Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0677800-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:28158519:28164557:-1 gene:Os06g0677800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 17 description:Similar to P-167-1_1 (Fragment). (Os06t0677800-01)
Sequence	ATGAGGCTTTCGTCGTCGTCCGGCAGCGTCCTCCCGGCTCAGGCGGCGTCGCCGGAAGCT GTAGAAGAACAAAAATGCCTGAATTCGGAGCTCTGGCATGCGTGTGCCGGTCCCCTTGTT TCGTTGCCTGCAGTGGGTAGCCGAGTGGTTTATTTCCCACAGGGTCACAGCGAACAGGTA GCTGCATCAACAAATAAAGAAATGGAGTCTCAGATCCCCAATTATCCTAACTTGCCTCCA CAACTTATTTGCCAACTTCACAATGTGACGATGCATGCAGATGCAGAAACAGATGAGGTT TACGCTCAGATGACGCTACAACCACTTAGCCCGCAAGAGCTCAAGGACCCATATCTACCA GCTGAATTAGGTTCTGCCAACAAACAGCCAACGAATTATTTTTGCAAAACATTAACGGCA AGTGACACAAGTACGCATGGCGGATTCTCTGTTCCCCGTCGAGCAGCTGAGAAAGTGTTC CCTCCGCTGGATTTTACTCAGCAGCCTCCAGCACAGGAGTTAATTGCAAAAGATCTTCAT GGCAATGAGTGGAAGTTTCGTCATATCTTTCGTGGTCAGCCAAAGCGACACCTTCTAACT ACAGGCTGGAGCGTCTTTGTAAGTGCAAAGAGACTTGTCGCCGGGGATTCTGTCCTATTT ATCTGGAATGACAACAACCAGCTTCTTCTGGGAATTCGTCGAGCTAACCGCCCACAAACT GTTATGCCATCTTCAGTCCTATCTAGTGATAGCATGCATATTGGTCTTCTTGCTGCGGCT GCTCATGCTGCTTCAACAAATAGCCGGTTTACAATTTTTTATAACCCAAGAGCAAGCCCT TCAGAGTTTGTTATCCCACTTTCTAAATATGTTAAGGCTGTATATCATACCCGTATATCT GTGGGCATGCGTTTCAGGATGCTTTTTGAGACAGAAGAGTCAAGTGTACGGAGATACATG GGCACGATAACAGGAATTAGTGATCTTGATGCTGCTCGTTGGCCAAACTCACATTGGCGT TCTGTAAAGGTTGGCTGGGATGAATCAACTGCCGGAGAGAGGCAGCCAAGGGTGTCGCTT TGGGAGATTGAGCCCTTGACAACTTTCCCAATGTACCCATCTCCTTTTCCACTCAGACTG AAGCGTCCATGGCCAACAGGCTTGCCTTCATTACATGGTGGTAAGGATGACGACTTGACT TCTTCTCTCATGTGGCTCCGAGACAGCGCAAATCCTGGTTTCCAATCATTGAATTTCGGG GGTCTCGGTATGAATCCTTGGATGCAGCCAAGGTTTGATGCTTCCTTACTTGGTCTGCAA CCTGACATGTATCAAACGATAGCTGCGACTGCTTTCCAGGACCCAACAAAGCAGGTCTCT CCCACGATATTGCAGTTCCAGCAGCCGCAGAACATAGGTGGCAGAGCTAATACACTTCTG CCAAGTCAGATTTTGCAGCAAGTGCAGCCTCAGTTTCAGCAGCAGCAATACCTCCAAAAC ATCAACGAGACCACAATCCAAGGGCATGCTCAGTCTGAGTTCCTTCAGCAGCAGCTCCAA CGCTGCCAGTCGTTTACTGAGCAGAAGCCACAGCTGCAAACCCAGCAACAACAGCAAGAA TCACAGCAACAACAGCAGCAGCAATCGCAGTGTATGCAAGTCCCACAACATCAGCAAATG CAACAGCAGAAGAACATGACCAACTATCAGTCTGTACCTAATGCATTGTCACCGTTTTCT CAACTCTCCTCTCCTTCTCAGTCTTCACCTATGACACTGCAAACAGTATTACCATTCTCC CAGCCACAGAGCTATCCAGACACGAGTATGAGCTCATTGTCACCATCCAACACATCCACC ATGCATAATGCATTGAGGCCATTTTCATCGGAAGCACCTTCGCACCTAAGCATGCCAAGA CCGACTGCAGTACCTGTCCCTGACCCATGGTCATCGAAGCGAGTTGCAGTGGAGTCTTTG CTTCCCTCTCGTCCTCAGGTTACATCGCAGATGGAGCAGTTGGACTCAACAGCACCTAGT ATACCACAAAGCTCTGCGTTGGCGCCGCTTCCTGGAAGAGGATGCTTGGTGGATCAAGAT GGGAACTCTGATCCTCAAAACCATCTGTTATTTGGCGTTAACATAGATTCACAGTCACTT CTAATGCAAGGTGGCATCCCAAGCCTCCAGGGTGAGAATGATTCGACGGCAATTCCTTAT TCCACCTCCAATTTCCTGAGCCCGTCGCAGAATGATTTCCCCTTGGATCAAACACTAAGT AGTGCAGACTGCTTAGATGAATCAGGATATGTGCCGTGTTCACAGAATTCTGATCAAGTG ATTAATCGACCACCTGCGACCTTTGTGAAGGTTTACAAATCGGGAACCTATGGAAGGTCA CTTGATATCACTAGATTTAGTAGCTATCATGAACTTCGTAGAGAACTAGGGCGCCTATTT GGCCTTGAGGGCCAGTTGGAAAACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTCGAC CGAGAGGATGATGTCCTCCTCGTTGGCGACGACCCTTGGCAGGAATTCGTGAATAGCGTC TCCTGCATAAAGATACTTTCACCACAGGAGGTGCAGCAGATGGGCAAGCCCTTTGAGCTT TTGAGCTCGGCTCCCGGAAAGAGGCTAGGTAGCAGCTGTGATGACTATGTGAGCAGGCAG GAATCAAGAAGCCTGAGCACAGGAATTGCATCTGTCGGCTCAGTTGAATTCTGA

Peptide Sequence

PEP ID	Os06t0677800-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:28158519:28164557:-1 gene:Os06g0677800 transcript:Os06t0677800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 17 description:Similar to P-167-1_1 (Fragment). (Os06t0677800-01)
Sequence	MRLSSSSGSVLPAQAASPEAVEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV AASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLP AELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLH GNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQT VMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKAVYHTRIS VGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVKVGWDESTAGERQPRVSL WEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLHGGKDDDLTSSLMWLRDSANPGFQSLNFG GLGMNPWMQPRFDASLLGLQPDMYQTIAATAFQDPTKQVSPTILQFQQPQNIGGRANTLL PSQILQQVQPQFQQQQYLQNINETTIQGHAQSEFLQQQLQRCQSFTEQKPQLQTQQQQQE SQQQQQQQSQCMQVPQHQQMQQQKNMTNYQSVPNALSPFSQLSSPSQSSPMTLQTVLPFS QPQSYPDTSMSSLSPSNTSTMHNALRPFSSEAPSHLSMPRPTAVPVPDPWSSKRVAVESL LPSRPQVTSQMEQLDSTAPSIPQSSALAPLPGRGCLVDQDGNSDPQNHLLFGVNIDSQSL LMQGGIPSLQGENDSTAIPYSTSNFLSPSQNDFPLDQTLSSADCLDESGYVPCSQNSDQV INRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVD REDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPFELLSSAPGKRLGSSCDDYVSRQ ESRSLSTGIASVGSVEF

Transcript Sequence

Transcript ID	Os06t0677800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:28158519:28164557:-1 gene:Os06g0677800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 17 description:Similar to P-167-1_1 (Fragment). (Os06t0677800-01)
Sequence	AGGAAGCTGCAAGAGGAACTGAGGAAGGAAGCAAGAAAGCAAACCAAACCAAACCAAACC AAGAAGCAAATCTCAGTTGCAACTCTTGAGCTCAGAAGAAGTTGCAACAGAAGAAGGAGG GAGAAGGGAAGCATCTCAGCTAGCTAGGCAGGAAGCATGCTCCTAGCCTCCCTCTCCGGC TGCGGCGGCGGCGGCGGCGGTCGGATCTGCCGGAGAGCGGCGGCCGGGGAGCCCAGAGCT GAGAGCTAACCGTGCAGACCTCGCGGCCGCGAGATCTGACCACGCGACTCCTCGGATCAA GCGGTGTCGCCTCCCGCAGCAGCATTTCCCCCCCCCCCCCCCCCCCCGAAGATCACAGCC TTTTTTTCCACTGGTTCTTGCTGGTCTTGGAAGTGGGGAAAAAAAATTCTCATCACCTCG TCGATGGAGAAGCTTACGACGCTTGCTCGGTAGATTTGATTTTTCTTTTTCTTCTTCTTC CGGGGGAAGCGTAATTGCGAAACAGCGAAAGAAGAAGTGTTGGTGAGTTGGCGAAACTGA GAAAGCGATGGTTTTTGGGAAGGCGCTGTGATTTGGCCTAAAAAGGAGGAATCTTTCCTT CGTTCTCTCCTTCCTTCCCCAGCTTCGTGCACGCTCTTATATTGCATTTCAGATCGGTCT TGTGATTGGTCTTTTGGAGAGAGAGAGAGAGAGAGAAGAAAAATGAGGCTTTCGTCGTCG TCCGGCAGCGTCCTCCCGGCTCAGGCGGCGTCGCCGGAAGCTGTAGAAGAACAAAAATGC CTGAATTCGGAGCTCTGGCATGCGTGTGCCGGTCCCCTTGTTTCGTTGCCTGCAGTGGGT AGCCGAGTGGTTTATTTCCCACAGGGTCACAGCGAACAGGTAGCTGCATCAACAAATAAA GAAATGGAGTCTCAGATCCCCAATTATCCTAACTTGCCTCCACAACTTATTTGCCAACTT CACAATGTGACGATGCATGCAGATGCAGAAACAGATGAGGTTTACGCTCAGATGACGCTA CAACCACTTAGCCCGCAAGAGCTCAAGGACCCATATCTACCAGCTGAATTAGGTTCTGCC AACAAACAGCCAACGAATTATTTTTGCAAAACATTAACGGCAAGTGACACAAGTACGCAT GGCGGATTCTCTGTTCCCCGTCGAGCAGCTGAGAAAGTGTTCCCTCCGCTGGATTTTACT CAGCAGCCTCCAGCACAGGAGTTAATTGCAAAAGATCTTCATGGCAATGAGTGGAAGTTT CGTCATATCTTTCGTGGTCAGCCAAAGCGACACCTTCTAACTACAGGCTGGAGCGTCTTT GTAAGTGCAAAGAGACTTGTCGCCGGGGATTCTGTCCTATTTATCTGGAATGACAACAAC CAGCTTCTTCTGGGAATTCGTCGAGCTAACCGCCCACAAACTGTTATGCCATCTTCAGTC CTATCTAGTGATAGCATGCATATTGGTCTTCTTGCTGCGGCTGCTCATGCTGCTTCAACA AATAGCCGGTTTACAATTTTTTATAACCCAAGAGCAAGCCCTTCAGAGTTTGTTATCCCA CTTTCTAAATATGTTAAGGCTGTATATCATACCCGTATATCTGTGGGCATGCGTTTCAGG ATGCTTTTTGAGACAGAAGAGTCAAGTGTACGGAGATACATGGGCACGATAACAGGAATT AGTGATCTTGATGCTGCTCGTTGGCCAAACTCACATTGGCGTTCTGTAAAGGTTGGCTGG GATGAATCAACTGCCGGAGAGAGGCAGCCAAGGGTGTCGCTTTGGGAGATTGAGCCCTTG ACAACTTTCCCAATGTACCCATCTCCTTTTCCACTCAGACTGAAGCGTCCATGGCCAACA GGCTTGCCTTCATTACATGGTGGTAAGGATGACGACTTGACTTCTTCTCTCATGTGGCTC CGAGACAGCGCAAATCCTGGTTTCCAATCATTGAATTTCGGGGGTCTCGGTATGAATCCT TGGATGCAGCCAAGGTTTGATGCTTCCTTACTTGGTCTGCAACCTGACATGTATCAAACG ATAGCTGCGACTGCTTTCCAGGACCCAACAAAGCAGGTCTCTCCCACGATATTGCAGTTC CAGCAGCCGCAGAACATAGGTGGCAGAGCTAATACACTTCTGCCAAGTCAGATTTTGCAG CAAGTGCAGCCTCAGTTTCAGCAGCAGCAATACCTCCAAAACATCAACGAGACCACAATC CAAGGGCATGCTCAGTCTGAGTTCCTTCAGCAGCAGCTCCAACGCTGCCAGTCGTTTACT GAGCAGAAGCCACAGCTGCAAACCCAGCAACAACAGCAAGAATCACAGCAACAACAGCAG CAGCAATCGCAGTGTATGCAAGTCCCACAACATCAGCAAATGCAACAGCAGAAGAACATG ACCAACTATCAGTCTGTACCTAATGCATTGTCACCGTTTTCTCAACTCTCCTCTCCTTCT CAGTCTTCACCTATGACACTGCAAACAGTATTACCATTCTCCCAGCCACAGAGCTATCCA GACACGAGTATGAGCTCATTGTCACCATCCAACACATCCACCATGCATAATGCATTGAGG CCATTTTCATCGGAAGCACCTTCGCACCTAAGCATGCCAAGACCGACTGCAGTACCTGTC CCTGACCCATGGTCATCGAAGCGAGTTGCAGTGGAGTCTTTGCTTCCCTCTCGTCCTCAG GTTACATCGCAGATGGAGCAGTTGGACTCAACAGCACCTAGTATACCACAAAGCTCTGCG TTGGCGCCGCTTCCTGGAAGAGGATGCTTGGTGGATCAAGATGGGAACTCTGATCCTCAA AACCATCTGTTATTTGGCGTTAACATAGATTCACAGTCACTTCTAATGCAAGGTGGCATC CCAAGCCTCCAGGGTGAGAATGATTCGACGGCAATTCCTTATTCCACCTCCAATTTCCTG AGCCCGTCGCAGAATGATTTCCCCTTGGATCAAACACTAAGTAGTGCAGACTGCTTAGAT GAATCAGGATATGTGCCGTGTTCACAGAATTCTGATCAAGTGATTAATCGACCACCTGCG ACCTTTGTGAAGGTTTACAAATCGGGAACCTATGGAAGGTCACTTGATATCACTAGATTT AGTAGCTATCATGAACTTCGTAGAGAACTAGGGCGCCTATTTGGCCTTGAGGGCCAGTTG GAAAACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTCGACCGAGAGGATGATGTCCTC CTCGTTGGCGACGACCCTTGGCAGGAATTCGTGAATAGCGTCTCCTGCATAAAGATACTT TCACCACAGGAGGTGCAGCAGATGGGCAAGCCCTTTGAGCTTTTGAGCTCGGCTCCCGGA AAGAGGCTAGGTAGCAGCTGTGATGACTATGTGAGCAGGCAGGAATCAAGAAGCCTGAGC ACAGGAATTGCATCTGTCGGCTCAGTTGAATTCTGAAGCAAGGGCGCTAACGAGCCCTTC AATCAAATCTAGCCTGTTACCTATGTTTCTGCAGTTTTTCTTCCCCTAGTTTTGAGACCT GGAACTGAAAGAACATAGATCCATGCTTAGCTAAGTTATGTACCATCTAATAATTATGCT ATATGATATCAAATTCCAAGTAGAAACTATCAACTTTTGGTATATATATATATACCAAAA CTTTGTTCCATGAAACACTAATCCTGTGAATGTAGGCCATCTAAATTATCAGGCTCACCG CGAAGTTTAGC