Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0661800-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:27275526:27278844:-1 gene:Os06g0661800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cryptochrome DASH, chloroplastic/mitochondrial. (Os06t0661800-01);Similar to Cryptochrome dash (Fragment). (Os06t0661800-02)
Sequence	CACTTCCTCTCCTCTTCCTCCCCTCTCAATCCCCAATTCCTCCTCCTCCCGAGGCAATCC GCGAGGCTGCGCGTCCTCCTATCCATCCCGGTCTCCGCCATGAGCTCCTCGTCGTCGTCG TCGTCGCGGGGCGCGCTGGCGGCGGCGGCGGTGCCTTCCCTCTCCGCCGACGAGGCCGGC GCGGCGGCGGACGAGGCGTTCTTGAGGTACACCTCGCCGAGCATGCGGCGGAGCGGCGGC GGCGGGGTTGCCATCGTGTGGTTCAGGAACGACCTCCGGGTGCTCGACAACGAGGCGGTG GTGCGCGCGTGGGCCGCCTCCGATGCCGTCCTCCCCGTCTACTGCGTCGATCCCCGGATC TCCGCGGGGAGCACCCACTACTTCGGTTTCCCCAAGACTGGAGCATTGAGGGCGCAATTC CTGATAGAGTGCTTGGAGGATTTGAAGCGCAACCTGACGAAACAAGGTCTCGACCTGCTC ATCCGCCATGGGAAACCTGAAGACATCCTCCCTTCAATTGCAAAGGCTGTCACTGCACAT ACGGTCTATGCTCATAAGGAAACCTGCAGCGAGGAACTCCTGGTTGAACACCTTGTGCGC AAAGGCTTGGAGCAAGTTGTGATTCCTCAGGGAGGAGCATCTAACCAGAAGAAGCCTCGA AATCCCAAGTTGCAGCTCATCTGGGGAGCGACATTGTACCATGTCGATGATCTTCCATTC TCCGTGAACAATTTGCCTGACGTATATACACAGTTCAGAAAGGCTGTTGAATCTAAGTCC TCAGTTCGGAATTGTAGCAAGTTGCCACCGTCACTCGGGCCGCCTCCTGGTTCTGGCCTG GATGAAATTGGAGGTTGGGGAACAGTACCAACACTGGAGTCACTAGGCCTAAGCATGACA AAGGCAGAGAAGGGAATGCATTTCGTGGGAGGGGAGAGTGCAGCTCTGGGAAGAGTTCAT GAGTACTTCTGGAAGAAAGACCAGCTGAAAGTCTACAAAGAGACCAGGAATGGCATGCTA GGTCCAGACTACTCCACCAAGTTCTCCCCTTGGCTTGCTTCTGGCAGTCTTTCGCCTCGT TATATTTGTGAAGAGGTAAAGAGATATGAGAAGCAGAGAATAGCAAATGATTCTACATAC TGGGTTTTATTTGAGTTGATATGGAGAGATTACTTCCGGTTCATATCAGCAAAATATGGG AACTCCATTTTTCACCTAGGGGGTCCAAGGAACGTAGAGTCCAAGTGGAGCCAGGATCAG GCACTGTTTGAATCTTGGAGAGATGGTCGAACTGGGTACCCTCTTATTGACGCCAACATG AAGGAGCTTTTAGCGACAGGTTTCATGTCCAACCGTGGCCGTCAGATTGTCTGCTCATTT CTGGTCCGAGATATGGGTATTGATTGGCGAATGGGAGCTGAATGGTTTGAAACATGCCTA TTGGATTATGACCCAGCTTCAAATTATGGTAATTGGACATATGGAGCAGGAGTTGGCAAT GATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAAGCCAAGACATATGATCCTGAT GGAGAGTATGTTGCCTACTGGTTGCCAGAGCTCCGATCAATTGCAAAGGAAAGAAGGAAT TTCCCAGGAGCTTCATACATCAAGCAGGTTGTCCCACTGAAATTTGATGGTGGACATCAG AAGAGAGATCAGCAGTTCAACAGGCAGAGAAGGCCAGGCCACATGTATAGAAGACAAAAA TAA

Peptide Sequence

PEP ID	Os06t0661800-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:27275526:27278844:-1 gene:Os06g0661800 transcript:Os06t0661800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cryptochrome DASH, chloroplastic/mitochondrial. (Os06t0661800-01);Similar to Cryptochrome dash (Fragment). (Os06t0661800-02)
Sequence	HFLSSSSPLNPQFLLLPRQSARLRVLLSIPVSAMSSSSSSSSRGALAAAAVPSLSADEAG AAADEAFLRYTSPSMRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRI SAGSTHYFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAH TVYAHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPF SVNNLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMT KAEKGMHFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPR YICEEVKRYEKQRIANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGGPRNVESKWSQDQ ALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCL LDYDPASNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRN FPGASYIKQVVPLKFDGGHQKRDQQFNRQRRPGHMYRRQK

Transcript Sequence

Transcript ID	Os06t0661800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:27275526:27278844:-1 gene:Os06g0661800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cryptochrome DASH, chloroplastic/mitochondrial. (Os06t0661800-01);Similar to Cryptochrome dash (Fragment). (Os06t0661800-02)
Sequence	CACTTCCTCTCCTCTTCCTCCCCTCTCAATCCCCAATTCCTCCTCCTCCCGAGGCAATCC GCGAGGCTGCGCGTCCTCCTATCCATCCCGGTCTCCGCCATGAGCTCCTCGTCGTCGTCG TCGTCGCGGGGCGCGCTGGCGGCGGCGGCGGTGCCTTCCCTCTCCGCCGACGAGGCCGGC GCGGCGGCGGACGAGGCGTTCTTGAGGTACACCTCGCCGAGCATGCGGCGGAGCGGCGGC GGCGGGGTTGCCATCGTGTGGTTCAGGAACGACCTCCGGGTGCTCGACAACGAGGCGGTG GTGCGCGCGTGGGCCGCCTCCGATGCCGTCCTCCCCGTCTACTGCGTCGATCCCCGGATC TCCGCGGGGAGCACCCACTACTTCGGTTTCCCCAAGACTGGAGCATTGAGGGCGCAATTC CTGATAGAGTGCTTGGAGGATTTGAAGCGCAACCTGACGAAACAAGGTCTCGACCTGCTC ATCCGCCATGGGAAACCTGAAGACATCCTCCCTTCAATTGCAAAGGCTGTCACTGCACAT ACGGTCTATGCTCATAAGGAAACCTGCAGCGAGGAACTCCTGGTTGAACACCTTGTGCGC AAAGGCTTGGAGCAAGTTGTGATTCCTCAGGGAGGAGCATCTAACCAGAAGAAGCCTCGA AATCCCAAGTTGCAGCTCATCTGGGGAGCGACATTGTACCATGTCGATGATCTTCCATTC TCCGTGAACAATTTGCCTGACGTATATACACAGTTCAGAAAGGCTGTTGAATCTAAGTCC TCAGTTCGGAATTGTAGCAAGTTGCCACCGTCACTCGGGCCGCCTCCTGGTTCTGGCCTG GATGAAATTGGAGGTTGGGGAACAGTACCAACACTGGAGTCACTAGGCCTAAGCATGACA AAGGCAGAGAAGGGAATGCATTTCGTGGGAGGGGAGAGTGCAGCTCTGGGAAGAGTTCAT GAGTACTTCTGGAAGAAAGACCAGCTGAAAGTCTACAAAGAGACCAGGAATGGCATGCTA GGTCCAGACTACTCCACCAAGTTCTCCCCTTGGCTTGCTTCTGGCAGTCTTTCGCCTCGT TATATTTGTGAAGAGGTAAAGAGATATGAGAAGCAGAGAATAGCAAATGATTCTACATAC TGGGTTTTATTTGAGTTGATATGGAGAGATTACTTCCGGTTCATATCAGCAAAATATGGG AACTCCATTTTTCACCTAGGGGGTCCAAGGAACGTAGAGTCCAAGTGGAGCCAGGATCAG GCACTGTTTGAATCTTGGAGAGATGGTCGAACTGGGTACCCTCTTATTGACGCCAACATG AAGGAGCTTTTAGCGACAGGTTTCATGTCCAACCGTGGCCGTCAGATTGTCTGCTCATTT CTGGTCCGAGATATGGGTATTGATTGGCGAATGGGAGCTGAATGGTTTGAAACATGCCTA TTGGATTATGACCCAGCTTCAAATTATGGTAATTGGACATATGGAGCAGGAGTTGGCAAT GATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAAGCCAAGACATATGATCCTGAT GGAGAGTATGTTGCCTACTGGTTGCCAGAGCTCCGATCAATTGCAAAGGAAAGAAGGAAT TTCCCAGGAGCTTCATACATCAAGCAGGTTGTCCCACTGAAATTTGATGGTGGACATCAG AAGAGAGATCAGCAGTTCAACAGGCAGAGAAGGCCAGGCCACATGTATAGAAGACAAAAA TAATAAGATGCATATATGTATTTATTATAATTTACACCATATATCAATACGAAGTGAAGC AGATTTAC