Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0658900-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:27087548:27092892:1 gene:Os06g0658900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:small grain and dwarf1 description:Homogentisate phytyltransferase (HPT), Tocopherol (vitamin E) biosynthesis, Plant development, Cold tolerance (Os06t0658900-01)
Sequence	ATGGATTCGCTGCGCCTCCGGCCGTCGCTCCTCGCCGCGCGGGCCCCCGGCGCGGCCTCG CTGCCGCCTCTCCGGCGAGATCACTTTCTACCACCTTTATGTTCTATCCATAGAAATGGT AAACGGCCAGTTTCTTTGTCCAGCCAAAGGACCCAAGGTCCTTCCTTCGATCAATGTCAG AAATTCTTTGGTTGGAAATCCTCCCACCACAGGATACCACATCGACCAACATCTAGTTCC GCTGACGCTTCGGGACAACCTCTACAATCTTCAGCTGAAGCACATGATTCATCAAGTATA TGGAAGCCAATATCATCTTCTCTGGATGCATTTTACAGGTTTTCTCGGCCACATACTGTC ATAGGAACAGCACTTAGCATAGTCTCAGTTTCGCTGCTAGCTGTTGAGAATTTGTCCGAT GTGTCTCCCTTGTTCCTCACTGGTTTGCTGGAGGCAGTGGTAGCAGCTCTTTTCATGAAC ATCTATATCGTTGGATTGAATCAGTTGTTCGACATTGAGATAGATAAGGTTAACAAGCCA ACTCTTCCATTAGCATCTGGGGAATATTCTCCTGCAACTGGAGTTGCACTTGTATCAGCC TTCGCTGCTATGAGCTTTGGCCTTGGATGGGCTGTTGGATCACAGCCTCTGTTCCTGGCT CTTTTCATTAGCTTTATTCTTGGAACAGCATATTCGATTAATCTGCCATTCCTGAGATGG AAGAGATCTGCTGTTGTTGCAGCACTTTGCATATTAGCAGTCCGTGCAGTGATTGTTCAG CTGGCATTTTTTCTCCACATTCAGACATTCGTATTCAGAAGACCAGCAGTCTTTACCAGG CCATTGATTTTTGCAACTGCATTCATGACCTTTTTCTCCGTTGTAATAGCATTGTTCAAG GATATACCTGATATTGAAGGAGACCGTATTTTTGGTATCAAATCTTTCAGTGTTCGATTA GGTCAAAAGAAGGTTTTCTGGATTTGTGTTGGTCTGCTCGAGATGGCTTATTGTGTTGCA ATATTGATGGGAGCTACTTCTGCCTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACAT GCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGCAAAACT GCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATT CCTCTTGTAAGGTGA

Peptide Sequence

PEP ID	Os06t0658900-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:27087548:27092892:1 gene:Os06g0658900 transcript:Os06t0658900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:small grain and dwarf1 description:Homogentisate phytyltransferase (HPT), Tocopherol (vitamin E) biosynthesis, Plant development, Cold tolerance (Os06t0658900-01)
Sequence	MDSLRLRPSLLAARAPGAASLPPLRRDHFLPPLCSIHRNGKRPVSLSSQRTQGPSFDQCQ KFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTV IGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKP TLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRW KRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFK DIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGH AILAAILWNRSRSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR

Transcript Sequence

Transcript ID	Os06t0658900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:27087548:27092892:1 gene:Os06g0658900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:small grain and dwarf1 description:Homogentisate phytyltransferase (HPT), Tocopherol (vitamin E) biosynthesis, Plant development, Cold tolerance (Os06t0658900-01)
Sequence	GCCACCTCCTCTTCTCCTGCAGCGTCCACGCCTCCCTCCCTCACGCCTCGCCTCGCCTCG CCCGCCCACTCACTCCACTCCCCCCCGCAGCCGCCGCGCGCGCCCGGCCGCCGCGGTGGT GGCGGCGGCGGCGATGGATTCGCTGCGCCTCCGGCCGTCGCTCCTCGCCGCGCGGGCCCC CGGCGCGGCCTCGCTGCCGCCTCTCCGGCGAGATCACTTTCTACCACCTTTATGTTCTAT CCATAGAAATGGTAAACGGCCAGTTTCTTTGTCCAGCCAAAGGACCCAAGGTCCTTCCTT CGATCAATGTCAGAAATTCTTTGGTTGGAAATCCTCCCACCACAGGATACCACATCGACC AACATCTAGTTCCGCTGACGCTTCGGGACAACCTCTACAATCTTCAGCTGAAGCACATGA TTCATCAAGTATATGGAAGCCAATATCATCTTCTCTGGATGCATTTTACAGGTTTTCTCG GCCACATACTGTCATAGGAACAGCACTTAGCATAGTCTCAGTTTCGCTGCTAGCTGTTGA GAATTTGTCCGATGTGTCTCCCTTGTTCCTCACTGGTTTGCTGGAGGCAGTGGTAGCAGC TCTTTTCATGAACATCTATATCGTTGGATTGAATCAGTTGTTCGACATTGAGATAGATAA GGTTAACAAGCCAACTCTTCCATTAGCATCTGGGGAATATTCTCCTGCAACTGGAGTTGC ACTTGTATCAGCCTTCGCTGCTATGAGCTTTGGCCTTGGATGGGCTGTTGGATCACAGCC TCTGTTCCTGGCTCTTTTCATTAGCTTTATTCTTGGAACAGCATATTCGATTAATCTGCC ATTCCTGAGATGGAAGAGATCTGCTGTTGTTGCAGCACTTTGCATATTAGCAGTCCGTGC AGTGATTGTTCAGCTGGCATTTTTTCTCCACATTCAGACATTCGTATTCAGAAGACCAGC AGTCTTTACCAGGCCATTGATTTTTGCAACTGCATTCATGACCTTTTTCTCCGTTGTAAT AGCATTGTTCAAGGATATACCTGATATTGAAGGAGACCGTATTTTTGGTATCAAATCTTT CAGTGTTCGATTAGGTCAAAAGAAGGTTTTCTGGATTTGTGTTGGTCTGCTCGAGATGGC TTATTGTGTTGCAATATTGATGGGAGCTACTTCTGCCTGTTTGTGGAGCAAATACGCAAC TGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCT GACAAGCAAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGA ATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGAT TGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAAT CACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGC ACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCC AAAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAG TGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAA