Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0661000-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:27242823:27247637:-1 gene:Os06g0661000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC-type domain containing protein. (Os06t0661000-01)
Sequence	AAAGAAGAAGGCAAGACAAGTGAACTAAACTTTGAGGCAGCAATTGTTATACGAGCAAGC TGGTTAAAAAGGAGTAGGCGGTATCTAATAAACGCAGGAATGTCGGCATTTAGAGTGTAT TTCAGTGAAGGTGAAATTATGGAAAATGAAAGTGGTGTCAATCTGAGCAACTTTAGGCAA TGCACACTATACCATCCAAATCCTGACACCCTTACCATGCCCGAAGTTTGGTACTGGCTA ACATGCACATTTTCTTTAGATCCGGGTATATATAGTGTTAACGTGAGGGTTATGTGGAGC CGATCGGCCAACAACATAAGATGGGAGTTAAAAAATGTGACACGGAGTAAGGCCTGGCAG GATTGGCTCGCTGGCTGCAGGAGACGGGGATATGAATATGTCATGCTGGTGCAAGCATGT CAAGGAAGAGTCCCCACGGAGAGCGCAGCGGGGCAATCCAGCAACCGTGAGGAGTTGGGG TCTAGTTCACACGAAGAAGATGAAGTTGTAGCTCCCCATCATGGTGGCGATGTTGGTCCT GACATTCAAAATCTATCCATACAAGGAGATGAAGTGGTCAACCGCCATCCTACTGGTGAA GCCGATGAAGGGGAGGACATACCTGCTATAGTTGAAGAAATTGAGAGGGTGGACCGACAT GCAATCGAAGATGAGGAAAACCTCGCTGCTGAAGAGAATGATGACGAGGATGAACAAGAA GTTGAGGAAGTTCCTATGCCTGCTTCGTGGAACCTTGAAGACCCTGGTTATATTGCAGAA AACTCTTGTCATGATTCAATATGGTTCTACGGGGATGGCCAAATCAATCTGGGTGCAATG TTCCGTGACAAAACGGGGTTGCAAGACGCAGTGAAGTCATGGTCATTCAAGACGCAAAGG CAGTTCAGGGTTGTGAAGTCTAACAAGACTGAGTACACGGTCGTCTTCCGTCTTCATGGT CACGTGCCAAAGTACGAGTCTTACTGGATTCTGTCCAAACTGCAGGAACACTCCTGTCTG ATTCGGAACACTAGGGAGTCGCACCGCAACCTGACCGCGGCATACGTTGCGAACAAGTAC TACAAGGAAATTATTGAAGGTGATGACCTGCCTGTGCGGCACATAATAAAACTGGTGGAG AAAGGTGAACAATACACAATTAGTTACCACAAGGCTTGGAGGGCGAAACAAAAGGCCATG GAGAAAAGATATGGGACATTTGAGGAAGCATACGACACTCTGTCACAGATGCTTAACATT CTGAAGATCAGGAACCCTAGGACCTATGTTGCTGTGCAGGATCGGGAGTCAATTCGTCCT CCAAATTATCTTGTGATGCAACGGGCATTCTTTGCATTCGGAGCATGCATTCTTGCGTTC CAGTGCTCGAGGCCGGTGCTGTGTGTCGACGGTACTTTCCTAACTGGGAAGTACCGAGGC CAAATATTAACAGCTGTTGGTGCGGATGCGAACAACCAGATAATTCCAGTAGCTTTTGCT TTTGTTGAAAGCGAGAATTACGAAAGCTGGTTGTGGTTCTTGCAACATCTAAAGTGGGGA GTGGTGCAAAAACGCACATCGATATGCATCATCCATGACCGGAATGCCGGTCTGTTGAAG GCAATCAAAGAGCTCCAGGAGGATGGTGATGGTGCATACTACTGGCCTGACATGCACAGC CGTTGGTGCATGCGGCACATGGGAGCCAATTTTTTCAAACAATTCAACAACCGGCGTCTG ATGAACATGTTCAAGCGGTTGTGCAAGGCAAATCAGTCCACAAAGTTCGATGAGCTTTGG AAACAACTTGACGAGGTGACAAGGACACATATCCGGTCAAAGCAGACCAACATCAACCTG CTGGATGTACATGTCCCCCAGGCCCTGGAACCAATGGATGATCTTATTCCATCAAATGGA AAGAAGCGTAGGTCATCAAAGAATATCAAATGTTTTACCCATTGGATTGAGTGCGAGCCG AATGATAAGTGGGCACTCCTGCATGACACTAATGGGGCTAGGCATGGCATAATGACCACT AATCTTGCAGAGGCGTACAATGTGGTTCTTAGCAAATTAAGGCCTTTACCTCTGACTGCT ATTGTTGAAGGCATTATGCACAGGACAACGATGTGGATGAGGACGAGGCGGGCCGCGGCG TTGCAACAAATGTCTAATGCACAAACACCTTTCTGCAAAAAGATGGCAGAGTACCTCCAA GAGAAGGCTAACAAGGCCAGATTTCACACGGTCATTACCACTGGGAACGTAAGACGAAGG TGGGAAGTCACATGTCGCACTAAGGGGGATTTTGGATCTTCTACTGGGGTCATCACTCAT GAAGTTACTCTAGGGCACGAATCTGATAACACATGTTCGTGCTCTTGCAATAAGCCGAAG CTTCTTCATAAGCCATGTAGCCATGTCCTGGCCGCATGCGCTAAAATTAAGCTTGATTCA ACATCATACGTGTCGACGTTCTACCTAAAGGATAGAGTTCTAAATGCATGGAGTGCTGAG ATCCTCGGGTGGAGGTCCCTCCAACACCTAGTCGAAACTGGGGGTGATAACAGGATCTAT GTGCCAGACTTGGATTTGTTGAAGGCCGGTAAGGGTAGAAGACAAACACGTCGCTTAAGA AATGATATGGATGCATCCGAAGCGGGAGGGCCTGTAAGGCGATGTGAGAACTGTCTTCAG TACGGGCACCGCACTAGAGATTGCAAGAATAACAAGGAGGGTACATCTTCAACCATGGAA CCTATGCAACAACGTGCGAGGAGGAATAGAAGGGGCTCTCAGGGTGCTCACGATAGGGAG GAAGGAAACCTGCAGTAG

Peptide Sequence

PEP ID	Os06t0661000-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:27242823:27247637:-1 gene:Os06g0661000 transcript:Os06t0661000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC-type domain containing protein. (Os06t0661000-01)
Sequence	KEEGKTSELNFEAAIVIRASWLKRSRRYLINAGMSAFRVYFSEGEIMENESGVNLSNFRQ CTLYHPNPDTLTMPEVWYWLTCTFSLDPGIYSVNVRVMWSRSANNIRWELKNVTRSKAWQ DWLAGCRRRGYEYVMLVQACQGRVPTESAAGQSSNREELGSSSHEEDEVVAPHHGGDVGP DIQNLSIQGDEVVNRHPTGEADEGEDIPAIVEEIERVDRHAIEDEENLAAEENDDEDEQE VEEVPMPASWNLEDPGYIAENSCHDSIWFYGDGQINLGAMFRDKTGLQDAVKSWSFKTQR QFRVVKSNKTEYTVVFRLHGHVPKYESYWILSKLQEHSCLIRNTRESHRNLTAAYVANKY YKEIIEGDDLPVRHIIKLVEKGEQYTISYHKAWRAKQKAMEKRYGTFEEAYDTLSQMLNI LKIRNPRTYVAVQDRESIRPPNYLVMQRAFFAFGACILAFQCSRPVLCVDGTFLTGKYRG QILTAVGADANNQIIPVAFAFVESENYESWLWFLQHLKWGVVQKRTSICIIHDRNAGLLK AIKELQEDGDGAYYWPDMHSRWCMRHMGANFFKQFNNRRLMNMFKRLCKANQSTKFDELW KQLDEVTRTHIRSKQTNINLLDVHVPQALEPMDDLIPSNGKKRRSSKNIKCFTHWIECEP NDKWALLHDTNGARHGIMTTNLAEAYNVVLSKLRPLPLTAIVEGIMHRTTMWMRTRRAAA LQQMSNAQTPFCKKMAEYLQEKANKARFHTVITTGNVRRRWEVTCRTKGDFGSSTGVITH EVTLGHESDNTCSCSCNKPKLLHKPCSHVLAACAKIKLDSTSYVSTFYLKDRVLNAWSAE ILGWRSLQHLVETGGDNRIYVPDLDLLKAGKGRRQTRRLRNDMDASEAGGPVRRCENCLQ YGHRTRDCKNNKEGTSSTMEPMQQRARRNRRGSQGAHDREEGNLQ

Transcript Sequence

Transcript ID	Os06t0661000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:27242823:27247637:-1 gene:Os06g0661000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC-type domain containing protein. (Os06t0661000-01)
Sequence	GAGGAAGACAGAAGGGAGTGAACTGAGGAGAGGAAGAGCAAGAGAAGAGAGGAGGCAGTG CATGCAGTGGAGAGAAGGAAAAAAAGACACGTTGTTACGAACGAACAAATAAATGCAGTA GTACGAAGAACTTTGAAATTGGGACTTTTATATGAGCAAATTGGTTGAAAAGAAGAAGGC AAGACAAGTGAACTAAACTTTGAGGCAGCAATTGTTATACGAGCAAGCTGGTTAAAAAGG AGTAGGCGGTATCTAATAAACGCAGGAATGTCGGCATTTAGAGTGTATTTCAGTGAAGGT GAAATTATGGAAAATGAAAGTGGTGTCAATCTGAGCAACTTTAGGCAATGCACACTATAC CATCCAAATCCTGACACCCTTACCATGCCCGAAGTTTGGTACTGGCTAACATGCACATTT TCTTTAGATCCGGGTATATATAGTGTTAACGTGAGGGTTATGTGGAGCCGATCGGCCAAC AACATAAGATGGGAGTTAAAAAATGTGACACGGAGTAAGGCCTGGCAGGATTGGCTCGCT GGCTGCAGGAGACGGGGATATGAATATGTCATGCTGGTGCAAGCATGTCAAGGAAGAGTC CCCACGGAGAGCGCAGCGGGGCAATCCAGCAACCGTGAGGAGTTGGGGTCTAGTTCACAC GAAGAAGATGAAGTTGTAGCTCCCCATCATGGTGGCGATGTTGGTCCTGACATTCAAAAT CTATCCATACAAGGAGATGAAGTGGTCAACCGCCATCCTACTGGTGAAGCCGATGAAGGG GAGGACATACCTGCTATAGTTGAAGAAATTGAGAGGGTGGACCGACATGCAATCGAAGAT GAGGAAAACCTCGCTGCTGAAGAGAATGATGACGAGGATGAACAAGAAGTTGAGGAAGTT CCTATGCCTGCTTCGTGGAACCTTGAAGACCCTGGTTATATTGCAGAAAACTCTTGTCAT GATTCAATATGGTTCTACGGGGATGGCCAAATCAATCTGGGTGCAATGTTCCGTGACAAA ACGGGGTTGCAAGACGCAGTGAAGTCATGGTCATTCAAGACGCAAAGGCAGTTCAGGGTT GTGAAGTCTAACAAGACTGAGTACACGGTCGTCTTCCGTCTTCATGGTCACGTGCCAAAG TACGAGTCTTACTGGATTCTGTCCAAACTGCAGGAACACTCCTGTCTGATTCGGAACACT AGGGAGTCGCACCGCAACCTGACCGCGGCATACGTTGCGAACAAGTACTACAAGGAAATT ATTGAAGGTGATGACCTGCCTGTGCGGCACATAATAAAACTGGTGGAGAAAGGTGAACAA TACACAATTAGTTACCACAAGGCTTGGAGGGCGAAACAAAAGGCCATGGAGAAAAGATAT GGGACATTTGAGGAAGCATACGACACTCTGTCACAGATGCTTAACATTCTGAAGATCAGG AACCCTAGGACCTATGTTGCTGTGCAGGATCGGGAGTCAATTCGTCCTCCAAATTATCTT GTGATGCAACGGGCATTCTTTGCATTCGGAGCATGCATTCTTGCGTTCCAGTGCTCGAGG CCGGTGCTGTGTGTCGACGGTACTTTCCTAACTGGGAAGTACCGAGGCCAAATATTAACA GCTGTTGGTGCGGATGCGAACAACCAGATAATTCCAGTAGCTTTTGCTTTTGTTGAAAGC GAGAATTACGAAAGCTGGTTGTGGTTCTTGCAACATCTAAAGTGGGGAGTGGTGCAAAAA CGCACATCGATATGCATCATCCATGACCGGAATGCCGGTCTGTTGAAGGCAATCAAAGAG CTCCAGGAGGATGGTGATGGTGCATACTACTGGCCTGACATGCACAGCCGTTGGTGCATG CGGCACATGGGAGCCAATTTTTTCAAACAATTCAACAACCGGCGTCTGATGAACATGTTC AAGCGGTTGTGCAAGGCAAATCAGTCCACAAAGTTCGATGAGCTTTGGAAACAACTTGAC GAGGTGACAAGGACACATATCCGGTCAAAGCAGACCAACATCAACCTGCTGGATGTACAT GTCCCCCAGGCCCTGGAACCAATGGATGATCTTATTCCATCAAATGGAAAGAAGCGTAGG TCATCAAAGAATATCAAATGTTTTACCCATTGGATTGAGTGCGAGCCGAATGATAAGTGG GCACTCCTGCATGACACTAATGGGGCTAGGCATGGCATAATGACCACTAATCTTGCAGAG GCGTACAATGTGGTTCTTAGCAAATTAAGGCCTTTACCTCTGACTGCTATTGTTGAAGGC ATTATGCACAGGACAACGATGTGGATGAGGACGAGGCGGGCCGCGGCGTTGCAACAAATG TCTAATGCACAAACACCTTTCTGCAAAAAGATGGCAGAGTACCTCCAAGAGAAGGCTAAC AAGGCCAGATTTCACACGGTCATTACCACTGGGAACGTAAGACGAAGGTGGGAAGTCACA TGTCGCACTAAGGGGGATTTTGGATCTTCTACTGGGGTCATCACTCATGAAGTTACTCTA GGGCACGAATCTGATAACACATGTTCGTGCTCTTGCAATAAGCCGAAGCTTCTTCATAAG CCATGTAGCCATGTCCTGGCCGCATGCGCTAAAATTAAGCTTGATTCAACATCATACGTG TCGACGTTCTACCTAAAGGATAGAGTTCTAAATGCATGGAGTGCTGAGATCCTCGGGTGG AGGTCCCTCCAACACCTAGTCGAAACTGGGGGTGATAACAGGATCTATGTGCCAGACTTG GATTTGTTGAAGGCCGGTAAGGGTAGAAGACAAACACGTCGCTTAAGAAATGATATGGAT GCATCCGAAGCGGGAGGGCCTGTAAGGCGATGTGAGAACTGTCTTCAGTACGGGCACCGC ACTAGAGATTGCAAGAATAACAAGGAGGGTACATCTTCAACCATGGAACCTATGCAACAA CGTGCGAGGAGGAATAGAAGGGGCTCTCAGGGTGCTCACGATAGGGAGGAAGGAAACCTG CAGTAGTTATAACCTACACTGTCCGGTTATTTATGTTCGGTCATGATATGTTCGCTGCAT GACGTTGTATTTCAATAAGTTTGTAATATGTTAGTCAATAAGTATGTGTAATATTTATTT TATTATGGTAATGTTGTAAGATTTTATTGTAAGGTGTTACCAAGTTTGTAACGTTTGTAA TCCTATTGTTGTACTATTTATTTCAATGATATTGCTCGAGTTTGTACTTGTACT