Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0670500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:27792515:27798510:1 gene:Os06g0670500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 59B description:Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase. (Os06t0670500-01);Hypothetical conserved gene. (Os06t0670500-02)
Sequence

ATGTCGGTCCTCATCGTGACCAGCGTGGGGGACATCGAGGTGGACCTCCACACCGACATG
TGCCCCCTCACCACCAAGAACTTCCTCAAGCTCTGCAAGATGAAGTATTACAATGGGTGC
CTGTTCCACAAGGTGGAGAAGGATTTCTTGGCACAAACTGGGGACCCAACTGGAACAGGA
GCTGGAGGCGATTCTGTATACAAGTTCCTTTATGGTGATCAAGCTCGATTTTTTGATGAT
GAGATCCGACCAGACCTTAGGCATTCAAAAAAGGGAACTATTGCTATGGCGAGTGCTGGT
GAAAATTGCAATGCCTCGCAGTTCTATATCACCTTGCGGGATGACGTAGACTACCTTGAT
GATAAACACACAGTGTTCGGCATGGTTGCTGAAGGCTTTGACACGCTGACAAAGATTAGT
GAAACATATGTTGATGATAAAGGGAGACCATTTAAGGACATCAGGATTAAACATACGTAT
GTCTTGGATGATCCTTTTGACGATCCTCCTCAGCTCAGTGAACTTATTCCTGAGAATTCT
CCTGTAGGGAAACCACAGGATGAGATTGCAGAAGAGCGCTTAGAGGATAGCTGGGTCCCT
ATGGATGAAATGGTGGCTCCTGAAGAACTTGAGGAGATGATCCGCTCCAAAGAAGCACAT
ACAAATGCTGTGATTCTTGAGAGCGTGGGAGATATTCCAGATGCTGAGATCAAACCACCA
GACAACGTTTTATTTGTTTGTAAACTCAACCCAGTAACACAAGATGAAGATTTATATACA
ATTTTTTCTCGTTTTGGAACTGTGACATCAGCTGAAATAATCCGTGATTACAAGACTGGT
GATAGCTTATGCTATGCTTTTATTGAATTTGAGACAAAGGAGGCTTGTGAGCGGGCATTC
TTCAAGATGGACAATTGTTTGATTGATGATCGAAGAATACATGTTGACTTTAGTCAAAGT
GTTTCAAAACTGTGGGGTCAGTTCAGACAAAGCAAAAGAAATGCAAATAAAGATGGATGC
TTCAAGTGTGGCGCCCCTGATCACATAGCCAAAGACTGTGACCAGGGCACTGAGCAGAAA
AACAAAGGCCCAAGTTATGTCCTGAAAGATGAAAACACTCAGCGTGGTGGAAATAACCGT
CGAAGCTATGATCTTGTCTTTGATGAAGATGGTGAAAATTATACTGATCAGCAAGATCCT
GGAAGTACTGGCCGAAGAAAGATTCAAAGAACAGATGATCGCAAATCAGGGCTGCCACCT
CGGGGTGACCATGACAGGATTAGCCGGGAGAGAACTCACAGTGATGAGAATGGTAGAGAA
GGTGGTAAAGAAGGTGATAGGGACCGAGGGATTCGTAAGCACGAGGACTACCACCGTTAC
AATAAATCTGGTGAACGGAGCTCTAGTAGATACGATGATCGTGGCTACAGCAAGCACGAG
AGCAGGGGCAAATATAGGGATGGCAATGATGATTACAGACGACAACCGGGAGGTGGCAGT
CGATATGGCAGGGATAAGTATGAAGGTGAACGGCGCTACAGAGAAGATGATGGCCATGGA
AGGAGTGACCGTCACAAGAGAGATGAAAGTGATAACAGGAAAAGAAGCCCAGATACTGGT
AAGCATAGAAGAGAAGACGGTGGTCACCGTGAGACAAGCAAGCACAGGGAAAGGAGGCAG
AGAGATGATAGATAG

Peptide Sequence

PEP ID

Os06t0670500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:27792515:27798510:1 gene:Os06g0670500 transcript:Os06t0670500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 59B description:Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase. (Os06t0670500-01);Hypothetical conserved gene. (Os06t0670500-02)
Sequence

MSVLIVTSVGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLFHKVEKDFLAQTGDPTGTG
AGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLD
DKHTVFGMVAEGFDTLTKISETYVDDKGRPFKDIRIKHTYVLDDPFDDPPQLSELIPENS
PVGKPQDEIAEERLEDSWVPMDEMVAPEELEEMIRSKEAHTNAVILESVGDIPDAEIKPP
DNVLFVCKLNPVTQDEDLYTIFSRFGTVTSAEIIRDYKTGDSLCYAFIEFETKEACERAF
FKMDNCLIDDRRIHVDFSQSVSKLWGQFRQSKRNANKDGCFKCGAPDHIAKDCDQGTEQK
NKGPSYVLKDENTQRGGNNRRSYDLVFDEDGENYTDQQDPGSTGRRKIQRTDDRKSGLPP
RGDHDRISRERTHSDENGREGGKEGDRDRGIRKHEDYHRYNKSGERSSSRYDDRGYSKHE
SRGKYRDGNDDYRRQPGGGSRYGRDKYEGERRYREDDGHGRSDRHKRDESDNRKRSPDTG
KHRREDGGHRETSKHRERRQRDDR

Transcript Sequence

Transcript ID

Os06t0670500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:27792515:27798510:1 gene:Os06g0670500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 59B description:Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase. (Os06t0670500-01);Hypothetical conserved gene. (Os06t0670500-02)
Sequence

ATAAAAAACAAAAAAGAAAAAAAATAGAAACACCTCGTCGGCGTTTAGAAAGGCGGTTGG
GGTTCGGCGGCGGCGGCGGAGGCCGGTGAGTATCCGCGGCCGCGCGAACCAGTCGCCTGA
GCTCCCAGAAGCATCCGGCGCTGCGGCTCCTCCGTGATTTGTGTATTTTTCCCCTTGAAT
CCCGCGCCGTCGCGGCCGCCGTGTGCTCTTGCCGCCGGCGAGAAGGGGGGAAAACGCCCG
CGGAGATGTCGGTCCTCATCGTGACCAGCGTGGGGGACATCGAGGTGGACCTCCACACCG
ACATGTGCCCCCTCACCACCAAGAACTTCCTCAAGCTCTGCAAGATGAAGTATTACAATG
GGTGCCTGTTCCACAAGGTGGAGAAGGATTTCTTGGCACAAACTGGGGACCCAACTGGAA
CAGGAGCTGGAGGCGATTCTGTATACAAGTTCCTTTATGGTGATCAAGCTCGATTTTTTG
ATGATGAGATCCGACCAGACCTTAGGCATTCAAAAAAGGGAACTATTGCTATGGCGAGTG
CTGGTGAAAATTGCAATGCCTCGCAGTTCTATATCACCTTGCGGGATGACGTAGACTACC
TTGATGATAAACACACAGTGTTCGGCATGGTTGCTGAAGGCTTTGACACGCTGACAAAGA
TTAGTGAAACATATGTTGATGATAAAGGGAGACCATTTAAGGACATCAGGATTAAACATA
CGTATGTCTTGGATGATCCTTTTGACGATCCTCCTCAGCTCAGTGAACTTATTCCTGAGA
ATTCTCCTGTAGGGAAACCACAGGATGAGATTGCAGAAGAGCGCTTAGAGGATAGCTGGG
TCCCTATGGATGAAATGGTGGCTCCTGAAGAACTTGAGGAGATGATCCGCTCCAAAGAAG
CACATACAAATGCTGTGATTCTTGAGAGCGTGGGAGATATTCCAGATGCTGAGATCAAAC
CACCAGACAACGTTTTATTTGTTTGTAAACTCAACCCAGTAACACAAGATGAAGATTTAT
ATACAATTTTTTCTCGTTTTGGAACTGTGACATCAGCTGAAATAATCCGTGATTACAAGA
CTGGTGATAGCTTATGCTATGCTTTTATTGAATTTGAGACAAAGGAGGCTTGTGAGCGGG
CATTCTTCAAGATGGACAATTGTTTGATTGATGATCGAAGAATACATGTTGACTTTAGTC
AAAGTGTTTCAAAACTGTGGGGTCAGTTCAGACAAAGCAAAAGAAATGCAAATAAAGATG
GATGCTTCAAGTGTGGCGCCCCTGATCACATAGCCAAAGACTGTGACCAGGGCACTGAGC
AGAAAAACAAAGGCCCAAGTTATGTCCTGAAAGATGAAAACACTCAGCGTGGTGGAAATA
ACCGTCGAAGCTATGATCTTGTCTTTGATGAAGATGGTGAAAATTATACTGATCAGCAAG
ATCCTGGAAGTACTGGCCGAAGAAAGATTCAAAGAACAGATGATCGCAAATCAGGGCTGC
CACCTCGGGGTGACCATGACAGGATTAGCCGGGAGAGAACTCACAGTGATGAGAATGGTA
GAGAAGGTGGTAAAGAAGGTGATAGGGACCGAGGGATTCGTAAGCACGAGGACTACCACC
GTTACAATAAATCTGGTGAACGGAGCTCTAGTAGATACGATGATCGTGGCTACAGCAAGC
ACGAGAGCAGGGGCAAATATAGGGATGGCAATGATGATTACAGACGACAACCGGGAGGTG
GCAGTCGATATGGCAGGGATAAGTATGAAGGTGAACGGCGCTACAGAGAAGATGATGGCC
ATGGAAGGAGTGACCGTCACAAGAGAGATGAAAGTGATAACAGGAAAAGAAGCCCAGATA
CTGGTAAGCATAGAAGAGAAGACGGTGGTCACCGTGAGACAAGCAAGCACAGGGAAAGGA
GGCAGAGAGATGATAGATAGGTCACTGCATCACCGTCAGTTTTGTCTTGCCTGTTTCTCA
TCATACATTGAATTTTGTCATTCTTAATCCAAAGATAGCACCAGAACACTAAACATGTAG
CTTAGAATCTGCGTGTAGACATTATGAGAGCTCCACTGGCTACAGATTGTTGTAACTTGT
AGACCTTTTCTTTTCTATACATGCTCATGGACGTTGTTCTTTTTGGGGGACG