Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0671800-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:27875114:27878195:1 gene:Os06g0671800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to patellin-5. (Os06t0671800-01)
Sequence

ATGGCGGTGGAGGTCGTGTCTGAGGGTGCGGCGGCCGCCGCGGCGGAGGTGGCGGCGCCG
GAGACGAAGGAGGTGACCGCGAAGGCGGCGGCGGATGAGGCGGTGACGCTGGCTGCCGTC
GTGTCCAAGAACGCGTCGTTCAGGGAGGAGAGCAACTTCCTGGATGATCTCAAGGACGGC
GAGAGGAAGGCGTTGGCTGAGCTCCGTGCCAAGGTTGAGGAGGCCATCGTCGACGGCAAG
CTGTTCGATGACGGCAAGGTGGAGGCCAAGAAGAAGGCCGCGGCGGCGGAGGAGGAGAAG
GCGGTGGAGGAGGCCGCCGGTGAGAAGAAAGATGGCGAGGAGAAGAAAGAGGAGGAGGAG
CCGGTGACGGAGGAGAAGAAGGAAGAGGAGCAAGGCGAGGAGGAGGAGGAGCCCAAGAAA
GAGGAAGCCGACGAGGGCGAGAAGGAGGAGAAGCCGGCGGAGGAGGAGGCGGCGGCGGTT
GTGGACAAGGACATCGCTCTGTGGGGCGTGCCGCTGCTGCCGAGCAAGGGCGACGACGCC
ACCGACGTCGTCCTCCTCAAGTTCCTCCGCGCGCGCGACTTCAAGGCCGGCGCCGCCTTC
GACATGCTCCGCAAGACGCTCCACTGGCGCAGGGAGTGGAAGGGCTTCGCCGCCGGCACC
GACGACGACGACGACGGCGAGGCGCTCCCGGCGGAGCTCGCCGACGCGTGCTACCTCGAC
GGCGCGGACAGGGAGGGCCACCCGGTGTGCTACAACGCGCTCGGCGTGTTCGCCGACGAC
GCCGTGTACAAGAAGGCGCTCGGCACGGAGGAAGGCAAGGCGAGGTTCCTCCGGTGGAGG
GTGCGCGCCATGGAGAGCCACGTGGCCAAGCTCGACCTCAGGCCCGGCGGCGTCGCGTCG
CTGCTGCAGGTGACGGACCTCAAGAACTCGCCGGGGCCGGCCAAGAAGGACCTCCGCGTC
GCCATGAAGCAGGTGCTCGACCTCTTCCAGGACAACTACCCTGAGCTCGTCGCAAGAAAC
GTGAGTACTCCTTGTGATTTTAATAAATTTCTCTTCCTGCCCAATTTAGATCCAAATGTG
TGTCGGATTTAA

Peptide Sequence

PEP ID

Os06t0671800-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:27875114:27878195:1 gene:Os06g0671800 transcript:Os06t0671800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to patellin-5. (Os06t0671800-01)
Sequence

MAVEVVSEGAAAAAAEVAAPETKEVTAKAAADEAVTLAAVVSKNASFREESNFLDDLKDG
ERKALAELRAKVEEAIVDGKLFDDGKVEAKKKAAAAEEEKAVEEAAGEKKDGEEKKEEEE
PVTEEKKEEEQGEEEEEPKKEEADEGEKEEKPAEEEAAAVVDKDIALWGVPLLPSKGDDA
TDVVLLKFLRARDFKAGAAFDMLRKTLHWRREWKGFAAGTDDDDDGEALPAELADACYLD
GADREGHPVCYNALGVFADDAVYKKALGTEEGKARFLRWRVRAMESHVAKLDLRPGGVAS
LLQVTDLKNSPGPAKKDLRVAMKQVLDLFQDNYPELVARNVSTPCDFNKFLFLPNLDPNV
CRI

Transcript Sequence

Transcript ID

Os06t0671800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:27875114:27878195:1 gene:Os06g0671800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to patellin-5. (Os06t0671800-01)
Sequence

GTTTGTTGGTTGGTTACGGCTGCGAGCTTGGGCACCGCAAAAGCGAACCGGGCCCCAGCC
CACCGGCCCAACGGCTCGCTCCACCTGCACACGTGTCCCCACCCCATTGGCTCCCTCGCC
ATAGCCGTTGCTCTTGTACTATATAGCCCACCCGTTTGTTCCCTCTCGTTCTCACTCCCC
ACCTCCTCTTCTTCTTCTCTGACACGATCACAAAAAAAATTGCATCTTTTGTTTGTTGTT
GCTTGTGCTTTGGTGTGTTTTGTTGTTGGTAGCCATGGCGGTGGAGGTCGTGTCTGAGGG
TGCGGCGGCCGCCGCGGCGGAGGTGGCGGCGCCGGAGACGAAGGAGGTGACCGCGAAGGC
GGCGGCGGATGAGGCGGTGACGCTGGCTGCCGTCGTGTCCAAGAACGCGTCGTTCAGGGA
GGAGAGCAACTTCCTGGATGATCTCAAGGACGGCGAGAGGAAGGCGTTGGCTGAGCTCCG
TGCCAAGGTTGAGGAGGCCATCGTCGACGGCAAGCTGTTCGATGACGGCAAGGTGGAGGC
CAAGAAGAAGGCCGCGGCGGCGGAGGAGGAGAAGGCGGTGGAGGAGGCCGCCGGTGAGAA
GAAAGATGGCGAGGAGAAGAAAGAGGAGGAGGAGCCGGTGACGGAGGAGAAGAAGGAAGA
GGAGCAAGGCGAGGAGGAGGAGGAGCCCAAGAAAGAGGAAGCCGACGAGGGCGAGAAGGA
GGAGAAGCCGGCGGAGGAGGAGGCGGCGGCGGTTGTGGACAAGGACATCGCTCTGTGGGG
CGTGCCGCTGCTGCCGAGCAAGGGCGACGACGCCACCGACGTCGTCCTCCTCAAGTTCCT
CCGCGCGCGCGACTTCAAGGCCGGCGCCGCCTTCGACATGCTCCGCAAGACGCTCCACTG
GCGCAGGGAGTGGAAGGGCTTCGCCGCCGGCACCGACGACGACGACGACGGCGAGGCGCT
CCCGGCGGAGCTCGCCGACGCGTGCTACCTCGACGGCGCGGACAGGGAGGGCCACCCGGT
GTGCTACAACGCGCTCGGCGTGTTCGCCGACGACGCCGTGTACAAGAAGGCGCTCGGCAC
GGAGGAAGGCAAGGCGAGGTTCCTCCGGTGGAGGGTGCGCGCCATGGAGAGCCACGTGGC
CAAGCTCGACCTCAGGCCCGGCGGCGTCGCGTCGCTGCTGCAGGTGACGGACCTCAAGAA
CTCGCCGGGGCCGGCCAAGAAGGACCTCCGCGTCGCCATGAAGCAGGTGCTCGACCTCTT
CCAGGACAACTACCCTGAGCTCGTCGCAAGAAACGTGAGTACTCCTTGTGATTTTAATAA
ATTTCTCTTCCTGCCCAATTTAGATCCAAATGTGTGTCGGATTTAACTGAATTTTGTGCC
AATTGAACTGCAGATTCTGATCAATGTGCCGTTCTGGTACTACGCGTTCAGCACCCTCTT
CTACCCGTTCATGACGCAGAGGACCAAGAGCAAGTTCGTCATTGCTCGGCCCTCCAAGGT
CACCGAGACCCTCCTCAAGTAAGAACCAAGTTTTTCACAATCTTGTTGCCTCAATTGCAA
TATGTTGATCAATTTTTATTCATAATTATGGAGCGAACTTTGACAAAAATGTGTGATTCT
TCTGAAGGTACATTCCCATTGAAGCCATTCCAGTGAAGTACGGTGGTCTGAAGCGCGACG
ACGACACCGAGTTCTCGGCAGAGGACAGTGAAGTCACAGAGCTCGTTGTCAAGGCAAGCT
CCACCGAAACCATCGAGATCGAAGCCACAGAGGTATAAAACACGATTTAGTTTGAACAAA
ATTTTCTCAAAACCAAAATTTGTATCTGCAAGAGTTGCTTAGCATCAGCCAAATCTTCGT
GTTTCAGGGTGACACTACGCTGACATGGGACCTGACCGTGCTGGGATGGGAGGTGAACTA
CAAGGAGGAGTTCGTGCCGAGCGAGGAGGGCTCGTACACCGTCATCGTCAAGAAGGGGAA
GAAGATGGGGTCGTCGGAGGCGGCGGTCCGCAACTCGTTCCGCGCCGGCGAGCCGGGGAA
GGTGGTCCTCACCGTCGAGAACCTGACGCACAGGAAGAAGAAGGTGCTGTTCAGGCACAA
GGCCAAGAGCGCCTGTGCCAAGGAGTGCTGAGAATCTGGGCTTTCGCTGCTCATTGTGGT
GAATTCTTTTGGAGGCTGCTGAGATGCGTGGATTCGTTCTATTCTTTTGTGTGTGTGTGA
GAGAGAGAGAGATCATTTTGTTTGTATGTGGAGATTGTTTCATTGATTTACCCGAGAATA
TAAAGAATCGGATGATTACAGAACTAATCTTACTTGTTCAAGCATAACGCAACAATTTTA
GTCAACTCAAACAAATGGGCCAGTTCTTTGTCATTATTGAAACATGTTAGTTTGCAAAAA
AAAAAGTACTTTCCAAAAAAAAACATTTTCTAAAATATTTATTTTATAATCAAGTTGATA
ACCCAGGGGGTCGTCGGAGGTGGCATTTTAGTTCAAACACGCAGAGGTGGTCCAATAAGC
CCTGCAAAGCTAAAGTTCAGTTTCATATGCATTCCACCTCAAGCTTTGCTACATACTTCC
AACAGTTAATCCACCTCAAGACAATAATGTTGAACATACCATTAACCCAGATAAAAATAG
TCCGACAAGGCAACATAGTATTTGGAAATAATAACATTAACCTAGCATCTAACAAGCACC
CCCAATCAACGATGGTAACTAGTAGTAGCAAATGTCACAAGGGATATCTATATAGCTCAA
ACATGCAGAGAGGTGGCTTAGGCAGCAACCTCCTCGTCCTCCTCTTCCTCCTCATAGTCC
TCTTCCTCAGCGGTGGCATCCTGGTACTGCTGGTATTCAGCTACCAGGTCGTTCATGTTG
CTCTCAGCCTCGGTGAACTCCATCTCGTCCATTCCCTCACCAGTGTACCAGTGCAAGAAA
GCCTTCCTCCTGAACATGGCGGTGAACTGCTCACTGACACGGCGGAACATCTCCTGGATT
GAGGTCGAGTTGCCGATGAATGTGGATGCCATCTTCAGGCCAATGGGTGGAATGTCACAC
ACACTCGACTTGACATTGTTAG