Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0706400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:29838314:29841264:1 gene:Os06g0706400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PTR/NRT1 homologue description:PTR/NRT1 (peptide transporter/nitrate transporter 1) family protein, Nitrogen utilization efficiency, growth and grain yield (Os06t0706400-01)
Sequence

ATGCTCATGGCGGCTCTGTCGGCGCTTCTGCCGCTGCTGATCAAGGACACGTCGTCCATG
GCTTCAGCTCAAGTGATCATCCTGTTTCTTGGCCTGTACATGATCGCATTTGGGGTGGGT
GGTCTCCGGCCGTGCCTGATGTCCTTCGGCGCCGACCAGTTCGACGACGGCGACACGTCG
GAGCGCATCAGCAAGGGCTCCTACTTCAACTGGTACATCTTCACCATGAACTGCGCGTCC
GTGATATCCACCACCGCCATGGTGTGGGTGCAAGACCACTACGGGTGGGCATTGGGGTTG
GGGATTCCGGCGATGGTCCTCGCCGTCGGGCTCTCCTGCCTTGTCGCCGCGTCTCGGGCG
TACAGGTTTCAGACAACCCGCGGTAGCCCGCTCACCAGAGTCTGCCAGGTCGTCGTCGCC
GCCGTCCGCAAGTTCAACGTCGCGCCGCCGGCCGACATGGCCCTTCTCTACGACCTATCG
GAGGATGCCTCCTCCATGAAGGGAGTTCAGAGGATCGAGCACACCGCCGATCTCCGATTC
TTCGACAAGGCCGCCGTCGTGACGGCGTCGGACGAGGAGGCGGAGGGCGCCGCGCCGCGC
AATCCATGGAGGCTTTGCGTGGTGACGCAGGTGGAGGAGCTCAAGATTCTCGTCAGGATG
CTGCCCCTGTGGGCGTGCGTCGCCTTCTACTACACCGCGACGGCGCAGGCCAATTCGACG
TTCGTCGAGCAGGGCATGGCGATGGACACGCGCGTCGGCTCCTTCCACGTCCCGCCGGCA
TCCCTGGCCACCTTCCAGATCATCACCACGATCGTGTTGATCCCGCTGTACGACCGCGCG
TTCGTGCCGGCGGCGAGGAGGCTGACGGGGAGAGAGAAGGGCATCTCCGACCTTCTCAGG
ATCGGCGGCGGCCTCGCCATGGCCGCGCTCGCCATGGCCGCGGCGGCGCTGGTCGAGACG
AGGCGCGCCCGCGCGGCGCACGCCGGGATGGAGCCGACGAGCATCCTGTGGCAGGCGCCG
CAGTACGTGCTGGTGGGCGTCGGCGAGCTGCTCGCCACCGTGGGGCAGCTGGACTTCTTC
TACAGCCAGGCGCCGCCGGCCATGAAGACGGTGTGCACGGCGCTCGGGTTCATCTCCGTC
GCGGCGGGGGAGTACCTGAGCTCGCTCGTCGTGACGGCCGTGTCGTGGGCGACGGCGACC
GGCGGCCGGCCGGGGTGGATCCCCGACGACCTCAACGAGGGGCACCTGATCGCTTCTTCT
GGATGA

Peptide Sequence

PEP ID

Os06t0706400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:29838314:29841264:1 gene:Os06g0706400 transcript:Os06t0706400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PTR/NRT1 homologue description:PTR/NRT1 (peptide transporter/nitrate transporter 1) family protein, Nitrogen utilization efficiency, growth and grain yield (Os06t0706400-01)
Sequence

MLMAALSALLPLLIKDTSSMASAQVIILFLGLYMIAFGVGGLRPCLMSFGADQFDDGDTS
ERISKGSYFNWYIFTMNCASVISTTAMVWVQDHYGWALGLGIPAMVLAVGLSCLVAASRA
YRFQTTRGSPLTRVCQVVVAAVRKFNVAPPADMALLYDLSEDASSMKGVQRIEHTADLRF
FDKAAVVTASDEEAEGAAPRNPWRLCVVTQVEELKILVRMLPLWACVAFYYTATAQANST
FVEQGMAMDTRVGSFHVPPASLATFQIITTIVLIPLYDRAFVPAARRLTGREKGISDLLR
IGGGLAMAALAMAAAALVETRRARAAHAGMEPTSILWQAPQYVLVGVGELLATVGQLDFF
YSQAPPAMKTVCTALGFISVAAGEYLSSLVVTAVSWATATGGRPGWIPDDLNEGHLIASS
G

Transcript Sequence

Transcript ID

Os06t0706400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:29838314:29841264:1 gene:Os06g0706400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PTR/NRT1 homologue description:PTR/NRT1 (peptide transporter/nitrate transporter 1) family protein, Nitrogen utilization efficiency, growth and grain yield (Os06t0706400-01)
Sequence

GATTAGCTTGTACAGTTTGTCCTCGAGCTCTCGACCGGCTCCGGCAATGGCGTCCACGGA
CACTGAGCAGCAGGAACACGCAGTGGCGCTGCTACAACCCGAGGTTGAAGAAGCATACAC
CACTGATGGGTCTCTTGGCGTCGATGGCAACCCGGCGCTGAAGCATCGCACAGGCGGATG
GATGGCATGCCGCCCGATTCTTGGCACCGAGTTCTGCTACTGCCTGGCCTACTACGGCAT
CACGTTCAACCTCGTCACCTACCTCACCGCCGAGCTGCACCAGAGCAACGTCGCCGCCGC
CAACAACGTGTCGACGTGGCAGGCCACCTGCTTCCTCACGCCGCTGGCCGGAGCCGTCGC
CGCCGATTCCTACTGGGGAAGGTACCGCACCATGGTCGTCAGCTGCTGCATCGGCGTCGC
TGTTAGTCCCCTCCATTTCATTCGATCCGGGTTGTGTTTAGTTCCAAATTTTTTTTTTCA
AACTTCTAACTTTCCATCACATTAAATTTTTCATACACACAATTTTTTTCAGTCACGTCG
TCTTCAATTTCAACCAAAATCTAAACTTTATACCAATCTAAACACAGCCTTAATTAGAAT
TAGTCACTGTGTCCTTCCTGCCGTGAATTTATGGCTGATGGCAAGTAATCAGTCACTGTG
TGGGATGTGGATTTTTATCCCTTGAGAGAACATTTAATTTTATATTAATATTAATTTATG
TTAATTTATGTTGTCATTTAATTTTATATTTTATATTAATTTATGTTGTCCATTTTTTTT
AATTTTTTTATGACTAATTAGTTGGCATGGATGAAACGAGGGATATTTCCTGGAGGGATG
AAATCACTTTCCCCACTGTGTGCTGCCATGAATGCAAATCCAATCAGCTTCATGGCTGTA
CGTACCTAATCTGTGGTGCAGGGCATGCTCATGGCGGCTCTGTCGGCGCTTCTGCCGCTG
CTGATCAAGGACACGTCGTCCATGGCTTCAGCTCAAGTGATCATCCTGTTTCTTGGCCTG
TACATGATCGCATTTGGGGTGGGTGGTCTCCGGCCGTGCCTGATGTCCTTCGGCGCCGAC
CAGTTCGACGACGGCGACACGTCGGAGCGCATCAGCAAGGGCTCCTACTTCAACTGGTAC
ATCTTCACCATGAACTGCGCGTCCGTGATATCCACCACCGCCATGGTGTGGGTGCAAGAC
CACTACGGGTGGGCATTGGGGTTGGGGATTCCGGCGATGGTCCTCGCCGTCGGGCTCTCC
TGCCTTGTCGCCGCGTCTCGGGCGTACAGGTTTCAGACAACCCGCGGTAGCCCGCTCACC
AGAGTCTGCCAGGTCGTCGTCGCCGCCGTCCGCAAGTTCAACGTCGCGCCGCCGGCCGAC
ATGGCCCTTCTCTACGACCTATCGGAGGATGCCTCCTCCATGAAGGGAGTTCAGAGGATC
GAGCACACCGCCGATCTCCGATTCTTCGACAAGGCCGCCGTCGTGACGGCGTCGGACGAG
GAGGCGGAGGGCGCCGCGCCGCGCAATCCATGGAGGCTTTGCGTGGTGACGCAGGTGGAG
GAGCTCAAGATTCTCGTCAGGATGCTGCCCCTGTGGGCGTGCGTCGCCTTCTACTACACC
GCGACGGCGCAGGCCAATTCGACGTTCGTCGAGCAGGGCATGGCGATGGACACGCGCGTC
GGCTCCTTCCACGTCCCGCCGGCATCCCTGGCCACCTTCCAGATCATCACCACGATCGTG
TTGATCCCGCTGTACGACCGCGCGTTCGTGCCGGCGGCGAGGAGGCTGACGGGGAGAGAG
AAGGGCATCTCCGACCTTCTCAGGATCGGCGGCGGCCTCGCCATGGCCGCGCTCGCCATG
GCCGCGGCGGCGCTGGTCGAGACGAGGCGCGCCCGCGCGGCGCACGCCGGGATGGAGCCG
ACGAGCATCCTGTGGCAGGCGCCGCAGTACGTGCTGGTGGGCGTCGGCGAGCTGCTCGCC
ACCGTGGGGCAGCTGGACTTCTTCTACAGCCAGGCGCCGCCGGCCATGAAGACGGTGTGC
ACGGCGCTCGGGTTCATCTCCGTCGCGGCGGGGGAGTACCTGAGCTCGCTCGTCGTGACG
GCCGTGTCGTGGGCGACGGCGACCGGCGGCCGGCCGGGGTGGATCCCCGACGACCTCAAC
GAGGGGCACCTGATCGCTTCTTCTGGATGATGGCTGGGCTCGGTTGCCTCAATCTTGTGG
TGTTTACGAGCTGTGCCATGAGGTACAAATCCAGGAAGGCCTGTTGATACTTCTGGGCTT
GTTTGGTAGGCTCGAAATTCCGGCCCATGCACTCTGACGGGCCATTATGTATGGGAATAA
GTCCATCCGACCTCCCTCATCTCTTGCACTTGGTCGAATCGCATCCCTCAGCCGCAAAAA
ACTGGGTAAAACGCCTCCTGAATCTCCC