Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0687200-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:28652793:28654123:1 gene:Os06g0687200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0687200-01)
Sequence

ATGGAGAACGCCTGCGAGGCCGGCCTGCCGCTGTCGGTGGCCGTGTCGGTGCCGCCGGTG
ATGGTTGACGGGGAGACGGTTCCGAAGGAGGTGGAGGAGTGCGAGGACGAGGAGGAGGAG
GAGGAGTACGCCGGGGATGCGCCGCCGCCGTGGAAGGTGATGGGTTCGGATGATGAGGGC
GAGACGGAGGCCGGCGAGGAGGAGGAGATTGCCGAGGCCGACGGCGAGGAAGAGGCGGCG
GACGTGGAGGAGGTCGAGTACGAGTTCTACGACAGCGACGGCAGCGAGGACGAGGGCGAC
GGCGAGGAGGTTGACCCGGCGGTGGCGAGCGCCGCGCAGTTCGTGCCGGAAGGGCAGTTT
CTTGGGTCGGCGCAGTTCGCCGCCTACGGCTGCGCCGCCGGCTTCATGCGGGTCGCCGCC
GTCGAGGCGGACCCGGCCGACGGCCAAGAGATCCTCGTGCTCTACCGCTACACCCTCCTC
AAGAGGGCATGGAGCGATCCGGCGGGCGTGGAGCTGTCCATGTGGGCGAAGGTGTCGAAG
ATACACCGCCTCCGGTTCATCGTCCCGGCCTCCGGCGACCCGGCGAGCTCGCTGCCATTC
GCCGGGCTATCTCTGTCCCCGCTGATCTACCACAACGACTACGTCGAGGAGCTCGAGACG
CTGTGGTCCAAGCTGGCGGCGCAGGTGCGCGTCCCGCCGGTAGCCACGCGCGTCCAGGTG
ATCGTCGACGTGGGCATCCTCAGGGCGGGGGACAACACGCCGGAGCGCAGGGAGTACATG
CGCGCCGAGCTGGAGGCCAAGAAGGAGATGCCATGGCCGGGGAAGCTCCTCGGCATGGAG
CTGCACGTGCCGGAGCCGGTGGTGGCGGCGGCGGCGTCGTGCAAGAGGGACAGCAGCGAG
GAGGTGTTCGACGACGCGCCAGCGCCGCCGGCGAAGCGGAGGAAGGTGTTCGACGCCGGG
GAGGAGTGCCCCGTCTGCCTGGACGAGCTCGAGGACGGCGTCGTGGCGTGGCCTGGGTGC
TCTGTCGCCCATGTCTTCCATGGCCAATGCTTGGAGACAACTCTCAAGGGGAGCCAGATG
TGCCCTATCTGCAGGCGTGATCTTGGCCTGAAAACCTTGCAGGAGTAG

Peptide Sequence

PEP ID

Os06t0687200-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:28652793:28654123:1 gene:Os06g0687200 transcript:Os06t0687200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0687200-01)
Sequence

MENACEAGLPLSVAVSVPPVMVDGETVPKEVEECEDEEEEEEYAGDAPPPWKVMGSDDEG
ETEAGEEEEIAEADGEEEAADVEEVEYEFYDSDGSEDEGDGEEVDPAVASAAQFVPEGQF
LGSAQFAAYGCAAGFMRVAAVEADPADGQEILVLYRYTLLKRAWSDPAGVELSMWAKVSK
IHRLRFIVPASGDPASSLPFAGLSLSPLIYHNDYVEELETLWSKLAAQVRVPPVATRVQV
IVDVGILRAGDNTPERREYMRAELEAKKEMPWPGKLLGMELHVPEPVVAAAASCKRDSSE
EVFDDAPAPPAKRRKVFDAGEECPVCLDELEDGVVAWPGCSVAHVFHGQCLETTLKGSQM
CPICRRDLGLKTLQE

Transcript Sequence

Transcript ID

Os06t0687200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:28652793:28654123:1 gene:Os06g0687200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0687200-01)
Sequence

AACCTATTTCCCTTTCCCGCCGCTGCTCTCACCGCGAACCCTACGCGCCGCCGCCGCCGC
CGCCGCGGCTGCGCACGTCGAGCAGCCCGCGATGGAGAACGCCTGCGAGGCCGGCCTGCC
GCTGTCGGTGGCCGTGTCGGTGCCGCCGGTGATGGTTGACGGGGAGACGGTTCCGAAGGA
GGTGGAGGAGTGCGAGGACGAGGAGGAGGAGGAGGAGTACGCCGGGGATGCGCCGCCGCC
GTGGAAGGTGATGGGTTCGGATGATGAGGGCGAGACGGAGGCCGGCGAGGAGGAGGAGAT
TGCCGAGGCCGACGGCGAGGAAGAGGCGGCGGACGTGGAGGAGGTCGAGTACGAGTTCTA
CGACAGCGACGGCAGCGAGGACGAGGGCGACGGCGAGGAGGTTGACCCGGCGGTGGCGAG
CGCCGCGCAGTTCGTGCCGGAAGGGCAGTTTCTTGGGTCGGCGCAGTTCGCCGCCTACGG
CTGCGCCGCCGGCTTCATGCGGGTCGCCGCCGTCGAGGCGGACCCGGCCGACGGCCAAGA
GATCCTCGTGCTCTACCGCTACACCCTCCTCAAGAGGGCATGGAGCGATCCGGCGGGCGT
GGAGCTGTCCATGTGGGCGAAGGTGTCGAAGATACACCGCCTCCGGTTCATCGTCCCGGC
CTCCGGCGACCCGGCGAGCTCGCTGCCATTCGCCGGGCTATCTCTGTCCCCGCTGATCTA
CCACAACGACTACGTCGAGGAGCTCGAGACGCTGTGGTCCAAGCTGGCGGCGCAGGTGCG
CGTCCCGCCGGTAGCCACGCGCGTCCAGGTGATCGTCGACGTGGGCATCCTCAGGGCGGG
GGACAACACGCCGGAGCGCAGGGAGTACATGCGCGCCGAGCTGGAGGCCAAGAAGGAGAT
GCCATGGCCGGGGAAGCTCCTCGGCATGGAGCTGCACGTGCCGGAGCCGGTGGTGGCGGC
GGCGGCGTCGTGCAAGAGGGACAGCAGCGAGGAGGTGTTCGACGACGCGCCAGCGCCGCC
GGCGAAGCGGAGGAAGGTGTTCGACGCCGGGGAGGAGTGCCCCGTCTGCCTGGACGAGCT
CGAGGACGGCGTCGTGGCGTGGCCTGGGTGCTCTGTCGCCCATGTCTTCCATGGCCAATG
CTTGGAGACAACTCTCAAGGGGAGCCAGATGTGCCCTATCTGCAGGCGTGATCTTGGCCT
GAAAACCTTGCAGGAGTAGACTGATGTTGCAGACTTGCATTTGAAACAGAATGAATGAAT
GAATTGTAGGTTGTAGTAGCAGATTGATTGTTCTGCAGTTGTAGCCTTCAATTCGATCGA
TTTCTTGTGTG