Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0680500-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:28345366:28350758:1 gene:Os06g0680500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Glutamate receptor homolog 3.5, GLUTAMATE RECEPTOR-LIKE 3.3 description:Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2. (Os06t0680500-01)
Sequence	TGCGGCGACGACCAGGGGCAATGGGTCGGCGACGTCAACGCCGACCGGACCGTGCTGGCC GGGACCACGCTCAGCCTCATCTCCCAGGACACCAACTGCAGCGGGTTTCTTGGAACAATC GAAGCATTGCAGTTAATGGAGAAAAACGTGGTTGCTGTCATTGGTCCACAATCCTCTGGA ATAGGCCATGTTATTTCACATGTTGTTAATGAGCTACATGTTCCTCTTTTATCGTTCGCA GCAACTGATCCAACACTTTCTGCATCAGAGTATCCGTACTTTTTAAGGAGTACCATGAGT GACTACTTCCAAATGCATGCCGTTGCTAGCATCGTTGACTACTATCAATGGAAAGAGGTC ACTGCTATTTTTGTTGATGATGATTATGGGAGAGGTGCGGTGGCAGCCCTTAGTGATGCG CTTGCATTAAGTCGGGCAAGAATTTCATACAAAGCAGCGGTTCCTCCAAATTCAAATGCA GCTACAATCAATGATGTACTGTTTAGAGCAAACATGATGGAATCAAGAGTGTTTGTTGTG CACGTCAATCCTGACGCAGGGATGAGAATATTTTCTATAGCTAACAAGCTCCGGATGATG GACAGTGGCTATGTCTGGATAGTAACCGATTGGCTAGCTGCTGTCATGGACTCCTCCATG TCTGGAGATCTTAAAACCATGAGCTATATGCAAGGATTAATTGTTCTTCGTCAGCACTTC CCTGATTCTGAAACCAAGAGGGAGTTCATATCTAAATGGAACAATGTAGCTCGTAATAGG AGCATTGCTTCTGGCTTGAACTCATATGGTTTTTATGCTTATGACTCGGTTTGGATTGTT GCCCGTGCTATCGATCAACTTCTCGATAATGGGGAGGAGATAAATTTCTCTGCAGATCCA AGGTTGCATGATTCAATGAACAGCACACTGCGTCTCTCAGCCCTCAAGTTATTTGATAGT GGTGAGCAGTTGCTACAGCAACTTCTCCTCACAAACTTTACAGGCCTAACAGGCCAGCTC CAGTTTGATTCAGACCGCAATTTGGTACGCCCAGCATATGATATCCTTAATATCGGTGGT TCTGTGCCCCATTTGATTGGCTATTGGTCTAATTATTCTGGACTTTCTGTTGCTGCTCCT GAAATTCTATATGAGAAGCAACCAAATACATCTACGAGTGCGCAGCGGCTTAAAAATGTG GTATGGCCGGGTCACTCTGCTTCTAAGCCTAAGGGCTGGGTTTTTCCAAACAATGGGCAG CCTCTGAGAGTTGGTGTTCCAAATAAACCAAGCTTTAAGGAGTTAATGTCACGTGATACT GGCCCTGATAATGTGACTGGGTACTGCATTGAGATATTCAACGCAGCAATTAAACTTCTC CCGTATCCAGTTCCTTGCCAATTCATAGTAATTGGGGATGGTTTAAAGAATCCTAACTAT GATGACATTATTAACATGGTTGCTGCCAATTCCCTTGATGCTGCTGTAGGCGACTTTGCT ATTGTGAGAAACAGGACAAAGATTGCAGAATTCTCACAGCCTTATATTGAGTCAGGGCTT GTGATAGTAGTGCCGGTGAAAGAAGCAAGTTCAAGTGCCTGGGCTTTCCTTAAACCCTTC ACATTAGAAATGTGGTGTGTAACAGGTGTTCTTTTTATTTTTGTCGGAATAGTTGTTTGG ATTCTTGAACATCGGACCAATGAGGAGTTTCGAGGCTCTCCAAGACGGCAGATGATAACA ATATTTTGGTTTAGTTTCTCAACAATGTTTTTTGCACACAGACAGAACACTGTAAGTGCG CTTGGGCGGTTTGTGCTGATCATATGGCTGTTTGTCGTGCTGATCATCAATTCAAGTTAT ACTGCTAGTCTGACGTCGATTCTCACAGTCCAACAGCTTGCAACTGGAATAACTGGGCTT GACAGTTTGCTTTCAAGTGCTTTACCTATTGGATACCAGGCTGGAAAGTTTACTAGAAAT TACCTGATTGAAGAGCTCAATGTTCCTGAATCTCACTTGGTACCGCTAAACACAATCGAC GAGTACGCTGATGCCCTTAATCGTGGACCCAAAGATGGTGGTGTTGCTGCAATTGTTGAT GAGATGCCATATATCGAGATCTTCCTGTCATACCATTGTAACTTCAGAATTGTAGGACAG GAATTCACAAAGGAAGGATGGGGATTCGCATTCCAGAGAGATTCTCCTCTTGCTGCAGAC ATGTCAACTGCAATCCTTCAACTTTCAGAGAGTGGCCAGCTACAAAGAATACATGACGAG TGGTTCTCGCGGTCGAGCTGCAGCTCTGATGACAGTGAAATGGGAGCAACCAGGCTCGGC CTCAGAAGTTTTTGGGGCCTCTTTCTTATGTGCGCTCTGATATGCGTATTCGCTCTCGTG ATGTTCTTTGCAAGAGTCTGCTGGCAATATTCCAAGTACTCAGGTTCTGAAGAACCTGAT GAGCCCAAAGACGATAGTGCTGGCACCGCCGAGATTGCAGCTGAAGCCGTTGCTGAAATG CAGCGGAGGAGGCCAAAGCGTCTTGGTAGCTTCAAAGAACTCATGCAGTTTGTTGATAAA AAGGAAGAAGAAGTCAGGAAATCGATGAAGCGGAGACCAAGTGAGAAAGATAATCAGGGT GTTGGTTCTTCAGATGCGCAGTCAGTGGCTTAA

Peptide Sequence

PEP ID	Os06t0680500-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:28345366:28350758:1 gene:Os06g0680500 transcript:Os06t0680500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Glutamate receptor homolog 3.5, GLUTAMATE RECEPTOR-LIKE 3.3 description:Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2. (Os06t0680500-01)
Sequence	CGDDQGQWVGDVNADRTVLAGTTLSLISQDTNCSGFLGTIEALQLMEKNVVAVIGPQSSG IGHVISHVVNELHVPLLSFAATDPTLSASEYPYFLRSTMSDYFQMHAVASIVDYYQWKEV TAIFVDDDYGRGAVAALSDALALSRARISYKAAVPPNSNAATINDVLFRANMMESRVFVV HVNPDAGMRIFSIANKLRMMDSGYVWIVTDWLAAVMDSSMSGDLKTMSYMQGLIVLRQHF PDSETKREFISKWNNVARNRSIASGLNSYGFYAYDSVWIVARAIDQLLDNGEEINFSADP RLHDSMNSTLRLSALKLFDSGEQLLQQLLLTNFTGLTGQLQFDSDRNLVRPAYDILNIGG SVPHLIGYWSNYSGLSVAAPEILYEKQPNTSTSAQRLKNVVWPGHSASKPKGWVFPNNGQ PLRVGVPNKPSFKELMSRDTGPDNVTGYCIEIFNAAIKLLPYPVPCQFIVIGDGLKNPNY DDIINMVAANSLDAAVGDFAIVRNRTKIAEFSQPYIESGLVIVVPVKEASSSAWAFLKPF TLEMWCVTGVLFIFVGIVVWILEHRTNEEFRGSPRRQMITIFWFSFSTMFFAHRQNTVSA LGRFVLIIWLFVVLIINSSYTASLTSILTVQQLATGITGLDSLLSSALPIGYQAGKFTRN YLIEELNVPESHLVPLNTIDEYADALNRGPKDGGVAAIVDEMPYIEIFLSYHCNFRIVGQ EFTKEGWGFAFQRDSPLAADMSTAILQLSESGQLQRIHDEWFSRSSCSSDDSEMGATRLG LRSFWGLFLMCALICVFALVMFFARVCWQYSKYSGSEEPDEPKDDSAGTAEIAAEAVAEM QRRRPKRLGSFKELMQFVDKKEEEVRKSMKRRPSEKDNQGVGSSDAQSVA

Transcript Sequence

Transcript ID	Os06t0680500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:28345366:28350758:1 gene:Os06g0680500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Glutamate receptor homolog 3.5, GLUTAMATE RECEPTOR-LIKE 3.3 description:Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2. (Os06t0680500-01)
Sequence	AGCAGTAGGTGTACTTGTCAATTCGCCCCCAAGCATTCTGCTCCATCAGTGAGCGCGAGA GCTCGGCCTCCTCTTCCTCCTCCTCGCATGCCCACCTCAGAATCATCTCTGGTTGTGGTG AAACCGATGGTGATGATGATGGTACGAGCACTGTAGCTTCGATCCAGGTCTAGAATCGCA TGTTCTTCCCCCACGCTTTCTTGGATTGCGGCCAAGAATCGATGCGAGCGGCGCCAAGAT TTCGTTCTTGGAGCGGGTCACTCTAGTGCGGCGACGACCAGGGGCAATGGGTCGGCGACG TCAACGCCGACCGGACCGTGCTGGCCGGGACCACGCTCAGCCTCATCTCCCAGGACACCA ACTGCAGCGGGTTTCTTGGAACAATCGAAGCATTGCAGTTAATGGAGAAAAACGTGGTTG CTGTCATTGGTCCACAATCCTCTGGAATAGGCCATGTTATTTCACATGTTGTTAATGAGC TACATGTTCCTCTTTTATCGTTCGCAGCAACTGATCCAACACTTTCTGCATCAGAGTATC CGTACTTTTTAAGGAGTACCATGAGTGACTACTTCCAAATGCATGCCGTTGCTAGCATCG TTGACTACTATCAATGGAAAGAGGTCACTGCTATTTTTGTTGATGATGATTATGGGAGAG GTGCGGTGGCAGCCCTTAGTGATGCGCTTGCATTAAGTCGGGCAAGAATTTCATACAAAG CAGCGGTTCCTCCAAATTCAAATGCAGCTACAATCAATGATGTACTGTTTAGAGCAAACA TGATGGAATCAAGAGTGTTTGTTGTGCACGTCAATCCTGACGCAGGGATGAGAATATTTT CTATAGCTAACAAGCTCCGGATGATGGACAGTGGCTATGTCTGGATAGTAACCGATTGGC TAGCTGCTGTCATGGACTCCTCCATGTCTGGAGATCTTAAAACCATGAGCTATATGCAAG GATTAATTGTTCTTCGTCAGCACTTCCCTGATTCTGAAACCAAGAGGGAGTTCATATCTA AATGGAACAATGTAGCTCGTAATAGGAGCATTGCTTCTGGCTTGAACTCATATGGTTTTT ATGCTTATGACTCGGTTTGGATTGTTGCCCGTGCTATCGATCAACTTCTCGATAATGGGG AGGAGATAAATTTCTCTGCAGATCCAAGGTTGCATGATTCAATGAACAGCACACTGCGTC TCTCAGCCCTCAAGTTATTTGATAGTGGTGAGCAGTTGCTACAGCAACTTCTCCTCACAA ACTTTACAGGCCTAACAGGCCAGCTCCAGTTTGATTCAGACCGCAATTTGGTACGCCCAG CATATGATATCCTTAATATCGGTGGTTCTGTGCCCCATTTGATTGGCTATTGGTCTAATT ATTCTGGACTTTCTGTTGCTGCTCCTGAAATTCTATATGAGAAGCAACCAAATACATCTA CGAGTGCGCAGCGGCTTAAAAATGTGGTATGGCCGGGTCACTCTGCTTCTAAGCCTAAGG GCTGGGTTTTTCCAAACAATGGGCAGCCTCTGAGAGTTGGTGTTCCAAATAAACCAAGCT TTAAGGAGTTAATGTCACGTGATACTGGCCCTGATAATGTGACTGGGTACTGCATTGAGA TATTCAACGCAGCAATTAAACTTCTCCCGTATCCAGTTCCTTGCCAATTCATAGTAATTG GGGATGGTTTAAAGAATCCTAACTATGATGACATTATTAACATGGTTGCTGCCAATTCCC TTGATGCTGCTGTAGGCGACTTTGCTATTGTGAGAAACAGGACAAAGATTGCAGAATTCT CACAGCCTTATATTGAGTCAGGGCTTGTGATAGTAGTGCCGGTGAAAGAAGCAAGTTCAA GTGCCTGGGCTTTCCTTAAACCCTTCACATTAGAAATGTGGTGTGTAACAGGTGTTCTTT TTATTTTTGTCGGAATAGTTGTTTGGATTCTTGAACATCGGACCAATGAGGAGTTTCGAG GCTCTCCAAGACGGCAGATGATAACAATATTTTGGTTTAGTTTCTCAACAATGTTTTTTG CACACAGACAGAACACTGTAAGTGCGCTTGGGCGGTTTGTGCTGATCATATGGCTGTTTG TCGTGCTGATCATCAATTCAAGTTATACTGCTAGTCTGACGTCGATTCTCACAGTCCAAC AGCTTGCAACTGGAATAACTGGGCTTGACAGTTTGCTTTCAAGTGCTTTACCTATTGGAT ACCAGGCTGGAAAGTTTACTAGAAATTACCTGATTGAAGAGCTCAATGTTCCTGAATCTC ACTTGGTACCGCTAAACACAATCGACGAGTACGCTGATGCCCTTAATCGTGGACCCAAAG ATGGTGGTGTTGCTGCAATTGTTGATGAGATGCCATATATCGAGATCTTCCTGTCATACC ATTGTAACTTCAGAATTGTAGGACAGGAATTCACAAAGGAAGGATGGGGATTCGCATTCC AGAGAGATTCTCCTCTTGCTGCAGACATGTCAACTGCAATCCTTCAACTTTCAGAGAGTG GCCAGCTACAAAGAATACATGACGAGTGGTTCTCGCGGTCGAGCTGCAGCTCTGATGACA GTGAAATGGGAGCAACCAGGCTCGGCCTCAGAAGTTTTTGGGGCCTCTTTCTTATGTGCG CTCTGATATGCGTATTCGCTCTCGTGATGTTCTTTGCAAGAGTCTGCTGGCAATATTCCA AGTACTCAGGTTCTGAAGAACCTGATGAGCCCAAAGACGATAGTGCTGGCACCGCCGAGA TTGCAGCTGAAGCCGTTGCTGAAATGCAGCGGAGGAGGCCAAAGCGTCTTGGTAGCTTCA AAGAACTCATGCAGTTTGTTGATAAAAAGGAAGAAGAAGTCAGGAAATCGATGAAGCGGA GACCAAGTGAGAAAGATAATCAGGGTGTTGGTTCTTCAGATGCGCAGTCAGTGGCTTAAC CGTAGAAGATTCTTTCAGGTTCAGTCCTTCCTTCGTTCTGCACATCACAAAAATGAAAAA CATACTAAAGTAGATAACAGCAGTATACTTGTAGAATCTAGAAATCCATTTTTTCTCAGG ATTACTCGAATTATGTCTGATATATACTCTTAATATGTTCAGCAATTTTCCCATTTTTTT CCCATTTGGGAATGCCATGAACTGTGAAAAGTGTATCTGTTTAGGTGCTTCTCTGAAGCA CATGTA