Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0687000-00
CDS Infomation	cds chromosome:IRGSP-1.0:6:28643856:28647795:-1 gene:Os06g0687000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF292, eukaryotic domain containing protein. (Os06t0687000-00)
Sequence	ATGTTTGGCAGCCTGCTCAACTCCAAGTTCTACAACAAATGCAAGCACGCATTCAAATGC ATTCGTACGCGGCTGGCTCTCATACGGCGGAAGAAGCAGGCGATGATTCGATTCATGAAG AAGGACATAGCCGACCTCCTCACCAATGGCCTCGACACACATGCATTTGGACGGATGGAT GGGCTGATAATTGAGATGAACCATGCTTCTTGCTATGATATGATCGAGCAGTTCTGTGAG TACATTGGTAAACAGCTCAACAGCCTACAGAAACAGGGGGATTGCCCCCAGGAAACTCGG GAAGCTGTGTCGACTCTAATTTTTGCTGCTGCTCGGTTTCCAGATTTGCCAGAACTGTGT GACCTTAGGCATATTTTCACAGAGAGATATGGACATTTTCTTGAGCCTTTTGTTAGCCTT GAGTTTGTTCAGAAGCTGGACAATAAAGTGTTCACTAATGAGGAAAAGATACAAGCCATG CAAAGTGTGTCTGAAGAACTATTGGTTGATTTTGATATCAAAGCATTTAAGATCAAACTA TGGGCCACTCCAGAAACCAAACATGATTTGCCTGCAAAGGACTCAAAGAAACAGGTAGAA CTGGCAGTGCCTTTGTCCAGCAAGAAGGGGGATGATGCTGCTCCATCAGGAAGAAAATCT GAAGCTGCTACTCTTGGCCACAAGAATAAATTGGAAGCGTCCTTAAAACAACAAAAGGAT GTTCATCCTGTTGCTGATGGCATTGACCGGTTACGTGAAAACACCAGGAGACAGCATGCG GATAAATCTGATGGTAAGGGGCATGTGGAGAAACCAGTGTCCGATTCAGAGATGAAAAGA AGGAACATTCAAAAAGAAGTTCAGAAAGCTAACAAAAAAGATGTTCGCCCTTGCGAAAAG GAACTAATGGAAGCGGTGGAGCTAGACCTCAATGGCCTGCCTAAGAAGGAATTTGGTTCA TTGAAAGTTCCTGAAGCAGAAAGCAAGAAGACATTTGCACTAAATGTCAAGCCTAAGAAA GACAATGATCTTGAGAAGGAGAACGAGAGCAACCTTGGTCACCACCACAGATCACATATT CCTTGTGCTGCTGATCATGCAGATTCAGGTCTCAGAACCCTTGGCCTAGATAAGCAGGGG CTTCAATCAGTGAATCCTTTGAATGGTAACACTAAAAACAGGATGCCTCCTTATTCTAAG CTGGATGGATCTACCGGCAAGAAATGTTCTGAAAAGGAAGAGAACACTGGTTGCTTGAAT GCTAGACCACATCATTTAGCAGATAAGGGGAATCCAGTGCAAGATAGACAGCCAGTGCCA GAGAGGGCAGCTTATGTGCGACCTCCTTACATCAAACCAAAACTCAACATGGAAACAGTG AATGATGATCCTGCAGAGCGAGCTGCTAGTGACTACAGCAAACGTGCTATCCCTGAACAA ACAGATCACCTGTCTGACAAAGATCCTCTTCGACCTGTTTCTGTTAGAAGTAAATATGCC AAGCCACCTGCACCTGCTGCTGTCTATGATGAGGCGCCTGCCAATGAAAAGGTTTCAAGC CGAACACCCAGTAGTCACAGAAGACACACAAGCAGGCAGAATGCTGTTAATGATGGCAGT GCCCGGAGAGATGGGTCTAGACAACCTCATGGAGGCAAAGGAATGGATGATGTTAATGGA GAGAATGTTCAGAGAACTCCTAGTAGCCGGCCAAGGCACTCAGGCAGGAGAAATGGAGCT TTGTACACCGAGGACTACGATGGATTCATGCAGCGCCATAAATCAGAAGAGGATGAGGCT GCAATTGACTTTGGTAATCTTTTACCCAGAACTGGAAATGGCCATAGGAGACACAAAAGC CGCAATACTGATGCGCGCAGTGGAGTTGATGAGGAGGAGAGAATGATGGATAAGCTTCTG AGGCACTACAGCAAGAAAGGTTTAGATGCGGAAATCAATCCAGCTCCAACCAACAAAGCA GAAGAACAATCTGAGCAAAAGGGCTCCATGCATCCTCCAGGAAGAGCAATCTCACTGCCA GGGGAATCCGTCTGCCGCGATGAAGATGTGAAGTTTCCTGCCCGGTCTACCTCACTGCAG CCGGACTGTCCCAAAACTGTACATGTGCACCCGAAAATGCCTGACTTTGATGAGCTTGCT GCTCGAGTCAGAGCTCTGAGGAAGGCCTGA

Peptide Sequence

PEP ID	Os06t0687000-00
PEP Infomation	pep chromosome:IRGSP-1.0:6:28643856:28647795:-1 gene:Os06g0687000 transcript:Os06t0687000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF292, eukaryotic domain containing protein. (Os06t0687000-00)
Sequence	MFGSLLNSKFYNKCKHAFKCIRTRLALIRRKKQAMIRFMKKDIADLLTNGLDTHAFGRMD GLIIEMNHASCYDMIEQFCEYIGKQLNSLQKQGDCPQETREAVSTLIFAAARFPDLPELC DLRHIFTERYGHFLEPFVSLEFVQKLDNKVFTNEEKIQAMQSVSEELLVDFDIKAFKIKL WATPETKHDLPAKDSKKQVELAVPLSSKKGDDAAPSGRKSEAATLGHKNKLEASLKQQKD VHPVADGIDRLRENTRRQHADKSDGKGHVEKPVSDSEMKRRNIQKEVQKANKKDVRPCEK ELMEAVELDLNGLPKKEFGSLKVPEAESKKTFALNVKPKKDNDLEKENESNLGHHHRSHI PCAADHADSGLRTLGLDKQGLQSVNPLNGNTKNRMPPYSKLDGSTGKKCSEKEENTGCLN ARPHHLADKGNPVQDRQPVPERAAYVRPPYIKPKLNMETVNDDPAERAASDYSKRAIPEQ TDHLSDKDPLRPVSVRSKYAKPPAPAAVYDEAPANEKVSSRTPSSHRRHTSRQNAVNDGS ARRDGSRQPHGGKGMDDVNGENVQRTPSSRPRHSGRRNGALYTEDYDGFMQRHKSEEDEA AIDFGNLLPRTGNGHRRHKSRNTDARSGVDEEERMMDKLLRHYSKKGLDAEINPAPTNKA EEQSEQKGSMHPPGRAISLPGESVCRDEDVKFPARSTSLQPDCPKTVHVHPKMPDFDELA ARVRALRKA

Transcript Sequence

Transcript ID	Os06t0687000-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:28643856:28647795:-1 gene:Os06g0687000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF292, eukaryotic domain containing protein. (Os06t0687000-00)
Sequence	CCACCACCACCTCCACTTCCTCCTCCCCCACAACCGCCTCCTTCCCCTCCCCCATTGCTC CCTCTCATCTTCTCCTCCTCGTCCTCCTGATGATTTAATGCCATTGGAAGCTTCGCCTGT TGGGTGAAGCGAGGCGGAAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGGAGGA GGGGAGGAGTGGGGGAAGATGTTTGGCAGCCTGCTCAACTCCAAGTTCTACAACAAATGC AAGCACGCATTCAAATGCATTCGTACGCGGCTGGCTCTCATACGGCGGAAGAAGCAGGCG ATGATTCGATTCATGAAGAAGGACATAGCCGACCTCCTCACCAATGGCCTCGACACACAT GCATTTGGACGGATGGATGGGCTGATAATTGAGATGAACCATGCTTCTTGCTATGATATG ATCGAGCAGTTCTGTGAGTACATTGGTAAACAGCTCAACAGCCTACAGAAACAGGGGGAT TGCCCCCAGGAAACTCGGGAAGCTGTGTCGACTCTAATTTTTGCTGCTGCTCGGTTTCCA GATTTGCCAGAACTGTGTGACCTTAGGCATATTTTCACAGAGAGATATGGACATTTTCTT GAGCCTTTTGTTAGCCTTGAGTTTGTTCAGAAGCTGGACAATAAAGTGTTCACTAATGAG GAAAAGATACAAGCCATGCAAAGTGTGTCTGAAGAACTATTGGTTGATTTTGATATCAAA GCATTTAAGATCAAACTATGGGCCACTCCAGAAACCAAACATGATTTGCCTGCAAAGGAC TCAAAGAAACAGGTAGAACTGGCAGTGCCTTTGTCCAGCAAGAAGGGGGATGATGCTGCT CCATCAGGAAGAAAATCTGAAGCTGCTACTCTTGGCCACAAGAATAAATTGGAAGCGTCC TTAAAACAACAAAAGGATGTTCATCCTGTTGCTGATGGCATTGACCGGTTACGTGAAAAC ACCAGGAGACAGCATGCGGATAAATCTGATGGTAAGGGGCATGTGGAGAAACCAGTGTCC GATTCAGAGATGAAAAGAAGGAACATTCAAAAAGAAGTTCAGAAAGCTAACAAAAAAGAT GTTCGCCCTTGCGAAAAGGAACTAATGGAAGCGGTGGAGCTAGACCTCAATGGCCTGCCT AAGAAGGAATTTGGTTCATTGAAAGTTCCTGAAGCAGAAAGCAAGAAGACATTTGCACTA AATGTCAAGCCTAAGAAAGACAATGATCTTGAGAAGGAGAACGAGAGCAACCTTGGTCAC CACCACAGATCACATATTCCTTGTGCTGCTGATCATGCAGATTCAGGTCTCAGAACCCTT GGCCTAGATAAGCAGGGGCTTCAATCAGTGAATCCTTTGAATGGTAACACTAAAAACAGG ATGCCTCCTTATTCTAAGCTGGATGGATCTACCGGCAAGAAATGTTCTGAAAAGGAAGAG AACACTGGTTGCTTGAATGCTAGACCACATCATTTAGCAGATAAGGGGAATCCAGTGCAA GATAGACAGCCAGTGCCAGAGAGGGCAGCTTATGTGCGACCTCCTTACATCAAACCAAAA CTCAACATGGAAACAGTGAATGATGATCCTGCAGAGCGAGCTGCTAGTGACTACAGCAAA CGTGCTATCCCTGAACAAACAGATCACCTGTCTGACAAAGATCCTCTTCGACCTGTTTCT GTTAGAAGTAAATATGCCAAGCCACCTGCACCTGCTGCTGTCTATGATGAGGCGCCTGCC AATGAAAAGGTTTCAAGCCGAACACCCAGTAGTCACAGAAGACACACAAGCAGGCAGAAT GCTGTTAATGATGGCAGTGCCCGGAGAGATGGGTCTAGACAACCTCATGGAGGCAAAGGA ATGGATGATGTTAATGGAGAGAATGTTCAGAGAACTCCTAGTAGCCGGCCAAGGCACTCA GGCAGGAGAAATGGAGCTTTGTACACCGAGGACTACGATGGATTCATGCAGCGCCATAAA TCAGAAGAGGATGAGGCTGCAATTGACTTTGGTAATCTTTTACCCAGAACTGGAAATGGC CATAGGAGACACAAAAGCCGCAATACTGATGCGCGCAGTGGAGTTGATGAGGAGGAGAGA ATGATGGATAAGCTTCTGAGGCACTACAGCAAGAAAGGTTTAGATGCGGAAATCAATCCA GCTCCAACCAACAAAGCAGAAGAACAATCTGAGCAAAAGGGCTCCATGCATCCTCCAGGA AGAGCAATCTCACTGCCAGGGGAATCCGTCTGCCGCGATGAAGATGTGAAGTTTCCTGCC CGGTCTACCTCACTGCAGCCGGACTGTCCCAAAACTGTACATGTGCACCCGAAAATGCCT GACTTTGATGAGCTTGCTGCTCGAGTCAGAGCTCTGAGGAAGGCCTGAGGTTGCACTAGA TTGTCCTGAGCCTGTGCACAAGTTCAGAATTAAGCCGTTCTGACAGTTTCTTCGCTGCAA CTTGCAAGTCACTCTACCTTTGTTCTTTCTTGATATGTGATTGGAATGATTTGTGCATGA GTTCTCCTTTTTCTTTTTCTTTTCAATCTATATGTAGGTTTTTCTTGTTATATAACATTT TCTCTGTACCAGGTGTTTGTCTAGATAGGACACTGGTTGGAGGATTAGCACGATACAGTT GATAGGGGTTTTCAGTTTGTTACTAAATTCAA