Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0701700-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:29538938:29541203:-1 gene:Os06g0701700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIGH-AFFINITY K+ TRANSPORTER 1 description:Ion transporter , Na+/K+ symport (Os06t0701700-01);Similar to Cation transporter HKT1. (Os06t0701700-02)
Sequence	ATGACGAGCATTTACCATGATTTCATTCATAACAAGCTGCAGAGCTTCGGAAGGATCGGT AGATATTTTGTTAATTTTGTTGTTCTAGCCCATAGATTCATTGCCTTGCATATTCACCCA TTCTGGATTCAGTTGTCCTACTTCCTTCTCATTAGCATCCTAGGTTCAGTTCTATTGATG TTCCTGAAGCCAAGCAACCCAGAATTCAGACCAGGTTACATTGACATGCTGTTCTTGTCA ACCTCTGCTCTGACACTTTCCAGCCTCATCACCATCGAAATGGAGGTTCTCTCAAGCTCA CAAATTGTGGTTATTACACTGCTGATGCTTCTCGGGGGTGAAGTCTTTGTTTCTTTCCTA GGCCTCATGCTTAGACTGAACCATAAGCACAACCCAGAGTTTTCAGGGGACAAGGTCAGT TCAGTTCCTATCGAGCTTGATACAATCAACTCGGCAAGCACTGTGATAAGTTGTGAAGAG CTGCAGCTGGAAGCAGCAATTCCTGAAGTTCCATCTTCCACCATTAAGGATTTGAAGAGG AGCAAGCGCCTGAGGTGGTTCTTAGGATTTGTAGTCTTCAGCTATTTTGTTGTGATCCAT GTCGCTGGCTTTCTGCTGGTTCTCTGGTACATAAGTCGTGTCTCATCTGCAAAAGCTCCA CTGAAGAAGAAAGGGATCAACATTGCACTCTTCTCATTCTCGGTCACAGTCTCCTCGTTT GCGAATGTGGGGCTCGTGCCGACGAATGAGAACATGGCAATCTTCTCCAAGAACCCGGGC CTCCTCCTCCTGTTCATCGGCCAGATTCTTGCAGGCAATACACTTTACCCTCTCTTCCTA AGGCTATTGATATGGTTCCTGGGGAAGGTGACCAAGTTGAGAGAACTGAAGCTCATGATC AAGAACCCTGAGGAGCTACAGTATGATTATTTGCTTCCTAAGTTGCCAACGGCGTTTCTG GCATCAACTGTCATTGGCCTTATGGCTTCCTTGGTCACATTGTTCGGTGCTGTCGACTGG AATTCTTCAGTCTTTGATGGACTCAGCTCTTACCAGAAGATTATCAATGCATTGTTCATG GCAGTGAACGCAAGGCACTCGGGGGAGAACTCCATCGACTGCTCACTCATCGCCCCTGCT GTTCTAGTACTGTTCATCATCTTAATGTACTTACCACCATCGACAACATTTGCACTGTCC AATGGAGATGAAAAAACTGCAAATAAGAAAGCGAAAAGAAAATTAGGTTTAGTGGTGCAG AACTTGGCATTTTCACAGCTTGCCTGCATCTCAGTCTTTGTGATAGTTGCATTCATCACT GAGAGGAGTCGTCTCAGAAATGATCCACTCAACTTCTCTGCTCTGAACATGATATTTGAA ATCATCAGTGCATATGGGAATGTAGGGCTATCCACTGGTTACAGCTGTTCGAGGTTGCAG AAACTGCACCCGGGGAGCATCTGCCAGGACAAGCCGTACAGCTTGTCCGGATGGTGGAGT GATGAAGGAAAGTTGCTGCTAGTCTTTGTGATGCTCTATGGAAGGCTCAAGGCCTTCACA AAAGGTACAGGTGAATATTGGAGGCTATGGTAA

Peptide Sequence

PEP ID	Os06t0701700-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:29538938:29541203:-1 gene:Os06g0701700 transcript:Os06t0701700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIGH-AFFINITY K+ TRANSPORTER 1 description:Ion transporter , Na+/K+ symport (Os06t0701700-01);Similar to Cation transporter HKT1. (Os06t0701700-02)
Sequence	MTSIYHDFIHNKLQSFGRIGRYFVNFVVLAHRFIALHIHPFWIQLSYFLLISILGSVLLM FLKPSNPEFRPGYIDMLFLSTSALTLSSLITIEMEVLSSSQIVVITLLMLLGGEVFVSFL GLMLRLNHKHNPEFSGDKVSSVPIELDTINSASTVISCEELQLEAAIPEVPSSTIKDLKR SKRLRWFLGFVVFSYFVVIHVAGFLLVLWYISRVSSAKAPLKKKGINIALFSFSVTVSSF ANVGLVPTNENMAIFSKNPGLLLLFIGQILAGNTLYPLFLRLLIWFLGKVTKLRELKLMI KNPEELQYDYLLPKLPTAFLASTVIGLMASLVTLFGAVDWNSSVFDGLSSYQKIINALFM AVNARHSGENSIDCSLIAPAVLVLFIILMYLPPSTTFALSNGDEKTANKKAKRKLGLVVQ NLAFSQLACISVFVIVAFITERSRLRNDPLNFSALNMIFEIISAYGNVGLSTGYSCSRLQ KLHPGSICQDKPYSLSGWWSDEGKLLLVFVMLYGRLKAFTKGTGEYWRLW

Transcript Sequence

Transcript ID	Os06t0701700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:29538938:29541203:-1 gene:Os06g0701700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIGH-AFFINITY K+ TRANSPORTER 1 description:Ion transporter , Na+/K+ symport (Os06t0701700-01);Similar to Cation transporter HKT1. (Os06t0701700-02)
Sequence	GCTTTCTCATACTCGTTGGCTCGTTGCTCCTTTGCATCAAATGACGAGCATTTACCATGA TTTCATTCATAACAAGCTGCAGAGCTTCGGAAGGATCGGTAGATATTTTGTTAATTTTGT TGTTCTAGCCCATAGATTCATTGCCTTGCATATTCACCCATTCTGGATTCAGTTGTCCTA CTTCCTTCTCATTAGCATCCTAGGTTCAGTTCTATTGATGTTCCTGAAGCCAAGCAACCC AGAATTCAGACCAGGTTACATTGACATGCTGTTCTTGTCAACCTCTGCTCTGACACTTTC CAGCCTCATCACCATCGAAATGGAGGTTCTCTCAAGCTCACAAATTGTGGTTATTACACT GCTGATGCTTCTCGGGGGTGAAGTCTTTGTTTCTTTCCTAGGCCTCATGCTTAGACTGAA CCATAAGCACAACCCAGAGTTTTCAGGGGACAAGGTCAGTTCAGTTCCTATCGAGCTTGA TACAATCAACTCGGCAAGCACTGTGATAAGTTGTGAAGAGCTGCAGCTGGAAGCAGCAAT TCCTGAAGTTCCATCTTCCACCATTAAGGATTTGAAGAGGAGCAAGCGCCTGAGGTGGTT CTTAGGATTTGTAGTCTTCAGCTATTTTGTTGTGATCCATGTCGCTGGCTTTCTGCTGGT TCTCTGGTACATAAGTCGTGTCTCATCTGCAAAAGCTCCACTGAAGAAGAAAGGGATCAA CATTGCACTCTTCTCATTCTCGGTCACAGTCTCCTCGTTTGCGAATGTGGGGCTCGTGCC GACGAATGAGAACATGGCAATCTTCTCCAAGAACCCGGGCCTCCTCCTCCTGTTCATCGG CCAGATTCTTGCAGGCAATACACTTTACCCTCTCTTCCTAAGGCTATTGATATGGTTCCT GGGGAAGGTGACCAAGTTGAGAGAACTGAAGCTCATGATCAAGAACCCTGAGGAGCTACA GTATGATTATTTGCTTCCTAAGTTGCCAACGGCGTTTCTGGCATCAACTGTCATTGGCCT TATGGCTTCCTTGGTCACATTGTTCGGTGCTGTCGACTGGAATTCTTCAGTCTTTGATGG ACTCAGCTCTTACCAGAAGATTATCAATGCATTGTTCATGGCAGTGAACGCAAGGCACTC GGGGGAGAACTCCATCGACTGCTCACTCATCGCCCCTGCTGTTCTAGTACTGTTCATCAT CTTAATGTACTTACCACCATCGACAACATTTGCACTGTCCAATGGAGATGAAAAAACTGC AAATAAGAAAGCGAAAAGAAAATTAGGTTTAGTGGTGCAGAACTTGGCATTTTCACAGCT TGCCTGCATCTCAGTCTTTGTGATAGTTGCATTCATCACTGAGAGGAGTCGTCTCAGAAA TGATCCACTCAACTTCTCTGCTCTGAACATGATATTTGAAATCATCAGTGCATATGGGAA TGTAGGGCTATCCACTGGTTACAGCTGTTCGAGGTTGCAGAAACTGCACCCGGGGAGCAT CTGCCAGGACAAGCCGTACAGCTTGTCCGGATGGTGGAGTGATGAAGGAAAGTTGCTGCT AGTCTTTGTGATGCTCTATGGAAGGCTCAAGGCCTTCACAAAAGGTACAGGTGAATATTG GAGGCTATGGTAAAAGCTGAAGCCTGAACAAAAGCACTTGCAAAGGCAAGTGCATCAAGT GCAGTATATGTAACTATTTAGAGTTCTGCCTGAAAGTTCAGGTTTCTAATTGGGCCATAG TGTATAAAAATACACCCAATATTATTCCTCTTAATACAGTGGTGCGCAATCCTTTAGCGT ATTCCCGAAAAAAAGAACACCCAATATGTTGCAATTGCAATATAGAACTGTTGTTCTCCA A