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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0659100-00
CDS Infomation

cds chromosome:IRGSP-1.0:6:27114925:27117096:1 gene:Os06g0659100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RICE SQUAMOSA PROMOTER-BINDING-LIKE 10 description:Similar to Squamosa-promoter binding protein 1. (Os06t0659100-00)
Sequence

ATGATGAGCGGTAGGATGAACGCGGCGGGGGACGAGTCGCCGTTCCCGTTCGGGGCGATG
CAGGCGCCGGGGCCGGGGGCGTACGTCGGGTTCGACCATGGCGCGGCGGCGGTGGCGGCG
GCGGCTGCGGCGGCGCAGCGGGCGGGGATGCTGCAGCACCACCACCACCACATGTACGAC
GGCTTGGACTTCGCGGCGGCGATGCAGTTCGGCGGCGGGCAGGACGCGCCGCCGCACCCG
CAGCTGCTGGCGCTGCCGCCGAGCATGGCGGCGCCGCCGCCGCCGCCCATGCCGATGCCG
CTGCAGATGCCCATGACGATGCCGATGCCCGGAGACGTGTACCCGGCGCTCGGCATCGTG
AAGCGCGAGGGCGGGGGCGGAGGTCAGGACGCCGCCGCCGGGAGGATCGGGCTCAACCTC
GGCCGCCGGACCTACTTCTCCCCCGGCGACATGCTCGCCGTCGACCGCCTCCTCATGCGC
TCCCGCCTCGGCGGCGTGTTCGGCCTCGGCTTCGGCGGCGCCCACCACCAGCCACCTCGC
TGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCGGCGCCAAGCACTACCACCGCCGCCAC
AAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTCGCCGCCTCCGGCAAGCAGCAGCGC
TTCTGCCAGCAATGCAGCAGGTTTCACGTGCTCACGGAGTTTGATGAGGCCAAGAGGAGC
TGCCGGAAGCGGCTGGCGGAGCACAACCGTCGCCGGCGGAAGCCGGCGGCGGCGGCGACG
ACCGCCGTGGCGGCGGCCAAGGACGCGGCGGCGGCGCCGGTAGCCGCCGGGAAGAAGCCT
AGCGGCGGCGCCGCCACGTCTTACACCGGTGACAACAAGAACGTGGTGTCCATGAGCGCG
GCCAAGTCGCCCATCTCGTCGAACACCAGCGTGATCAGCTGCCTGCCCGAGCAGGGCAAG
CATGCGGCGGCGGCGGCGAGGCCGACGGCGCTCACGCTCGGCGGCGCGCCGCCGCACGAG
AGCTCCGCGCCGCAGATCGGCGCCATGCTCCATCACCACCACCATCACCAGCAAGACCAC
ATGCAGGTGAGCTCCCTGGTCCACATCAATGGCGGCGGCGGCGGCGGTAGCAACAACATC
TTGTCGTGCTCGTCGGTGTGCTCCAGCGCGCTGCCGTCGACGGCGACCAACGGCGAGGTA
TCAGACCAGAACAACGACAACAGCCACAACAATGGCGGCAACAACAACAACATGCATCTG
TTCGAGGTCGACTTCATGTAG

Peptide Sequence

PEP ID

Os06t0659100-00
PEP Infomation

pep chromosome:IRGSP-1.0:6:27114925:27117096:1 gene:Os06g0659100 transcript:Os06t0659100-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RICE SQUAMOSA PROMOTER-BINDING-LIKE 10 description:Similar to Squamosa-promoter binding protein 1. (Os06t0659100-00)
Sequence

MMSGRMNAAGDESPFPFGAMQAPGPGAYVGFDHGAAAVAAAAAAAQRAGMLQHHHHHMYD
GLDFAAAMQFGGGQDAPPHPQLLALPPSMAAPPPPPMPMPLQMPMTMPMPGDVYPALGIV
KREGGGGGQDAAAGRIGLNLGRRTYFSPGDMLAVDRLLMRSRLGGVFGLGFGGAHHQPPR
CQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRS
CRKRLAEHNRRRRKPAAAATTAVAAAKDAAAAPVAAGKKPSGGAATSYTGDNKNVVSMSA
AKSPISSNTSVISCLPEQGKHAAAAARPTALTLGGAPPHESSAPQIGAMLHHHHHHQQDH
MQVSSLVHINGGGGGGSNNILSCSSVCSSALPSTATNGEVSDQNNDNSHNNGGNNNNMHL
FEVDFM

Transcript Sequence

Transcript ID

Os06t0659100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:27114925:27117096:1 gene:Os06g0659100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RICE SQUAMOSA PROMOTER-BINDING-LIKE 10 description:Similar to Squamosa-promoter binding protein 1. (Os06t0659100-00)
Sequence

CTGCCTTTTTAACCACCCCTGCATTGCAACCCCTCCTCCTCCTCTCCTGCAAGCTCACAC
ACTAGCTTAGCTTAGCCACCTCACTCACTAGCTCACTCTAGCTCGAGCTCCACTTCGTTG
GAAGCCACCACGCCACGACGGCGACGGCGGCGGCGAGGAGGAGGCGGGCATGATGAGCGG
TAGGATGAACGCGGCGGGGGACGAGTCGCCGTTCCCGTTCGGGGCGATGCAGGCGCCGGG
GCCGGGGGCGTACGTCGGGTTCGACCATGGCGCGGCGGCGGTGGCGGCGGCGGCTGCGGC
GGCGCAGCGGGCGGGGATGCTGCAGCACCACCACCACCACATGTACGACGGCTTGGACTT
CGCGGCGGCGATGCAGTTCGGCGGCGGGCAGGACGCGCCGCCGCACCCGCAGCTGCTGGC
GCTGCCGCCGAGCATGGCGGCGCCGCCGCCGCCGCCCATGCCGATGCCGCTGCAGATGCC
CATGACGATGCCGATGCCCGGAGACGTGTACCCGGCGCTCGGCATCGTGAAGCGCGAGGG
CGGGGGCGGAGGTCAGGACGCCGCCGCCGGGAGGATCGGGCTCAACCTCGGCCGCCGGAC
CTACTTCTCCCCCGGCGACATGCTCGCCGTCGACCGCCTCCTCATGCGCTCCCGCCTCGG
CGGCGTGTTCGGCCTCGGCTTCGGCGGCGCCCACCACCAGCCACCTCGCTGCCAGGCCGA
GGGCTGCAAGGCCGACCTCTCCGGCGCCAAGCACTACCACCGCCGCCACAAGGTCTGCGA
GTACCACGCCAAGGCCTCCGTCGTCGCCGCCTCCGGCAAGCAGCAGCGCTTCTGCCAGCA
ATGCAGCAGGTTTCACGTGCTCACGGAGTTTGATGAGGCCAAGAGGAGCTGCCGGAAGCG
GCTGGCGGAGCACAACCGTCGCCGGCGGAAGCCGGCGGCGGCGGCGACGACCGCCGTGGC
GGCGGCCAAGGACGCGGCGGCGGCGCCGGTAGCCGCCGGGAAGAAGCCTAGCGGCGGCGC
CGCCACGTCTTACACCGGTGACAACAAGAACGTGGTGTCCATGAGCGCGGCCAAGTCGCC
CATCTCGTCGAACACCAGCGTGATCAGCTGCCTGCCCGAGCAGGGCAAGCATGCGGCGGC
GGCGGCGAGGCCGACGGCGCTCACGCTCGGCGGCGCGCCGCCGCACGAGAGCTCCGCGCC
GCAGATCGGCGCCATGCTCCATCACCACCACCATCACCAGCAAGACCACATGCAGGTGAG
CTCCCTGGTCCACATCAATGGCGGCGGCGGCGGCGGTAGCAACAACATCTTGTCGTGCTC
GTCGGTGTGCTCCAGCGCGCTGCCGTCGACGGCGACCAACGGCGAGGTATCAGACCAGAA
CAACGACAACAGCCACAACAATGGCGGCAACAACAACAACATGCATCTGTTCGAGGTCGA
CTTCATGTAGAGCTTTACCTTAGCTTAGCTACTTCAATTCCTACTCGATCCTACCATGTG
TTCGTGTCATTTCACCTCTTGTGTAGCTAAAAGTAAAAAAAGAAGGGAGAGCAGAAAAGG
GTAT