCAGCTGG
TTGGACGGGAAGCACGTCGTGTTCGGTAAGGTGCTGTCTGGAATGGATGTGGTTTACAAG
ATTGAAGCTGAGGGCCAGCAGAGTGGGTCACCGAAGAGCAAAGTTGTCATCGCGGACAGC
GGCGAACTGCCGATGTAA

Peptide Sequence

PEP ID

Os06t0708500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:29973898:29976258:1 gene:Os06g0708500 transcript:Os06t0708500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 20-1 description:Similar to Peptidyl-prolyl cis-trans isomerase. (Os06t0708500-01);Similar to Peptidyl-prolyl cis-trans isomerase. (Os06t0708500-02)
Sequence

MAGSGWRRIPAVRRPPMSRPASVCLWIVLVAATLALAQVLIHLAKKSKADLTEVTHKVYF
DVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRIIPSFM
IQGGDFTLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANAGRDTNGSQFFITTVTTSW
LDGKHVVFGKVLSGMDVVYKIEAEGQQSGSPKSKVVIADSGELPM

Transcript Sequence

Transcript ID

Os06t0708500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:29973898:29976258:1 gene:Os06g0708500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 20-1 description:Similar to Peptidyl-prolyl cis-trans isomerase. (Os06t0708500-01);Similar to Peptidyl-prolyl cis-trans isomerase. (Os06t0708500-02)
Sequence

GTGGAGCAACAGATCTATCCATCCATCCCATCCTCGATCCTTCATTCCTGCCCGGCGGCG
AGCGAGAGAGAGGCGGAGGAGATCCGAGATGGCGGGGAGCGGGTGGAGGAGGATCCCGGC
GGTGAGGAGGCCGCCCATGTCGCGCCCGGCCTCGGTCTGCCTCTGGATCGTGCTCGTCGC
CGCCACCCTGGCGCTCGCCCAGGTGCTCATCCACCTCGCGAAGAAATCGAAGGCGGATTT
GACTGAGGTCACCCACAAGGTCTACTTCGACGTCGAGATTGATGGCAAGCCCGCAGGACG
GGTTGTCATGGGACTTTTCGGGAAGACTGTTCCTAAAACGGCAGAGAACTTCCGAGCACT
TTGCACAGGAGAGAAAGGAACTGGAAAGAGTGGCAAAGCACTCCACTTCAAGGGAAGTGC
ATTCCACAGAATTATACCCAGCTTTATGATCCAAGGAGGTGACTTCACACTTGGTGATGG
AAGGGGTGGTGAATCTATCTATGGGACGAAGTTCGCCGATGAAAACTTCAAGATCAAGCA
CACCGGACCAGGCCTCCTGTCCATGGCCAATGCTGGGAGAGACACAAACGGGTCCCAGTT
TTTCATCACCACTGTAACCACCAGCTGGTTGGACGGGAAGCACGTCGTGTTCGGTAAGGT
GCTGTCTGGAATGGATGTGGTTTACAAGATTGAAGCTGAGGGCCAGCAGAGTGGGTCACC
GAAGAGCAAAGTTGTCATCGCGGACAGCGGCGAACTGCCGATGTAATGAGCTGAAATGAT
GTTTCACTGAAGCTACTGCTACTGCTTCTCGTTGTAGAACTGTTATTAGCTGCTCTGTTT
TGCTATGCTTCTACCCCGAATCTGGTTGGAGTAAATTTCTGTTAGACTATAACAGCGTGC
TTATATCGCCTCTTAGTTGTGGGCGATTTGGAGTGAACTAGCATAAAAAGGTCGAAACTT
TACTT