Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0677400-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:28139204:28142549:1 gene:Os06g0677400 gene_biotype:protein_coding transcript_biotype:protein_coding description:3-hydroxyisobutyrate dehydrogenase domain containing protein. (Os06t0677400-01);Similar to 3-hydroxyisobutyrate dehydrogenase. (Os06t0677400-02)
Sequence

ATGGGGGTTGTTGGATGGAGGGTTCGTTCGATGGTCCAACATTTGGGTTGGAACTGTCGC
CGGGGCCTCTCGTCCGCTGCGGTTCAATCTCAGTTGGAGAATGTAGGATTCATAGGACTG
GGAAATATGGGTGCCCATATGGCGAGGAACCTGGTAATGGCTGGATATAAAGTGACTGTT
CATGATGTCAATGAGAATACCATGAAGAAATTCTCGGATGATGGAATTCCCACAAAACTG
TCTCCACTTGAAGTGTCCAAGTCTAGTGATGTCGTAATTACGATGCTGCCTTCGTCTGCC
CATGTATTAGATGTATACAATGGACGGAATGGTTTGCTTGCTAATGGGGGCTGCCTTGGA
CCTTGGTTGTATATAGATTCATCCACAGTTGATCCACAAACATCAAGGAAAATATCCATG
GACATCTCAAGATGCACTTTGAAAGAAAAGAAAGCCTATGCTGAAAAACCGATGATGCTG
GATGCTCCTGTTTCCGGAGGTGTTCCTGCTGCAGAAGCTGGGAAACTCACTTTCATGGTA
TTCAATCCTTGCTTTTTCGTAACTTTGGTGTTATCACCAGGAATATACTTTGGTCGGACA
GTTGCTACATTAGATGGAAGGATTTCTGTCTTATTTTGGTGCAAAGGAATGATATATAGG
TAG

Peptide Sequence

PEP ID

Os06t0677400-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:28139204:28142549:1 gene:Os06g0677400 transcript:Os06t0677400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:3-hydroxyisobutyrate dehydrogenase domain containing protein. (Os06t0677400-01);Similar to 3-hydroxyisobutyrate dehydrogenase. (Os06t0677400-02)
Sequence

MGVVGWRVRSMVQHLGWNCRRGLSSAAVQSQLENVGFIGLGNMGAHMARNLVMAGYKVTV
HDVNENTMKKFSDDGIPTKLSPLEVSKSSDVVITMLPSSAHVLDVYNGRNGLLANGGCLG
PWLYIDSSTVDPQTSRKISMDISRCTLKEKKAYAEKPMMLDAPVSGGVPAAEAGKLTFMV
FNPCFFVTLVLSPGIYFGRTVATLDGRISVLFWCKGMIYR

Transcript Sequence

Transcript ID

Os06t0677400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:28139204:28142549:1 gene:Os06g0677400 gene_biotype:protein_coding transcript_biotype:protein_coding description:3-hydroxyisobutyrate dehydrogenase domain containing protein. (Os06t0677400-01);Similar to 3-hydroxyisobutyrate dehydrogenase. (Os06t0677400-02)
Sequence

ATTCCCAACTCTTCGGCGGCTCACTCGATCAGCCTCTCCTCCTCTCTACCTGCCCCGCAT
CTCGAATATTTGGCCAGTAAAGCGAAAGTGAAGGGTTTGCAAATCGGCTAGCAGTTCAGA
GAAAATGGGGGTTGTTGGATGGAGGGTTCGTTCGATGGTCCAACATTTGGGTTGGAACTG
TCGCCGGGGCCTCTCGTCCGCTGCGGTTCAATCTCAGTTGGAGAATGTAGGATTCATAGG
ACTGGGAAATATGGGTGCCCATATGGCGAGGAACCTGGTAATGGCTGGATATAAAGTGAC
TGTTCATGATGTCAATGAGAATACCATGAAGAAATTCTCGGATGATGGAATTCCCACAAA
ACTGTCTCCACTTGAAGTGTCCAAGTCTAGTGATGTCGTAATTACGATGCTGCCTTCGTC
TGCCCATGTATTAGATGTATACAATGGACGGAATGGTTTGCTTGCTAATGGGGGCTGCCT
TGGACCTTGGTTGTATATAGATTCATCCACAGTTGATCCACAAACATCAAGGAAAATATC
CATGGACATCTCAAGATGCACTTTGAAAGAAAAGAAAGCCTATGCTGAAAAACCGATGAT
GCTGGATGCTCCTGTTTCCGGAGGTGTTCCTGCTGCAGAAGCTGGGAAACTCACTTTCAT
GGTATTCAATCCTTGCTTTTTCGTAACTTTGGTGTTATCACCAGGAATATACTTTGGTCG
GACAGTTGCTACATTAGATGGAAGGATTTCTGTCTTATTTTGGTGCAAAGGAATGATATA
TAGGTAGGTGGTTCAGAAGAAGCATATCTAGCAGCAAAACCCTTACTTCTCTCAATGGGC
AAAAAAACAATATATTGTGGCGGGGCTGGAAATGGCTCGGTTGCAAAGATTTGTAACAAC
ATGGCAATGGCCATCAGCATGCTTGGAGTCTCCGAAGCTTTTGCTCTTGGTCAGAATCTC
GGCATCAAAGCTAGCGTTCTTACAGACATATTCAACTGCTCAAGTGCCCGCTGCTGGAGC
AGTGACACATATAACCCAGTTCCTGGAGTAATGATGGATGTGCCATCATCGAGGAACTAT
GATGGTGGTTTCACCTCCAAACTAATGACCAAAGATTTGGATTTGGCCATGGCCTCTGCA
TCTGGAGTTGGCTTCAATTGTCCCTTTGGTTCTCAGGCACTTGAAATTTACCGAAAGCTA
TGTGCTGATGGCTGTGAACTCAAGGACTTCTCATGTGCATTTCGCCACAACTATGCTGGC
AAAGATGAAAATTGATCTTGTAGCTCTGCCACCTAACTTGCCACCTGTTAAAATAAATAA
AGCAATAAAAAGTTGTGTGATTGAAGTGTACTCAGGCAAAGTTGGACTATCCTTTGTAAA
GTGAATTATCTTAATTGACGCCTTTCAGCCTGTAAAATCAAATCCATTGGCTCAAAGCAA
AGCTTTCTCTGACATTTGTACTAAATTGATTTTACTGAGGTATTGTCCCTCTTGTATTTT
CAGGGCTGTGTCAACATAAAGTGTACTCTTGCTGCATTCGGACCAAGTATTCCATACTAT
GTGTAACAATGTAATTAGACATAGGCATCAAGTTCTGTATGTATGATCAGAAAATGTACA
CCAAGGAGAGCCCTGTGCTGTTGTGCACATATTGACATATTGTACAAAGAAATGTAGCAA
TCGCATTGCCAAGCAAATGACTTGATGAATAAGAACATCAGATTTGGCAGAATAAATGTA
GGTTTCATT