Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0687800-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:28688944:28693950:1 gene:Os06g0687800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pincher (EH-domain containing 4). (Os06t0687800-01)
Sequence	ATGGAGATCGGGCAGCATCCGGCGAGCGGCTACTCCAAGGAGCACCAGAAGACCTACCAG GAGTGGTTCGCCTTCGCCGACTCAGATGGCGACGGGCGCATCACGGGGCCCGACGCCATC AAGTTCTTCGCCATGTCCAAGCTCCCCCGCGCCGACCTCAAGCAGGTTTGGGCAATCGCG GACTCCAAGCGGCAGGGGTACTTAGGTTTCAGCGAATTCGTCACGGCAATGCAGCTTGTC TCTCTGGCGCAAGCGGGGGATGAGATCACTCAAGACAGCCTTAAGCGCGATGACTTGGGC AGCCTGAATCCTCCAACGATGGATGGTTTGGATGCTCTACTTGTGAAATCAAAGCATCAT GCTAAGAGAGTTGATCCAGATATCGATGGATTTCCTCAGGCTCAATCTCCTGCAACGAGC CAATGGTTCAGCTCAAAGTCCTCAAAGAAGATACCCCTGAATGCTGTTACTTCTGTCATT GATGGGTTAAAAAAACTATACATCGAAAAATTAAAGCCTTTGGAAGTTACATACAAATTC AATGATTTTGTATCTCCATTACTGACAAATAGTGATTTTGATGCAAAGCCAATGGTTATG CTTTTAGGTCAATATTCTACAGGGAAAACAACTTTTATAAAACATCTGCTCAGAACAAGC TATCCAGGTGCCCATATTGGACCAGAGCCAACAACTGACAGATTTGTTGTTGTCATGTCA GGACCAGATGAAAGGACTATTCCTGGGAATACCATAGCTGTGCAAGCAGACATGCCTTTC AGTGGTCTTACAACATTTGGAACTGCTTTTTTATCCAAGTTCGAATGCTCTCAGATGCCA CATCCACTACTAGAGCATATCACCTTTGTCGACACACCTGGTGTTCTCTCAGGCGAGAAG CAACGGACGCAACGTAGCTATGATTTCACTGGTGTCACATCATGGTTTGCGGCCAAGTGT GATCTTATTCTTCTTCTGTTTGATCCACATAAGCTTGATATCAGTGATGAGTTCAAACGT GTCATTGGATCTTTACGCGGACATGATGACAAAATACGTGTAGTGCTAAACAAGGCAGAC CAAGTTGACACTCAGCAGCTTATGAGAGTCTATGGTGCATTGATGTGGTCTCTTGGGAAA GTATTGAATACCCCTGAGGTTGCACGTGTTTATATTGGATCATTTAATGACAAACCAGTA AATGAATCAGCTGTTGGTCCAATTGGAAAGGAACTATTTGAGAGAGAGCAAGATGATCTA CTTTCTGATCTGAAAGATATACCGAAGAAAGCTTGTGACCGTCGAATCAATGAATTTGTT AAACGTGCAAGAGCAGCCAAGATTCATGCCCATATAATTGGTCATTTGAAGAAGGAGATG CCTGCGATGATGGGCAAAGCCAAAGCTCAGCAGCGACTTATAGACAATTTGGAGAATGAG TTCGCAAAGGTCCAAAGGGAACAACATCTTCCAGCTGGAGATTTCCCTTATGTGGAGCAT TTCAGAGATGTCCTGGGTGGGTATAGCATTGACAAGTTTGAGAAAATCAAGCCCAAGATG GTGCAGGCGGTGGATGATATGCTTGGATACGACATTCCAGAACTCCTCAAGAACTTCAGG AACCCATACGAGTGA

Peptide Sequence

PEP ID	Os06t0687800-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:28688944:28693950:1 gene:Os06g0687800 transcript:Os06t0687800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pincher (EH-domain containing 4). (Os06t0687800-01)
Sequence	MEIGQHPASGYSKEHQKTYQEWFAFADSDGDGRITGPDAIKFFAMSKLPRADLKQVWAIA DSKRQGYLGFSEFVTAMQLVSLAQAGDEITQDSLKRDDLGSLNPPTMDGLDALLVKSKHH AKRVDPDIDGFPQAQSPATSQWFSSKSSKKIPLNAVTSVIDGLKKLYIEKLKPLEVTYKF NDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMS GPDERTIPGNTIAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEK QRTQRSYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVIGSLRGHDDKIRVVLNKAD QVDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKELFEREQDDL LSDLKDIPKKACDRRINEFVKRARAAKIHAHIIGHLKKEMPAMMGKAKAQQRLIDNLENE FAKVQREQHLPAGDFPYVEHFRDVLGGYSIDKFEKIKPKMVQAVDDMLGYDIPELLKNFR NPYE

Transcript Sequence

Transcript ID	Os06t0687800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:28688944:28693950:1 gene:Os06g0687800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pincher (EH-domain containing 4). (Os06t0687800-01)
Sequence	ACCGCACAGTGAGGCCACGTCGTAGGGTTTTTGCTTGCTTCTCCCGGCTGCAAAGCGGAG CCGCGGCGCGGCCCGGGGACGAGGAGGGAGGGGAGCCATGGAGATCGGGCAGCATCCGGC GAGCGGCTACTCCAAGGAGCACCAGAAGACCTACCAGGAGTGGTTCGCCTTCGCCGACTC AGATGGCGACGGGCGCATCACGGGGCCCGACGCCATCAAGTTCTTCGCCATGTCCAAGCT CCCCCGCGCCGACCTCAAGCAGGTTTGGGCAATCGCGGACTCCAAGCGGCAGGGGTACTT AGGTTTCAGCGAATTCGTCACGGCAATGCAGCTTGTCTCTCTGGCGCAAGCGGGGGATGA GATCACTCAAGACAGCCTTAAGCGCGATGACTTGGGCAGCCTGAATCCTCCAACGATGGA TGGTTTGGATGCTCTACTTGTGAAATCAAAGCATCATGCTAAGAGAGTTGATCCAGATAT CGATGGATTTCCTCAGGCTCAATCTCCTGCAACGAGCCAATGGTTCAGCTCAAAGTCCTC AAAGAAGATACCCCTGAATGCTGTTACTTCTGTCATTGATGGGTTAAAAAAACTATACAT CGAAAAATTAAAGCCTTTGGAAGTTACATACAAATTCAATGATTTTGTATCTCCATTACT GACAAATAGTGATTTTGATGCAAAGCCAATGGTTATGCTTTTAGGTCAATATTCTACAGG GAAAACAACTTTTATAAAACATCTGCTCAGAACAAGCTATCCAGGTGCCCATATTGGACC AGAGCCAACAACTGACAGATTTGTTGTTGTCATGTCAGGACCAGATGAAAGGACTATTCC TGGGAATACCATAGCTGTGCAAGCAGACATGCCTTTCAGTGGTCTTACAACATTTGGAAC TGCTTTTTTATCCAAGTTCGAATGCTCTCAGATGCCACATCCACTACTAGAGCATATCAC CTTTGTCGACACACCTGGTGTTCTCTCAGGCGAGAAGCAACGGACGCAACGTAGCTATGA TTTCACTGGTGTCACATCATGGTTTGCGGCCAAGTGTGATCTTATTCTTCTTCTGTTTGA TCCACATAAGCTTGATATCAGTGATGAGTTCAAACGTGTCATTGGATCTTTACGCGGACA TGATGACAAAATACGTGTAGTGCTAAACAAGGCAGACCAAGTTGACACTCAGCAGCTTAT GAGAGTCTATGGTGCATTGATGTGGTCTCTTGGGAAAGTATTGAATACCCCTGAGGTTGC ACGTGTTTATATTGGATCATTTAATGACAAACCAGTAAATGAATCAGCTGTTGGTCCAAT TGGAAAGGAACTATTTGAGAGAGAGCAAGATGATCTACTTTCTGATCTGAAAGATATACC GAAGAAAGCTTGTGACCGTCGAATCAATGAATTTGTTAAACGTGCAAGAGCAGCCAAGAT TCATGCCCATATAATTGGTCATTTGAAGAAGGAGATGCCTGCGATGATGGGCAAAGCCAA AGCTCAGCAGCGACTTATAGACAATTTGGAGAATGAGTTCGCAAAGGTCCAAAGGGAACA ACATCTTCCAGCTGGAGATTTCCCTTATGTGGAGCATTTCAGAGATGTCCTGGGTGGGTA TAGCATTGACAAGTTTGAGAAAATCAAGCCCAAGATGGTGCAGGCGGTGGATGATATGCT TGGATACGACATTCCAGAACTCCTCAAGAACTTCAGGAACCCATACGAGTGAATGAACAC CTTTAAATTATGACCATGGTTTTCAACTTTTTATCATGATGAGAGACTAGTCATATTCGG AGGGAATAGGGATGCGCTGCATTCCATAGTTTTGCAACTGTCAGAAATCTGGGATTGCTG AGGTTTAGGTCTTGTAACTCTTGTAGGGCGTTTATTGTGGCATACTTTACCTTGTTGTAT AACTGCATGCATAAGAATCTGAGAGCCATTGCTCAATTCTTTTCAACGAAGATGTGAACT GTTGGAAGGCAATGT