Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0696400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:29133106:29134569:1 gene:Os06g0696400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 11 description:Xyloglycan endo-transglycosylase precursor. (Os06t0696400-01);Similar to Endotransglucosylase/hydrolase XTH5. (Os06t0696400-02)
Sequence

ATGAGGACGGTGGCGCTTGGCATTGTGGCGATGGCCTGCCTGGTGGCCATTGCGCATGGA
GGCAACTTCTTCCAGGACGCGGAGGTGTCGTGGGGGCAGGGCCGCGGCAAGATCGTCGAT
GGTGGCCGTGGGCTCGACCTCACGCTTGACAGGAGCTCCGGCTCTGGGTTCCAGTCCAAG
AGCGAGTACCTCTTCGGCAAGATCGACATGCAGATCAAGCTCGTCCCCGGCAACTCCGCC
GGCACCGTCACCACCTTCTACTTGTCGTCGCAGGGTTCGACCCACGATGAGATCGACTTC
GAGTTCCTGGGGAACGTGACCGGCGAGCCGTACACGCTGCACACCAACGTGTTCACGCAG
GGGCAGGGGCAGCGCGAGCAGCAGTTCCGCCTCTGGTTCGACCCCACCCAGTCCTTCCAC
ACCTACTCCATCATCTGGAACCCACAGCACGTCATATTCGCGGTGGACGGGACACCGATC
AGGGACTTCAAGAACCACGAGGCCCGTGGCGTGGCGTTCCCCAAGAGCCAGCCGATGCGG
GTGTACGCGAGCCTGTGGAACGCGGACGACTGGGCGACGCAGGGCGGCCGCGTCAAGGCG
GACTGGAGCAAGGCCCCCTTCGTCGCCTCCTTCCGCGACTTCAACGCCGACGCCTGCGTC
TGGTCGAACGGCGCGCAGCGCTGCCCCGTCGGCACAATGGAGACCGTCGCAGCGCCGGCC
GGCGGCAGGAGGGGCGGCGCCGGCGGGTGGTGGAACCAGGAGCTCAGCGACATGAGCTAC
CGCCGCATGAGGTGGGTGCAGAGGAAGTTCATGATCTACAACTACTGCACTGACGCCAAG
CGGTTCCCCCAGGGCACCCCCGCCGAGTGCAAGCTCCGTTGA

Peptide Sequence

PEP ID

Os06t0696400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:29133106:29134569:1 gene:Os06g0696400 transcript:Os06t0696400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 11 description:Xyloglycan endo-transglycosylase precursor. (Os06t0696400-01);Similar to Endotransglucosylase/hydrolase XTH5. (Os06t0696400-02)
Sequence

MRTVALGIVAMACLVAIAHGGNFFQDAEVSWGQGRGKIVDGGRGLDLTLDRSSGSGFQSK
SEYLFGKIDMQIKLVPGNSAGTVTTFYLSSQGSTHDEIDFEFLGNVTGEPYTLHTNVFTQ
GQGQREQQFRLWFDPTQSFHTYSIIWNPQHVIFAVDGTPIRDFKNHEARGVAFPKSQPMR
VYASLWNADDWATQGGRVKADWSKAPFVASFRDFNADACVWSNGAQRCPVGTMETVAAPA
GGRRGGAGGWWNQELSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGTPAECKLR

Transcript Sequence

Transcript ID

Os06t0696400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:29133106:29134569:1 gene:Os06g0696400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 11 description:Xyloglycan endo-transglycosylase precursor. (Os06t0696400-01);Similar to Endotransglucosylase/hydrolase XTH5. (Os06t0696400-02)
Sequence

ATCCCATTCCAGTGACCAATCCACACTGATCCCAGTAGCTCTCATTGTCCTCACGCTTCG
ACTCGCTTGCTAGATCTTTGGGTTCTTGTGTGTTGTGATCGCGCGATGAGGACGGTGGCG
CTTGGCATTGTGGCGATGGCCTGCCTGGTGGCCATTGCGCATGGAGGCAACTTCTTCCAG
GACGCGGAGGTGTCGTGGGGGCAGGGCCGCGGCAAGATCGTCGATGGTGGCCGTGGGCTC
GACCTCACGCTTGACAGGAGCTCCGGCTCTGGGTTCCAGTCCAAGAGCGAGTACCTCTTC
GGCAAGATCGACATGCAGATCAAGCTCGTCCCCGGCAACTCCGCCGGCACCGTCACCACC
TTCTACTTGTCGTCGCAGGGTTCGACCCACGATGAGATCGACTTCGAGTTCCTGGGGAAC
GTGACCGGCGAGCCGTACACGCTGCACACCAACGTGTTCACGCAGGGGCAGGGGCAGCGC
GAGCAGCAGTTCCGCCTCTGGTTCGACCCCACCCAGTCCTTCCACACCTACTCCATCATC
TGGAACCCACAGCACGTCATATTCGCGGTGGACGGGACACCGATCAGGGACTTCAAGAAC
CACGAGGCCCGTGGCGTGGCGTTCCCCAAGAGCCAGCCGATGCGGGTGTACGCGAGCCTG
TGGAACGCGGACGACTGGGCGACGCAGGGCGGCCGCGTCAAGGCGGACTGGAGCAAGGCC
CCCTTCGTCGCCTCCTTCCGCGACTTCAACGCCGACGCCTGCGTCTGGTCGAACGGCGCG
CAGCGCTGCCCCGTCGGCACAATGGAGACCGTCGCAGCGCCGGCCGGCGGCAGGAGGGGC
GGCGCCGGCGGGTGGTGGAACCAGGAGCTCAGCGACATGAGCTACCGCCGCATGAGGTGG
GTGCAGAGGAAGTTCATGATCTACAACTACTGCACTGACGCCAAGCGGTTCCCCCAGGGC
ACCCCCGCCGAGTGCAAGCTCCGTTGAGATCGACACGAGAAGATGATCATAACGTACGCT
ACGCATGCATGATCCGTCATCGATGAAAAAAATGATGAGAAGAGCACGTCAGATGGCGAA
TAATGAATGTGTTTTGTTGCCACGGAGATGTAAATGTAGTATGCATATCGCATTCTTTGA
TATCTTTTTGTAACACGGGGTCGATGTACGTACCAAGTTTGATAAATTTTAGTGAGCTGC
TTTTAGCC