Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0660200-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:27200808:27204611:1 gene:Os06g0660200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN PROTEIN 2 description:Auxin efflux transporter, Polar auxin transport, Control of canopy architecture (Os06t0660200-01)
Sequence	ATGATCACCGGACGCGACATCTACGACGTGCTGGCGGCGATCGTGCCGCTGTACGTGGCG ATGTTCCTGGCGTACGGGTCGGTGCGGTGGTGGGGGATATTCACGCCGGACCAGTGCTCC GGCATCAACCGCTTCGTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCACTTCATCTCC ACCAACGACCCCTACTCCATGAACTACCGCTTCCTCGCCGCCGACTCGCTCCAGAAGCTC GTCATCCTCGCCGCGCTCGCCGTCTGGCACAACCTGCTCTCCCGCTACCGCCGCAATGGC GGCGCCGCCGCGTCGCTCGACTGGACCATCACCCTCTTCTCGCTGTCCACGCTGCCCAAC ACGCTGGTCATGGGCATCCCGCTGCTCCGCGCCATGTACGGCGACTTCTCCGGCTCGCTC ATGGTGCAGATCGTCGTGCTCCAGAGCGTCATCTGGTACACCCTCATGCTCTTCCTCTTC GAGTACCGCGGCGCCAAGGCGCTCATCTCCGAGCAGTTCCCGCCGGACGTCGGCGCCAGC ATCGCCTCGTTCCGCGTCGACTCCGACGTCGTCTCGCTCAACGGGAGGGAGGCGCTGCAG GCGGACGCCGAGGTGGGGCGCGACGGCCGCGTCCACGTCGTCATCCGCCGCTCCGCCTCG GCCTCCACCACGGGCGGCGGCGGCGGCGCGGCGCGCTCCGGCGTGTCCCGGGCGTACGGC GCGTCCAACGCCATGACGCCGCGCGCCTCCAACCTCACCGGCGTGGAGATCTACTCGCTG CAGACGTCGCGCGAGCCCACGCCGCGGGCGTCCAGCTTCAACCAGGCCGACTTCTACGCC ATGTTCTCCGGCAGCAAGATGGCCAGCCAGATGGCTAGCCCCATGGCGCAGCACGGCGGC GCCGGCGGCCGCGCCCAGGGCCTCGACGAGCAGGTCACCAACAAGTTCGCCTCCGGCAAG GCCGCCGACCCGCCGTCGTATCCCGCCCCGAACCCCGGCATGATGCCGGCGCCAAGGAAG AAGGAGCTCGGGGGCTCAAACTCCAACTCCAACAAGGAGCTACACATGTTCGTGTGGAGC TCTAGCGCGTCGCCGGTGTCGGAGGCCAACCTCCGCAACGCCGTCAACCACGCCGCCTCC ACCGACTTCGCCTCCGCGCCGCCGCCGGCAGCCGTTCCCGTCGGCGGCGCCACTCCCAAA GGGGTGAGTGGCAGTGTCACGCCGGCGGCGAAGAACGGCGGCGGCGAGTTGGAGATCGAG GACGGGCTGAAGAGCCCGGCGGCGGGGCTGGCGGCGAAGTTCCCGGTGTCGGGGTCGCCG TACGTGGCGCCGAGGAAGAAGGGCGGCGGCGCCGACGTGCCCGGGCTGGCGGAGGCGGCG CACCCGATGCCGCCGACGAGCGTGATGACGCGGCTCATCCTCATCATGGTGTGGCGCAAG CTCATCAGAAACCCCAACACCTACTCCAGCCTCATCGGCCTCGTCTGGTCCCTCGTCTCC TTCAGGTGGAATATCCAAATGCCTTCAATAATAAAGGGCTCAATATCAATATTGTCAGAT GCAGGGCTAGGAATGGCTATGTTCAGCTTAGGCTTGTTCATGGCTCTGCAACCAAAGATC ATTTCTTGTGGCAAGACCGTTGCGACATTTGCAATGGCAGTGAGGTTCTTGACTGGTCCA GCTGTTATTGCAGCTACTTCCATTGCCATTGGGCTCAGGGGAGTACTCTTGCATGTTGCC ATTGTTCAGGCAGCACTTCCACAAGGCATTGTCCCGTTTGTGTTTGCCAAGGAGTACAAT TGCCATCCTCAAATACTTAGCACAGCGGTTATTTTTGGGATGCTCATCGCGCTTCCGATC ACGATACTCTACTATGTGCTTCTTGGGATATAG

Peptide Sequence

PEP ID	Os06t0660200-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:27200808:27204611:1 gene:Os06g0660200 transcript:Os06t0660200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN PROTEIN 2 description:Auxin efflux transporter, Polar auxin transport, Control of canopy architecture (Os06t0660200-01)
Sequence	MITGRDIYDVLAAIVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS TNDPYSMNYRFLAADSLQKLVILAALAVWHNLLSRYRRNGGAAASLDWTITLFSLSTLPN TLVMGIPLLRAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKALISEQFPPDVGAS IASFRVDSDVVSLNGREALQADAEVGRDGRVHVVIRRSASASTTGGGGGAARSGVSRAYG ASNAMTPRASNLTGVEIYSLQTSREPTPRASSFNQADFYAMFSGSKMASQMASPMAQHGG AGGRAQGLDEQVTNKFASGKAADPPSYPAPNPGMMPAPRKKELGGSNSNSNKELHMFVWS SSASPVSEANLRNAVNHAASTDFASAPPPAAVPVGGATPKGVSGSVTPAAKNGGGELEIE DGLKSPAAGLAAKFPVSGSPYVAPRKKGGGADVPGLAEAAHPMPPTSVMTRLILIMVWRK LIRNPNTYSSLIGLVWSLVSFRWNIQMPSIIKGSISILSDAGLGMAMFSLGLFMALQPKI ISCGKTVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHVAIVQAALPQGIVPFVFAKEYN CHPQILSTAVIFGMLIALPITILYYVLLGI

Transcript Sequence

Transcript ID	Os06t0660200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:27200808:27204611:1 gene:Os06g0660200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN PROTEIN 2 description:Auxin efflux transporter, Polar auxin transport, Control of canopy architecture (Os06t0660200-01)
Sequence	AATTAGCTCGTTCTCTTGTGTCAAGAAAAAAAAAGAAAGAAAAAGCTCGCCGCCGCCGCC ACCGTCGCCGGCGCGATGATCACCGGACGCGACATCTACGACGTGCTGGCGGCGATCGTG CCGCTGTACGTGGCGATGTTCCTGGCGTACGGGTCGGTGCGGTGGTGGGGGATATTCACG CCGGACCAGTGCTCCGGCATCAACCGCTTCGTCGCCGTCTTCGCCGTGCCGCTCCTCTCC TTCCACTTCATCTCCACCAACGACCCCTACTCCATGAACTACCGCTTCCTCGCCGCCGAC TCGCTCCAGAAGCTCGTCATCCTCGCCGCGCTCGCCGTCTGGCACAACCTGCTCTCCCGC TACCGCCGCAATGGCGGCGCCGCCGCGTCGCTCGACTGGACCATCACCCTCTTCTCGCTG TCCACGCTGCCCAACACGCTGGTCATGGGCATCCCGCTGCTCCGCGCCATGTACGGCGAC TTCTCCGGCTCGCTCATGGTGCAGATCGTCGTGCTCCAGAGCGTCATCTGGTACACCCTC ATGCTCTTCCTCTTCGAGTACCGCGGCGCCAAGGCGCTCATCTCCGAGCAGTTCCCGCCG GACGTCGGCGCCAGCATCGCCTCGTTCCGCGTCGACTCCGACGTCGTCTCGCTCAACGGG AGGGAGGCGCTGCAGGCGGACGCCGAGGTGGGGCGCGACGGCCGCGTCCACGTCGTCATC CGCCGCTCCGCCTCGGCCTCCACCACGGGCGGCGGCGGCGGCGCGGCGCGCTCCGGCGTG TCCCGGGCGTACGGCGCGTCCAACGCCATGACGCCGCGCGCCTCCAACCTCACCGGCGTG GAGATCTACTCGCTGCAGACGTCGCGCGAGCCCACGCCGCGGGCGTCCAGCTTCAACCAG GCCGACTTCTACGCCATGTTCTCCGGCAGCAAGATGGCCAGCCAGATGGCTAGCCCCATG GCGCAGCACGGCGGCGCCGGCGGCCGCGCCCAGGGCCTCGACGAGCAGGTCACCAACAAG TTCGCCTCCGGCAAGGCCGCCGACCCGCCGTCGTATCCCGCCCCGAACCCCGGCATGATG CCGGCGCCAAGGAAGAAGGAGCTCGGGGGCTCAAACTCCAACTCCAACAAGGAGCTACAC ATGTTCGTGTGGAGCTCTAGCGCGTCGCCGGTGTCGGAGGCCAACCTCCGCAACGCCGTC AACCACGCCGCCTCCACCGACTTCGCCTCCGCGCCGCCGCCGGCAGCCGTTCCCGTCGGC GGCGCCACTCCCAAAGGGGTGAGTGGCAGTGTCACGCCGGCGGCGAAGAACGGCGGCGGC GAGTTGGAGATCGAGGACGGGCTGAAGAGCCCGGCGGCGGGGCTGGCGGCGAAGTTCCCG GTGTCGGGGTCGCCGTACGTGGCGCCGAGGAAGAAGGGCGGCGGCGCCGACGTGCCCGGG CTGGCGGAGGCGGCGCACCCGATGCCGCCGACGAGCGTGATGACGCGGCTCATCCTCATC ATGGTGTGGCGCAAGCTCATCAGAAACCCCAACACCTACTCCAGCCTCATCGGCCTCGTC TGGTCCCTCGTCTCCTTCAGGTGGAATATCCAAATGCCTTCAATAATAAAGGGCTCAATA TCAATATTGTCAGATGCAGGGCTAGGAATGGCTATGTTCAGCTTAGGCTTGTTCATGGCT CTGCAACCAAAGATCATTTCTTGTGGCAAGACCGTTGCGACATTTGCAATGGCAGTGAGG TTCTTGACTGGTCCAGCTGTTATTGCAGCTACTTCCATTGCCATTGGGCTCAGGGGAGTA CTCTTGCATGTTGCCATTGTTCAGGCAGCACTTCCACAAGGCATTGTCCCGTTTGTGTTT GCCAAGGAGTACAATTGCCATCCTCAAATACTTAGCACAGCGGTTATTTTTGGGATGCTC ATCGCGCTTCCGATCACGATACTCTACTATGTGCTTCTTGGGATATAGTGTTCTTGAAGA AGGCAAAAAAGAAAGAGTAGGGAAAAAAATAGGATTCTAGGTTTCTAGAGGAAAATGCAA AAGAAATATGATATGGGCTTTCTTGAAGACCTGAAGAACTACCAGAGCTGAAGAATAGGG AAATGAGATCAAGTAGGATCCTAGCTAGAGAGAAATGCAAAGGAAAGACACCCCTTGATT ACAATTTTTTAATTTTTTCTGCAACTGTTTTGGCATCAAAGTAAAGGTTAGGGCCTTGAG TATGAAGAGTTCAGCCGTTAATTTGACAAGTTGGGTTGGCGGTACTAAAGATTCC