Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0659300-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:27135555:27144857:-1 gene:Os06g0659300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VILLIN3, VILLIN 3 description:Similar to Actin filament bundling protein P-115-ABP. (Os06t0659300-01)
Sequence	ATGGTTCCCAAAAAGGTTTGGGGGGTTCAACAGCTGAACCCCATGCCCCATGCTAGATCC GCCACTGGGGAGCACACATTTTCTTCTCTCCTGAAGCAAAAATCACCCAAGACCAGCCCT ACAAAACCTAGGGGTTCTATGGCTGTTTCAATGAGGGAAGTGGATGCGGTCTTTCAAGGG GCTGGTCAAAAAGATGGATTGGAAATATGGCGGATTGAAAAACTGCAAGCTGTTCCAGTT CCCAAGGAATCACATGGGAGATTTTTCACAGGAGATTCCTATGTGATATTGAAGACAACC GCTCTTAAAAATGGTTCTTTTCGGCATGATATCCATTATTGGCTTGGTAAAGATACCAGT CAGGATGAAGCTGGTACAGCTGCAATCAAGACTGTGGAATTGGATGCTGCTCTTGGTGGA CGTGCTGTTCAATACCGTGAAGTACAGGGGAATGAGACAGAGAGATTTCTTTCATATTTT AAACCTTGTATTATACCAGAGGAAGGTGGAATTGCATCTGGTTTCAGGCATACTGAAATC AATGAACGGGAGCATGTGACAAGGTTATTTGTCTGCAGAGGAAAGCATACAGTCCATGTC AAAGAGGTTCCGTTTGCAAGATCATCGCTGAACCATGATGATATATTTATTTTAGATACA AAGTCCAAAATATTCCAGTTCAATGGATCGAATTCAAGTATTCAGGAGAGGGCTAAAGCC CTTGAGGTTGTGCAATATTTGAAAGACAGCAACCATGAGGGCAAATGTGACGTAGGTTCA GTTGAGGACGGCAAGCTGATGGCAGATGCTGACGCCGGTGAATTCTGGGGTCTCTTTGGT GGATTTGCACCTCTTCCAAGAAAAACCTTTTCTGATCTTAATGGAAAAGATTCTGCTTTC TCTTCGAAGTTGATCTGTCTAAATAAGGGTCAGACAGTACCAGTTGATTTTGATGTTCTA ACAAGAGAGTTGCTAGATTCAACAAAGTGCTATCTGCTAGACTGTGGATCTGAAATTTAT GTCTGGATGGGTAGAGAGACACCACTCGAAGAGAGGAAACGGGCAGGATCTGCTGCAGAG GAATTACTTCGTGAAGTAAACAGGCCAAAATCTCATATTGTTCGTCTCATGGAAGGATTT GAGACTGTCATATTCCGATCAAAATTCAGTAAATGGCCTAAGAAAGCTGATGCTGTTGTG TCTGATGAGAGCAGAGGAAAAGTTGCAGCTCTTCTTAAGCGGCAAGGATTTAATGTTAAG GGTCTTGCAAAAGCTGCTCCTGTGAAGGAAGAGCCTCAACCTCAAATTGATTGCACAGGC AACCTGCAGGTTTGGCGTGTAAATGGCACTGAAAAGACATTCCTTTCATTCTCTGAGCAA TGCAAATTCTACAGTGGGGACTGTTATATCTTTCAATATAGCTATCCTGGTGAGGAAGGC GAGGAGTGTCTCATTGGTACTTGGTTCGGGAAAAAGAGTGTTCAGGACGAGAAGACTACA GCCATTTCAGTTGCTAGCAAGATGGTTGAGTCTCTGAAATTTCAGGCAGTCATGGTTCGC CTTTATGAAGGAAAGGAACCAGCTGAGTTTTTCTCAATATTTCAGAACCTGGTTATCTTC AAGGGTGGTGTTAGTACTGGGTATAAGAAATTTGTCTCAGAAAACGGTATTGAGGATGAC ACATATTCAGAAAATGGGGTTGCCCTTTTCCGGGTTCAAGGCTCTGGACCAGAAAATATG CAAGCCATTCAAGTTGATACGGCTGCTACCTCGCTGAACTCTTCTTATTGTTATGTACTA CATGATGGAGATACACTATTTACATGGATTGGGAATTTAAGCTCGTCAATGGATCAAGAG CTTGCTGAGAGGCAGCTGGATGTGATCAAGCCAAATCTTCAGTCCAGAATGCTCAAGGAA GGGTCAGAATATGATCAGTTTTGGAAGCTACTTGGAGTCAAGTCAGAGTACCCCAGCCAG AAGATTGCAAAAGATCAAGAAAGTGATCCTCATTTGTTCTCTTGTACTTTTTCAAAGGGA GTGCTTAAGGTTAGAGAAATATTCAACTTTACTCAAGATGATTTGATGACAGAGGACGTT TTTATTTTGGACTGTCATTCATGTGTCTTCGTATGGGTTGGACAACGTGTGGACACAAAA ATGCGAGCACAAGCTTTGAGCGTTGGAGAGAAATTTTTAGAACTTGACATTTTGATGGAG AACTCATCACAAGAAACACCAGTTTATGTCATCACTGAAGGGAGTGAGCCCCAATTTTTC ACCAGGTTCTTCACTTGGGACTCTGCAAAATCAGCCATGCATGGAAACTCATTTGAAAGG AGGTTATCTATAGTGAAGGATGGAGTAAAACCAAAATTAGATAAACCTAAAAGAAGGCCA ACGACATCATCATCACACACTGGACGATCCAGTGTACCTGAAAAATCTCAGCGCTCCAGA AGTATGTCGTTCAGTCCTGACCGTGTAAGAGTCAGAGGAAGATCCCCAGCATTCAATGCA TTAGCTGCTAACTTTGAGAACCCAAATGCTCGGAATCTATCAACACCTCCACCAGCTATC AGAAAACCATCTCCGAAGTCCCCCTCTTCAGATCCTACAAAGCCACCTCAACGAGCTGCT TCAATTGCTGCAATTTCTGCTTCTTTCGAGCGACCTAGGCCAACTCTGATACCAAAGTCA ATCAAAGCGAGTCCTGATGTAAACAAGCCCCAAGTTGAAGCAAGCAAGCCTAAACCAGAG GCAAATGGCAAGGATAGTACCCCTTCAAAGGATAGCCCAACAGTAACTCCAACGATACAG GAAGATCTGAAGGAGGGACAGCCAGAAAACGAGGAAGGGCTCCCAGTGTATCCATACGAA CGCTTGAGGACATCTTCCATCAATCCTGTGACAGACATTGATGTGACTAAGCGTGAGACA TATCTATCTGCGGCGGAGTTCAGGGAAAGGTTTGGGATGACAAAGGAAGCTTTTGCGAAG CTACCAAAGTGGAAGCAGAATAGGTTAAAGATTGCCCTTCAGCTGTTTTAA

Peptide Sequence

PEP ID	Os06t0659300-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:27135555:27144857:-1 gene:Os06g0659300 transcript:Os06t0659300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VILLIN3, VILLIN 3 description:Similar to Actin filament bundling protein P-115-ABP. (Os06t0659300-01)
Sequence	MVPKKVWGVQQLNPMPHARSATGEHTFSSLLKQKSPKTSPTKPRGSMAVSMREVDAVFQG AGQKDGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTS QDEAGTAAIKTVELDAALGGRAVQYREVQGNETERFLSYFKPCIIPEEGGIASGFRHTEI NEREHVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKA LEVVQYLKDSNHEGKCDVGSVEDGKLMADADAGEFWGLFGGFAPLPRKTFSDLNGKDSAF SSKLICLNKGQTVPVDFDVLTRELLDSTKCYLLDCGSEIYVWMGRETPLEERKRAGSAAE ELLREVNRPKSHIVRLMEGFETVIFRSKFSKWPKKADAVVSDESRGKVAALLKRQGFNVK GLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTFLSFSEQCKFYSGDCYIFQYSYPGEEG EECLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVMVRLYEGKEPAEFFSIFQNLVIF KGGVSTGYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSYCYVL HDGDTLFTWIGNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQFWKLLGVKSEYPSQ KIAKDQESDPHLFSCTFSKGVLKVREIFNFTQDDLMTEDVFILDCHSCVFVWVGQRVDTK MRAQALSVGEKFLELDILMENSSQETPVYVITEGSEPQFFTRFFTWDSAKSAMHGNSFER RLSIVKDGVKPKLDKPKRRPTTSSSHTGRSSVPEKSQRSRSMSFSPDRVRVRGRSPAFNA LAANFENPNARNLSTPPPAIRKPSPKSPSSDPTKPPQRAASIAAISASFERPRPTLIPKS IKASPDVNKPQVEASKPKPEANGKDSTPSKDSPTVTPTIQEDLKEGQPENEEGLPVYPYE RLRTSSINPVTDIDVTKRETYLSAAEFRERFGMTKEAFAKLPKWKQNRLKIALQLF

Transcript Sequence

Transcript ID	Os06t0659300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:27135555:27144857:-1 gene:Os06g0659300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VILLIN3, VILLIN 3 description:Similar to Actin filament bundling protein P-115-ABP. (Os06t0659300-01)
Sequence	GTCGTGCGTACCATGAACCCCCCACCTCGTCAGTTGGCCTCCGCCGATCCCCATCTATCC CGCGAGCGAGCAGGGCGGCCGTCGTTCGTCCTGCTGCTTCCGCCGCATCCATCACCCTGG TGAGCACGTCCTCCCGCCACCCGCAGCCTACGCCGATCCCCCCATCCATTCCGCAGCGAG CGAGCAGGGTCGCCGCCGCCGCCGTTTGTCCTGCTGCTCCCGCCGCATCTCGTCCTCTTC CCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACCCACGCA CTTCTTCTCAGAATTCGCCTTCACCCTTAGCTTCTGCTCTAGGAATTTGTCTTTAACGTT AATACTAGTAGCAGTTTGATGGTTCCCAAAAAGGTTTGGGGGGTTCAACAGCTGAACCCC ATGCCCCATGCTAGATCCGCCACTGGGGAGCACACATTTTCTTCTCTCCTGAAGCAAAAA TCACCCAAGACCAGCCCTACAAAACCTAGGGGTTCTATGGCTGTTTCAATGAGGGAAGTG GATGCGGTCTTTCAAGGGGCTGGTCAAAAAGATGGATTGGAAATATGGCGGATTGAAAAA CTGCAAGCTGTTCCAGTTCCCAAGGAATCACATGGGAGATTTTTCACAGGAGATTCCTAT GTGATATTGAAGACAACCGCTCTTAAAAATGGTTCTTTTCGGCATGATATCCATTATTGG CTTGGTAAAGATACCAGTCAGGATGAAGCTGGTACAGCTGCAATCAAGACTGTGGAATTG GATGCTGCTCTTGGTGGACGTGCTGTTCAATACCGTGAAGTACAGGGGAATGAGACAGAG AGATTTCTTTCATATTTTAAACCTTGTATTATACCAGAGGAAGGTGGAATTGCATCTGGT TTCAGGCATACTGAAATCAATGAACGGGAGCATGTGACAAGGTTATTTGTCTGCAGAGGA AAGCATACAGTCCATGTCAAAGAGGTTCCGTTTGCAAGATCATCGCTGAACCATGATGAT ATATTTATTTTAGATACAAAGTCCAAAATATTCCAGTTCAATGGATCGAATTCAAGTATT CAGGAGAGGGCTAAAGCCCTTGAGGTTGTGCAATATTTGAAAGACAGCAACCATGAGGGC AAATGTGACGTAGGTTCAGTTGAGGACGGCAAGCTGATGGCAGATGCTGACGCCGGTGAA TTCTGGGGTCTCTTTGGTGGATTTGCACCTCTTCCAAGAAAAACCTTTTCTGATCTTAAT GGAAAAGATTCTGCTTTCTCTTCGAAGTTGATCTGTCTAAATAAGGGTCAGACAGTACCA GTTGATTTTGATGTTCTAACAAGAGAGTTGCTAGATTCAACAAAGTGCTATCTGCTAGAC TGTGGATCTGAAATTTATGTCTGGATGGGTAGAGAGACACCACTCGAAGAGAGGAAACGG GCAGGATCTGCTGCAGAGGAATTACTTCGTGAAGTAAACAGGCCAAAATCTCATATTGTT CGTCTCATGGAAGGATTTGAGACTGTCATATTCCGATCAAAATTCAGTAAATGGCCTAAG AAAGCTGATGCTGTTGTGTCTGATGAGAGCAGAGGAAAAGTTGCAGCTCTTCTTAAGCGG CAAGGATTTAATGTTAAGGGTCTTGCAAAAGCTGCTCCTGTGAAGGAAGAGCCTCAACCT CAAATTGATTGCACAGGCAACCTGCAGGTTTGGCGTGTAAATGGCACTGAAAAGACATTC CTTTCATTCTCTGAGCAATGCAAATTCTACAGTGGGGACTGTTATATCTTTCAATATAGC TATCCTGGTGAGGAAGGCGAGGAGTGTCTCATTGGTACTTGGTTCGGGAAAAAGAGTGTT CAGGACGAGAAGACTACAGCCATTTCAGTTGCTAGCAAGATGGTTGAGTCTCTGAAATTT CAGGCAGTCATGGTTCGCCTTTATGAAGGAAAGGAACCAGCTGAGTTTTTCTCAATATTT CAGAACCTGGTTATCTTCAAGGGTGGTGTTAGTACTGGGTATAAGAAATTTGTCTCAGAA AACGGTATTGAGGATGACACATATTCAGAAAATGGGGTTGCCCTTTTCCGGGTTCAAGGC TCTGGACCAGAAAATATGCAAGCCATTCAAGTTGATACGGCTGCTACCTCGCTGAACTCT TCTTATTGTTATGTACTACATGATGGAGATACACTATTTACATGGATTGGGAATTTAAGC TCGTCAATGGATCAAGAGCTTGCTGAGAGGCAGCTGGATGTGATCAAGCCAAATCTTCAG TCCAGAATGCTCAAGGAAGGGTCAGAATATGATCAGTTTTGGAAGCTACTTGGAGTCAAG TCAGAGTACCCCAGCCAGAAGATTGCAAAAGATCAAGAAAGTGATCCTCATTTGTTCTCT TGTACTTTTTCAAAGGGAGTGCTTAAGGTTAGAGAAATATTCAACTTTACTCAAGATGAT TTGATGACAGAGGACGTTTTTATTTTGGACTGTCATTCATGTGTCTTCGTATGGGTTGGA CAACGTGTGGACACAAAAATGCGAGCACAAGCTTTGAGCGTTGGAGAGAAATTTTTAGAA CTTGACATTTTGATGGAGAACTCATCACAAGAAACACCAGTTTATGTCATCACTGAAGGG AGTGAGCCCCAATTTTTCACCAGGTTCTTCACTTGGGACTCTGCAAAATCAGCCATGCAT GGAAACTCATTTGAAAGGAGGTTATCTATAGTGAAGGATGGAGTAAAACCAAAATTAGAT AAACCTAAAAGAAGGCCAACGACATCATCATCACACACTGGACGATCCAGTGTACCTGAA AAATCTCAGCGCTCCAGAAGTATGTCGTTCAGTCCTGACCGTGTAAGAGTCAGAGGAAGA TCCCCAGCATTCAATGCATTAGCTGCTAACTTTGAGAACCCAAATGCTCGGAATCTATCA ACACCTCCACCAGCTATCAGAAAACCATCTCCGAAGTCCCCCTCTTCAGATCCTACAAAG CCACCTCAACGAGCTGCTTCAATTGCTGCAATTTCTGCTTCTTTCGAGCGACCTAGGCCA ACTCTGATACCAAAGTCAATCAAAGCGAGTCCTGATGTAAACAAGCCCCAAGTTGAAGCA AGCAAGCCTAAACCAGAGGCAAATGGCAAGGATAGTACCCCTTCAAAGGATAGCCCAACA GTAACTCCAACGATACAGGAAGATCTGAAGGAGGGACAGCCAGAAAACGAGGAAGGGCTC CCAGTGTATCCATACGAACGCTTGAGGACATCTTCCATCAATCCTGTGACAGACATTGAT GTGACTAAGCGTGAGACATATCTATCTGCGGCGGAGTTCAGGGAAAGGTTTGGGATGACA AAGGAAGCTTTTGCGAAGCTACCAAAGTGGAAGCAGAATAGGTTAAAGATTGCCCTTCAG CTGTTTTAAAATCTCTTACTGTGAAACGAGACAGTGTTTCCAACAGTTAGCGCAAGAACA GTATGACGAGACTGATTCCGAAGGTAGAAATTATGTTTACCAGTCACTTTTGTGGTCTCT TGCGGGGTTGCAGTGGTATGCAACATTGGTTGTAAGTGTATCCTGGCTTTGGGTCAAGGG ACCCCCTTGTCAGGTATGGGCGGACGCAGGATCAGTGAATTTTTAGCTGCTCCTGCTTCC AAATATGTGTTGTTGTTCATTGACAATTTTTCATGTTGTGTTGGATTGCTGCATTAGCGG TCCAGTTACTCCATTTTTTTTTCACCATTCCTAGGTCAAGGGTTTGGTTGTGAGCTTGAT TCTTCCCCCCACCTTAAAGCCTCATATTTGTTTGATTTTTTGAACTAGAGGGTTCCCTGA GACAATAAGGGAGACATATATGGTGTAACTTCGGCAACAGAAAATGGTGTACAAAAGAGT TTGTTGAAGAATTTTCCTGAGCTGTTGTCTTGTGCT